Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011133

Physical Location & Seq

Genomic Coordinates Reverse (-)

28400551 .. 28401229

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCGGCGGCTTAGCTCACACCCACCAAACCGGTCTCCAATTCCTCCACGCGGCCTCCTCTCTCTCTCTCTGCATTTCTTCAACCTACACAAAACCCACAATCCCAAATCTCTCAACTCTCTCTCTCTCTCTCTCTCTCTCTACATTCTTCACTACCATGCCTCGTCTGACCGCTTTGGCACTGATTTTCTTAGTGACAATGGCCTCATCTGTGTCAACTCTAGAAAGCAGAAAGCTTTTGGATGTAAAGGACGATGCCGAGAATCAAAAGAAAGTGGCTTCTCTGTTTCTAAGTGCCCTTCCGAAGGGCAAGGTGCCAGCTTCTACCCCAAGCAAGAAGGGTCACGCCGTCGTCGTCAACGAAAAGCTCATTGCCCGCCATCTTAGCGTCGTTCAAAATCGGATCCTGGCGCAGTCTGTTCCCAGCCCCGGCGTCGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.65

Weight (kDa)

10.08

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29290
fragaria_vesca	FvH4_3g07300
malus_domestica	MD00G1009200.v1.1 MD00G1221100.v1.1 MD10G1275500.v1.1
prunus_persica	Prupe.4G067000_v2.0.a1
pyrus_communis	pycom05g27420 pycom10g23010
rosa_chinensis	RchiOBHm_Chr5g0011661
rosa_laevigata	RLG00000031852
rosa_multiflora	Rmu_sc0000437.1_g000005 Rmu_sc0006382.1_g000003 Rmu_sc0017389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064850
rosa_rugosa	Rorug04G0458300
rosa_samantha	Rh5AG090100 Rh5BG085800 Rh5CG099500 Rh5DG085500
rosa_wichuraiana	Rw5G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	1 cut(s)	53
AciI	CCGC	4 cut(s)	9, 53, 174, 379
AclWI	GGATC	2 cut(s)	400, 413
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	435
AfiI	CCNNNNNNNGG	4 cut(s)	52, 307, 431, 437
AgeI	ACCGGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	84, 398
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	4 cut(s)	17, 238, 323, 370
AluI	AGCT	4 cut(s)	17, 238, 323, 370
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	400, 413
AoxI	GGCC	3 cut(s)	3, 54, 204
AsiGI	ACCGGT	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	316
BccI	CCATC	1 cut(s)	390
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	2 cut(s)	10, 54
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	2 cut(s)	11, 55
Bme1390I	CCNGG	2 cut(s)	410, 432
BmiI	GGNNCC	2 cut(s)	318, 407
BmrFI	CCNGG	2 cut(s)	410, 432
BmsI	GCATC	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 307, 431, 437
Bse118I	RCCGGY	2 cut(s)	5, 32
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	4 cut(s)	52, 307, 431, 437
BseMI	GCAATG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	3 cut(s)	5, 56, 206
BshNI	GGYRCC	1 cut(s)	316
BshTI	ACCGGT	1 cut(s)	32
BsiSI	CCGG	3 cut(s)	6, 33, 432
BslI	CCNNNNNNNGG	4 cut(s)	52, 307, 431, 437
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	3 cut(s)	5, 56, 206
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	405
Bsp1720I	GCTNAGC	1 cut(s)	13
BspACI	CCGC	4 cut(s)	9, 53, 174, 379
BspANI	GGCC	3 cut(s)	5, 56, 206
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	318, 407
BspPI	GGATC	2 cut(s)	400, 413
BspT107I	GGYRCC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	2 cut(s)	5, 32
BssAI	RCCGGY	2 cut(s)	5, 32
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	1 cut(s)	405
BssNI	GRCGYC	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	410
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	7, 321, 379
BstDEI	CTNAG	4 cut(s)	13, 193, 293, 386
BstENI	CCTNNNNNAGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	408, 430
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	5, 56, 206
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	7, 321, 379
CfoI	GCGC	1 cut(s)	415
Cfr10I	RCCGGY	2 cut(s)	5, 32
CseI	GACGC	2 cut(s)	379, 424
CspAI	ACCGGT	1 cut(s)	32
CviAII	CATG	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	13, 193, 293, 386
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	408
FaeI	CATG	1 cut(s)	163
FaiI	YATR	1 cut(s)	161
FatI	CATG	1 cut(s)	159
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	2 cut(s)	10, 54
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	2 cut(s)	10, 54
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	2 cut(s)	10, 54
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	5, 56, 206
HapII	CCGG	3 cut(s)	6, 33, 432
HgaI	GACGC	2 cut(s)	379, 424
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	2 cut(s)	219, 361
HindII	GTYRAC	2 cut(s)	219, 361
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	265
HpaII	CCGG	3 cut(s)	6, 33, 432
Hpy166II	GTNNAC	2 cut(s)	219, 361
Hpy188I	TCNGA	3 cut(s)	171, 306, 405
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	219, 361
Hpy99I	CGWCG	4 cut(s)	356, 359, 395, 440
HpyAV	CCTTC	3 cut(s)	301, 311, 334
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	4 cut(s)	13, 193, 293, 386
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	405
LpnPI	CCDG	6 cut(s)	19, 46, 333, 395, 422, 439
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	196, 344
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	2 cut(s)	72, 142
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	41
MnlI	CCTC	5 cut(s)	56, 67, 70, 174, 217
MroNI	GCCGGC	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	3 cut(s)	6, 33, 432
MspR9I	CCNGG	2 cut(s)	410, 432
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	387
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	1 cut(s)	405
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	318, 407
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	196, 344
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 360
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	11, 55
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	318, 407
PsuI	RGATCY	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	2 cut(s)	10, 54
Sau3AI	GATC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	410, 432
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	6 cut(s)	19, 89, 240, 318, 325, 372
SfaNI	GCATC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	9, 53, 174, 379
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	408, 430
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	41
TauI	GCSGC	2 cut(s)	12, 56
TfiI	GAWTC	1 cut(s)	265
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	196, 344
Tsp45I	GTSAC	2 cut(s)	196, 344
TspRI	CASTG	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	305
XbaI	TCTAGA	1 cut(s)	223
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.