Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011133

Physical Location & Seq

Genomic Coordinates Forward (+)

3238730 .. 3239480

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCCTCGTCTAAGCGCTTTGGCACTCATTTTCTTAGTGGTCTTGGCCTCATTTGCGGCAGCTTCAGAAAGCAGAAAGCTTTTGGACATGAAGAAGCAGGATTGTGATGGCCAGTACAGGAAGAGAGTGGCTTCTCTGTTTCTGGGTGCCCTTCCAAAGGGCACAGTGCCAGCTTCTACGCCCAGCAAGAAGGGTCACGCCGTCGTCATCAACGAGAAGCTCATTGCTCGCCATCTCAGTAGCAACGATCGGATTCTGGCGCAGGCTGTTCCCAGCCCCGGTGTTGGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

10.33

Weight (kDa)

10.29

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29290
fragaria_vesca	FvH4_3g07300
malus_domestica	MD00G1009200.v1.1 MD00G1221100.v1.1 MD10G1275500.v1.1
prunus_persica	Prupe.4G067000_v2.0.a1
pyrus_communis	pycom05g27420 pycom10g23010
rosa_chinensis	RchiOBHm_Chr5g0011661
rosa_laevigata	RLG00000031852
rosa_multiflora	Rmu_sc0000437.1_g000005 Rmu_sc0006382.1_g000003 Rmu_sc0017389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064850
rosa_rugosa	Rorug04G0458300
rosa_samantha	Rh5AG090100 Rh5BG085800 Rh5CG099500 Rh5DG085500
rosa_wichuraiana	Rw5G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	2 cut(s)	109, 286
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	157, 278, 284
AluBI	AGCT	4 cut(s)	62, 79, 173, 220
AluI	AGCT	4 cut(s)	62, 79, 173, 220
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	3 cut(s)	45, 109, 286
ApeKI	GCWGC	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	17, 262
AsuC2I	CCSGG	1 cut(s)	279
BaeGI	GKGCMC	2 cut(s)	151, 164
BalI	TGGCCA	2 cut(s)	111, 288
BanI	GGYRCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	101, 240
BceAI	ACGGC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	2 cut(s)	57, 60
BlsI	GCNGC	2 cut(s)	58, 61
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 278, 284
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	277
BseLI	CCNNNNNNNGG	3 cut(s)	157, 278, 284
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	2 cut(s)	151, 164
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	2 cut(s)	182, 272
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	47, 111, 288
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	157, 278, 284
BsnI	GGCC	3 cut(s)	47, 111, 288
Bsp1286I	GDGCHC	2 cut(s)	151, 164
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	3 cut(s)	47, 111, 288
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	171, 229, 264
BstDEI	CTNAG	3 cut(s)	11, 34, 236
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 262
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	277
BstSLI	GKGCMC	2 cut(s)	151, 164
BstV1I	GCAGC	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	47, 111, 288
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	171, 229, 264
CfoI	GCGC	2 cut(s)	17, 262
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	11, 34, 236
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	109, 286
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	57, 60
Fsp4HI	GCNGC	2 cut(s)	57, 60
GlaI	GCGC	2 cut(s)	16, 261
GluI	GCNGC	2 cut(s)	57, 60
GsaI	CCCAGC	2 cut(s)	186, 276
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	3 cut(s)	47, 111, 288
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	17, 262
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	2 cut(s)	15, 260
HinP1I	GCGC	2 cut(s)	15, 260
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	279
Hpy188I	TCNGA	2 cut(s)	67, 252
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	161, 184
HpyCH4III	ACNGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	11, 34, 236
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	2 cut(s)	15, 260
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	9 cut(s)	83, 103, 125, 128, 183, 196, 242, 248, 286
Lsp1109I	GCAGC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	103, 133
MhlI	GDGCHC	2 cut(s)	151, 164
MlsI	TGGCCA	2 cut(s)	111, 288
MluNI	TGGCCA	2 cut(s)	111, 288
MnlI	CCTC	2 cut(s)	15, 58
Mox20I	TGGCCA	2 cut(s)	111, 288
MscI	TGGCCA	2 cut(s)	111, 288
Msp20I	TGGCCA	2 cut(s)	111, 288
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	58, 61
Ple19I	CGATCG	1 cut(s)	250
PspFI	CCCAGC	2 cut(s)	182, 272
PspN4I	GGNNCC	1 cut(s)	148
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	1 cut(s)	247
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	151, 164
SetI	ASST	4 cut(s)	64, 81, 175, 222
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.