Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011133

Physical Location & Seq

Genomic Coordinates Forward (+)

8328023 .. 8328833

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G007840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTCGCCTCAGCGCTTTGGCTTTCGTTTTCTTGATGGTGTTTGCCACGGTTGTGTCTACCTTAGAAGGAAGAAGGCTTTTCGACACGAATGAGTACCAGTTCAAGAACAAAGCTGCGTCGAATTCGTTGGATGGATCTCTGTTCCTGAGTGCCCTTCCGAAGGGTACGGTGCCGGCTTCCACCCCAAGCAAGAAGGGTCATGCGTTCGTCGTCGACGAGAAGCTCGTTGCTCGGAGGCATCTGGTTGGCAGCGATCGGTTTCTGCAGTCTGTTCCCAGCCCAGGAGTTGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.69

Weight (kDa)

10.11

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29290
fragaria_vesca	FvH4_3g07300
malus_domestica	MD00G1009200.v1.1 MD00G1221100.v1.1 MD10G1275500.v1.1
prunus_persica	Prupe.4G067000_v2.0.a1
pyrus_communis	pycom05g27420 pycom10g23010
rosa_chinensis	RchiOBHm_Chr5g0011661
rosa_laevigata	RLG00000031852
rosa_multiflora	Rmu_sc0000437.1_g000005 Rmu_sc0006382.1_g000003 Rmu_sc0017389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064850
rosa_rugosa	Rorug04G0458300
rosa_samantha	Rh5AG090100 Rh5BG085800 Rh5CG099500 Rh5DG085500
rosa_wichuraiana	Rw5G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccI	GTMKAC	2 cut(s)	59, 216
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	2 cut(s)	98, 169
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	163, 284, 290
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	283
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	2 cut(s)	116, 226
AluI	AGCT	2 cut(s)	116, 226
AlwI	GGATC	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	116, 252
ApoI	RAATTY	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	172
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	103, 264
BccI	CCATC	2 cut(s)	31, 128
BciT130I	CCWGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	2 cut(s)	117, 253
BlsI	GCNGC	2 cut(s)	118, 254
Bme1390I	CCNGG	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	48, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 284, 290
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	48, 283
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	163, 284, 290
BseMII	CTCAG	2 cut(s)	25, 140
BseNI	ACTGG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	157
BseXI	GCAGC	2 cut(s)	103, 264
BseYI	CCCAGC	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	3 cut(s)	163, 284, 290
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	137, 256
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	24, 141
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	48, 283
BssMI	GATC	2 cut(s)	137, 256
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	52, 172
BstC8I	GCNNGC	2 cut(s)	7, 177
BstDEI	CTNAG	3 cut(s)	11, 64, 149
BstDSI	CCRYGG	1 cut(s)	48
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	2 cut(s)	140, 259
BstMBI	GATC	2 cut(s)	137, 256
BstMCI	CGRYCG	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	103, 264
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	7, 177
CfoI	GCGC	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	175
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	97, 168
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	8 cut(s)	5, 23, 79, 116, 179, 226, 282, 294
CviKI_1	RGCY	8 cut(s)	5, 23, 79, 116, 179, 226, 282, 294
CviQI	GTAC	2 cut(s)	97, 168
DdeI	CTNAG	3 cut(s)	11, 64, 149
DpnI	GATC	2 cut(s)	139, 258
DpnII	GATC	2 cut(s)	137, 256
EaeI	YGGCCR	1 cut(s)	292
Eco47III	AGCGCT	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	206
FaiI	YATR	1 cut(s)	204
FatI	CATG	1 cut(s)	202
FblI	GTMKAC	2 cut(s)	59, 216
Fnu4HI	GCNGC	2 cut(s)	117, 253
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	117, 253
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	117, 253
GsaI	CCCAGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	2 cut(s)	60, 217
Hpy188I	TCNGA	2 cut(s)	162, 237
Hpy188III	TCNNGA	3 cut(s)	34, 106, 148
Hpy8I	GTNNAC	2 cut(s)	60, 217
Hpy99I	CGWCG	4 cut(s)	124, 215, 218, 221
HpyAV	CCTTC	5 cut(s)	62, 69, 157, 167, 190
HpyCH4III	ACNGT	2 cut(s)	52, 172
HpyCH4V	TGCA	1 cut(s)	268
HpyF3I	CTNAG	3 cut(s)	11, 64, 149
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	15
KroI	GCCGGC	1 cut(s)	175
KroNI	GCCGGC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	137, 256
LpnPI	CCDG	6 cut(s)	113, 161, 189, 230, 270, 292
Lsp1109I	GCAGC	2 cut(s)	103, 264
LweI	GCATC	1 cut(s)	250
MalI	GATC	2 cut(s)	139, 258
MboI	GATC	2 cut(s)	137, 256
MboII	GAAGA	1 cut(s)	84
MflI	RGATCY	1 cut(s)	137
MhlI	GDGCHC	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	1 cut(s)	124
MluNI	TGGCCA	1 cut(s)	294
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	20, 231
Mox20I	TGGCCA	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	175
MscI	TGGCCA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
NaeI	GCCGGC	1 cut(s)	177
NdeII	GATC	2 cut(s)	137, 256
NgoMIV	GCCGGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 225
PdiI	GCCGGC	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	118, 254
Ple19I	CGATCG	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	259
RsaI	GTAC	2 cut(s)	98, 169
RsaNI	GTAC	2 cut(s)	97, 168
RseI	CAYNNNNRTG	1 cut(s)	53
SalI	GTCGAC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	117, 253
Sau3AI	GATC	2 cut(s)	137, 256
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	3 cut(s)	65, 118, 228
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	266
SgrDI	CGTCGACG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	52, 172
TaqI	TCGA	3 cut(s)	84, 122, 216
TasI	AATT	1 cut(s)	124
TseI	GCWGC	2 cut(s)	116, 252
Van91I	CCANNNNNTGG	1 cut(s)	290
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	124
XmiI	GTMKAC	2 cut(s)	59, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.