Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011133

Physical Location & Seq

Genomic Coordinates Reverse (-)

36675500 .. 36675790

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1275500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCCTCGTCTGAGCGCTTTCGCACTCATTTTCTTAGTGGTAATGGCCTCATTTGTGTCAATTCTAGAAAGCAGAAAGCTCTCGGATGTAAAGAAGGACGATGCCGAGTACAAGAAGAAAGAGGCTTCTCTGTTTCTAAGTGCCCTTCCGAAGGGCAACGTGCCTGCTTCTACCCCAAGCAAGAAGGGTCACGCCGTCGTCATCAACGAAAAGCTCATCGCACGCCATCTTAGCGTTGAACCAAATCGGATTCTGGCGCAGTCTGTTCCCAGCCCCGGCGTCGGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.38

Weight (kDa)

9.92

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29290
fragaria_vesca	FvH4_3g07300
malus_domestica	MD00G1009200.v1.1 MD00G1221100.v1.1 MD10G1275500.v1.1
prunus_persica	Prupe.4G067000_v2.0.a1
pyrus_communis	pycom05g27420 pycom10g23010
rosa_chinensis	RchiOBHm_Chr5g0011661
rosa_laevigata	RLG00000031852
rosa_multiflora	Rmu_sc0000437.1_g000005 Rmu_sc0006382.1_g000003 Rmu_sc0017389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064850
rosa_rugosa	Rorug04G0458300
rosa_samantha	Rh5AG090100 Rh5BG085800 Rh5CG099500 Rh5DG085500
rosa_wichuraiana	Rw5G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	283
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	110
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	151, 275, 281
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	2 cut(s)	79, 214
AluI	AGCT	2 cut(s)	79, 214
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	2 cut(s)	45, 283
AspLEI	GCGC	2 cut(s)	17, 259
AsuC2I	CCSGG	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	145
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 275, 281
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	151, 275, 281
BseSI	GKGCMC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	47, 285
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	3 cut(s)	151, 275, 281
BsnI	GGCC	2 cut(s)	47, 285
Bsp1286I	GDGCHC	1 cut(s)	145
BspANI	GGCC	2 cut(s)	47, 285
BssECI	CCNNGG	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	165, 223
BstDEI	CTNAG	4 cut(s)	11, 34, 137, 230
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	47, 285
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	165, 223
CfoI	GCGC	2 cut(s)	17, 259
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	6 cut(s)	47, 79, 125, 214, 273, 285
CviKI_1	RGCY	6 cut(s)	47, 79, 125, 214, 273, 285
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	4 cut(s)	11, 34, 137, 230
EaeI	YGGCCR	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	149
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	16, 258
GsaI	CCCAGC	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	47, 285
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	2 cut(s)	17, 259
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	2 cut(s)	15, 257
HinP1I	GCGC	2 cut(s)	15, 257
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	276
Hpy188I	TCNGA	4 cut(s)	12, 85, 150, 249
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	2 cut(s)	200, 284
HpyAV	CCTTC	4 cut(s)	88, 145, 155, 178
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	4 cut(s)	11, 34, 137, 230
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	2 cut(s)	15, 257
LpnPI	CCDG	3 cut(s)	177, 239, 283
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	188
MboII	GAAGA	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	3 cut(s)	15, 58, 115
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	276
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	3 cut(s)	81, 162, 216
SfaNI	GCATC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	162
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	64
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.