Plant protein of unknown function (DUF641)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29300 AT2G32130 |
| fragaria_vesca | FvH4_3g07250 FvH4_3g07250 |
| malus_domestica | MD00G1008600.v1.1 MD10G1275000.v1.1 |
| prunus_persica | Prupe.4G067400_v2.0.a1 |
| pyrus_communis | pycom05g27380 pycom10g22960 |
| rosa_chinensis | RchiOBHm_Chr5g0011811 |
| rosa_laevigata | RLG00000031863 |
| rosa_multiflora | Rmu_ssc0000357.1_g000004 |
| rosa_rugosa | Rorug04G0459400 |
| rosa_samantha | Rh5AG090900 Rh5BG086500 Rh5CG100300 Rh5DG086500 |
| rosa_wichuraiana | Rw5G007930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 89 |
| AccII | CGCG | 3 cut(s) | 830, 854, 1112 |
| AccIII | TCCGGA | 1 cut(s) | 1093 |
| AclI | AACGTT | 1 cut(s) | 804 |
| AclWI | GGATC | 5 cut(s) | 463, 637, 774, 933, 1145 |
| AcsI | RAATTY | 6 cut(s) | 148, 657, 664, 670, 889, 923 |
| AcuI | CTGAAG | 1 cut(s) | 302 |
| AcyI | GRCGYC | 1 cut(s) | 774 |
| AfaI | GTAC | 6 cut(s) | 199, 286, 338, 959, 1010, 1023 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 973, 1100, 1364 |
| AjiI | CACGTC | 1 cut(s) | 917 |
| AjnI | CCWGG | 3 cut(s) | 471, 989, 1341 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 587, 619 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 961, 993 |
| Alw21I | GWGCWC | 1 cut(s) | 901 |
| Alw26I | GTCTC | 5 cut(s) | 103, 168, 444, 640, 907 |
| AlwI | GGATC | 5 cut(s) | 463, 637, 774, 933, 1145 |
| Ama87I | CYCGRG | 6 cut(s) | 521, 910, 973, 1081, 1099, 1307 |
| Aor13HI | TCCGGA | 1 cut(s) | 1093 |
| AoxI | GGCC | 1 cut(s) | 833 |
| ApeKI | GCWGC | 1 cut(s) | 302 |
| ApoI | RAATTY | 6 cut(s) | 148, 657, 664, 670, 889, 923 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 167, 199 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 275 |
| AspLEI | GCGC | 1 cut(s) | 328 |
| AsuC2I | CCSGG | 5 cut(s) | 967, 974, 975, 1308, 1309 |
| AsuHPI | GGTGA | 3 cut(s) | 811, 833, 1280 |
| AsuII | TTCGAA | 2 cut(s) | 661, 927 |
| AvaI | CYCGRG | 6 cut(s) | 521, 910, 973, 1081, 1099, 1307 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 357, 390 |
| BanII | GRGCYC | 1 cut(s) | 901 |
| BbsI | GAAGAC | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 1 cut(s) | 901 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 4 cut(s) | 31, 316, 742, 1027 |
| BceAI | ACGGC | 1 cut(s) | 384 |
| BciT130I | CCWGG | 3 cut(s) | 473, 991, 1343 |
| BciVI | GTATCC | 1 cut(s) | 358 |
| BcnI | CCSGG | 5 cut(s) | 967, 974, 975, 1308, 1309 |
| BcoDI | GTCTC | 5 cut(s) | 103, 168, 444, 640, 907 |
| BfaI | CTAG | 2 cut(s) | 282, 770 |
| BfuI | GTATCC | 1 cut(s) | 358 |
| BglII | AGATCT | 2 cut(s) | 273, 710 |
| BisI | GCNGC | 5 cut(s) | 303, 360, 777, 780, 789 |
| BlpI | GCTNAGC | 1 cut(s) | 1156 |
| BlsI | GCNGC | 5 cut(s) | 304, 361, 778, 781, 790 |
| BmcAI | AGTACT | 3 cut(s) | 199, 959, 1010 |
| Bme1390I | CCNGG | 8 cut(s) | 473, 967, 974, 975, 991, 1308, 1309, 1343 |
| BmeT110I | CYCGRG | 6 cut(s) | 521, 910, 973, 1081, 1099, 1307 |
| BmgBI | CACGTC | 1 cut(s) | 917 |
| BmiI | GGNNCC | 1 cut(s) | 971 |
| BmrFI | CCNGG | 8 cut(s) | 473, 967, 974, 975, 991, 1308, 1309, 1343 |
| BoxI | GACNNNNGTC | 1 cut(s) | 95 |
| BpiI | GAAGAC | 1 cut(s) | 168 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1156 |
| Bpu14I | TTCGAA | 2 cut(s) | 661, 927 |
| BpuEI | CTTGAG | 2 cut(s) | 1033, 1203 |
| BpuMI | CCSGG | 5 cut(s) | 967, 974, 975, 1308, 1309 |
| Bsa29I | ATCGAT | 1 cut(s) | 555 |
| BsaHI | GRCGYC | 1 cut(s) | 774 |
| BsaI | GGTCTC | 2 cut(s) | 103, 640 |
| BsaJI | CCNNGG | 2 cut(s) | 973, 1307 |
| BsaWI | WCCGGW | 3 cut(s) | 1093, 1265, 1357 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 165, 195 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 973, 1100, 1364 |
| Bse1I | ACTGG | 1 cut(s) | 204 |
| BseAI | TCCGGA | 1 cut(s) | 1093 |
| BseBI | CCWGG | 3 cut(s) | 473, 991, 1343 |
| BseCI | ATCGAT | 1 cut(s) | 555 |
| BseDI | CCNNGG | 2 cut(s) | 973, 1307 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 973, 1100, 1364 |
| BseMII | CTCAG | 3 cut(s) | 433, 456, 633 |
| BseNI | ACTGG | 1 cut(s) | 204 |
| BseRI | GAGGAG | 1 cut(s) | 91 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| BseYI | CCCAGC | 1 cut(s) | 762 |
| Bsh1236I | CGCG | 3 cut(s) | 830, 854, 1112 |
| BshFI | GGCC | 1 cut(s) | 835 |
| BshVI | ATCGAT | 1 cut(s) | 555 |
| BsiHKAI | GWGCWC | 1 cut(s) | 901 |
| BsiHKCI | CYCGRG | 6 cut(s) | 521, 910, 973, 1081, 1099, 1307 |
| BsiSI | CCGG | 7 cut(s) | 967, 974, 1094, 1245, 1266, 1308, 1358 |
| BsiWI | CGTACG | 1 cut(s) | 336 |
| BslFI | GGGAC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 973, 1100, 1364 |
| BsmAI | GTCTC | 5 cut(s) | 103, 168, 444, 640, 907 |
| BsmBI | CGTCTC | 1 cut(s) | 907 |
| BsmFI | GGGAC | 1 cut(s) | 121 |
| BsnI | GGCC | 1 cut(s) | 835 |
| Bso31I | GGTCTC | 2 cut(s) | 103, 640 |
| BsoBI | CYCGRG | 6 cut(s) | 521, 910, 973, 1081, 1099, 1307 |
| Bsp119I | TTCGAA | 2 cut(s) | 661, 927 |
| Bsp1286I | GDGCHC | 1 cut(s) | 901 |
| Bsp13I | TCCGGA | 1 cut(s) | 1093 |
| Bsp1407I | TGTACA | 1 cut(s) | 1021 |
| Bsp143I | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1156 |
| Bsp68I | TCGCGA | 2 cut(s) | 830, 1112 |
| BspANI | GGCC | 1 cut(s) | 835 |
| BspCNI | CTCAG | 3 cut(s) | 432, 457, 632 |
| BspDI | ATCGAT | 1 cut(s) | 555 |
| BspEI | TCCGGA | 1 cut(s) | 1093 |
| BspFNI | CGCG | 3 cut(s) | 830, 854, 1112 |
| BspHI | TCATGA | 1 cut(s) | 1376 |
| BspLI | GGNNCC | 1 cut(s) | 971 |
| BspPI | GGATC | 5 cut(s) | 463, 637, 774, 933, 1145 |
| BspQI | GCTCTTC | 1 cut(s) | 375 |
| BspT104I | TTCGAA | 2 cut(s) | 661, 927 |
| BspTNI | GGTCTC | 2 cut(s) | 103, 640 |
| BsrGI | TGTACA | 1 cut(s) | 1021 |
| BsrI | ACTGG | 1 cut(s) | 204 |
| BssECI | CCNNGG | 2 cut(s) | 973, 1307 |
| BssMI | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| BssNI | GRCGYC | 1 cut(s) | 774 |
| Bst2UI | CCWGG | 3 cut(s) | 473, 991, 1343 |
| Bst4CI | ACNGT | 5 cut(s) | 823, 845, 1186, 1300, 1367 |
| Bst6I | CTCTTC | 2 cut(s) | 375, 573 |
| BstACI | GRCGYC | 1 cut(s) | 774 |
| BstAUI | TGTACA | 1 cut(s) | 1021 |
| BstBI | TTCGAA | 2 cut(s) | 661, 927 |
| BstC8I | GCNNGC | 1 cut(s) | 760 |
| BstDEI | CTNAG | 6 cut(s) | 77, 386, 419, 465, 619, 1156 |
| BstFNI | CGCG | 3 cut(s) | 830, 854, 1112 |
| BstHHI | GCGC | 1 cut(s) | 328 |
| BstKTI | GATC | 9 cut(s) | 225, 276, 471, 555, 632, 713, 769, 941, 1140 |
| BstMAI | GTCTC | 5 cut(s) | 103, 168, 444, 640, 907 |
| BstMBI | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 266, 308, 356, 368, 785, 788 |
| BstNI | CCWGG | 3 cut(s) | 473, 991, 1343 |
| BstNSI | RCATGY | 1 cut(s) | 1028 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 95 |
| BstSCI | CCNGG | 8 cut(s) | 471, 965, 972, 973, 989, 1306, 1307, 1341 |
| BstUI | CGCG | 3 cut(s) | 830, 854, 1112 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 168 |
| BstX2I | RGATCY | 6 cut(s) | 273, 468, 710, 766, 938, 1137 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 997 |
| BstYI | RGATCY | 6 cut(s) | 273, 468, 710, 766, 938, 1137 |
| Bsu15I | ATCGAT | 1 cut(s) | 555 |
| BsuI | GTATCC | 1 cut(s) | 358 |
| BsuRI | GGCC | 1 cut(s) | 835 |
| BsuTUI | ATCGAT | 1 cut(s) | 555 |
| BtgZI | GCGATG | 1 cut(s) | 1263 |
| BtrI | CACGTC | 1 cut(s) | 917 |
| BtsI | GCAGTG | 1 cut(s) | 1150 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 1150 |
| BtuMI | TCGCGA | 2 cut(s) | 830, 1112 |
| Cac8I | GCNNGC | 1 cut(s) | 760 |
| CciI | TCATGA | 1 cut(s) | 1376 |
| CfoI | GCGC | 1 cut(s) | 328 |
| Cfr9I | CCCGGG | 2 cut(s) | 973, 1307 |
| ClaI | ATCGAT | 1 cut(s) | 555 |
| CseI | GACGC | 2 cut(s) | 356, 782 |
| Csp6I | GTAC | 6 cut(s) | 198, 285, 337, 958, 1009, 1022 |
| CviAII | CATG | 2 cut(s) | 1025, 1377 |
| CviQI | GTAC | 6 cut(s) | 198, 285, 337, 958, 1009, 1022 |
| DdeI | CTNAG | 6 cut(s) | 77, 386, 419, 465, 619, 1156 |
| DpnI | GATC | 9 cut(s) | 224, 275, 470, 554, 631, 712, 768, 940, 1139 |
| DpnII | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| DraI | TTTAAA | 2 cut(s) | 192, 1315 |
| Eam1104I | CTCTTC | 2 cut(s) | 375, 573 |
| EarI | CTCTTC | 2 cut(s) | 375, 573 |
| EciI | GGCGGA | 2 cut(s) | 377, 775 |
| Ecl136II | GAGCTC | 1 cut(s) | 899 |
| Eco24I | GRGCYC | 1 cut(s) | 901 |
| Eco31I | GGTCTC | 2 cut(s) | 103, 640 |
| Eco53kI | GAGCTC | 1 cut(s) | 899 |
| Eco57I | CTGAAG | 1 cut(s) | 302 |
| Eco88I | CYCGRG | 6 cut(s) | 521, 910, 973, 1081, 1099, 1307 |
| EcoICRI | GAGCTC | 1 cut(s) | 899 |
| EcoRI | GAATTC | 1 cut(s) | 923 |
| EcoRII | CCWGG | 3 cut(s) | 471, 989, 1341 |
| EcoT38I | GRGCYC | 1 cut(s) | 901 |
| Esp3I | CGTCTC | 1 cut(s) | 907 |
| FaeI | CATG | 2 cut(s) | 1028, 1380 |
| FaqI | GGGAC | 1 cut(s) | 121 |
| FatI | CATG | 2 cut(s) | 1024, 1376 |
| FblI | GTMKAC | 1 cut(s) | 89 |
| Fnu4HI | GCNGC | 5 cut(s) | 303, 360, 777, 780, 789 |
| FriOI | GRGCYC | 1 cut(s) | 901 |
| Fsp4HI | GCNGC | 5 cut(s) | 303, 360, 777, 780, 789 |
| FspBI | CTAG | 2 cut(s) | 282, 770 |
| GlaI | GCGC | 1 cut(s) | 327 |
| GluI | GCNGC | 5 cut(s) | 303, 360, 777, 780, 789 |
| GsaI | CCCAGC | 1 cut(s) | 766 |
| HaeIII | GGCC | 1 cut(s) | 835 |
| HapII | CCGG | 7 cut(s) | 967, 974, 1094, 1245, 1266, 1308, 1358 |
| HgaI | GACGC | 2 cut(s) | 356, 782 |
| HhaI | GCGC | 1 cut(s) | 328 |
| Hin1I | GRCGYC | 1 cut(s) | 774 |
| Hin1II | CATG | 2 cut(s) | 1028, 1380 |
| Hin6I | GCGC | 1 cut(s) | 326 |
| HinP1I | GCGC | 1 cut(s) | 326 |
| HincII | GTYRAC | 4 cut(s) | 90, 946, 1078, 1363 |
| HindII | GTYRAC | 4 cut(s) | 90, 946, 1078, 1363 |
| HindIII | AAGCTT | 1 cut(s) | 721 |
| HpaI | GTTAAC | 2 cut(s) | 1078, 1363 |
| HpaII | CCGG | 7 cut(s) | 967, 974, 1094, 1245, 1266, 1308, 1358 |
| HphI | GGTGA | 3 cut(s) | 811, 833, 1280 |
| Hpy166II | GTNNAC | 7 cut(s) | 90, 802, 946, 1078, 1296, 1348, 1363 |
| Hpy188I | TCNGA | 4 cut(s) | 119, 321, 400, 1279 |
| Hpy8I | GTNNAC | 7 cut(s) | 90, 802, 946, 1078, 1296, 1348, 1363 |
| Hpy99I | CGWCG | 8 cut(s) | 91, 94, 158, 161, 170, 173, 350, 1117 |
| HpyAV | CCTTC | 3 cut(s) | 88, 418, 736 |
| HpyCH4III | ACNGT | 5 cut(s) | 823, 845, 1186, 1300, 1367 |
| HpyCH4IV | ACGT | 7 cut(s) | 86, 331, 704, 804, 916, 1115, 1179 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 266, 308, 356, 368, 785, 788 |
| HpyF3I | CTNAG | 6 cut(s) | 77, 386, 419, 465, 619, 1156 |
| HpySE526I | ACGT | 7 cut(s) | 86, 331, 704, 804, 916, 1115, 1179 |
| Hsp92I | GRCGYC | 1 cut(s) | 774 |
| Hsp92II | CATG | 2 cut(s) | 1028, 1380 |
| HspAI | GCGC | 1 cut(s) | 326 |
| Kpn2I | TCCGGA | 1 cut(s) | 1093 |
| KspAI | GTTAAC | 2 cut(s) | 1078, 1363 |
| Kzo9I | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| LguI | GCTCTTC | 1 cut(s) | 375 |
| LmnI | GCTCC | 4 cut(s) | 400, 475, 896, 904 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 282, 770 |
| MaeII | ACGT | 7 cut(s) | 86, 331, 704, 804, 916, 1115, 1179 |
| MaeIII | GTNAC | 4 cut(s) | 71, 532, 839, 1180 |
| MalI | GATC | 9 cut(s) | 224, 275, 470, 554, 631, 712, 768, 940, 1139 |
| MboI | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| MfeI | CAATTG | 1 cut(s) | 545 |
| MflI | RGATCY | 6 cut(s) | 273, 468, 710, 766, 938, 1137 |
| MhlI | GDGCHC | 1 cut(s) | 901 |
| MlyI | GAGTC | 5 cut(s) | 170, 847, 1091, 1262, 1348 |
| MmeI | TCCRAC | 2 cut(s) | 129, 585 |
| MnlI | CCTC | 6 cut(s) | 112, 486, 825, 913, 1059, 1196 |
| MroI | TCCGGA | 1 cut(s) | 1093 |
| MroXI | GAANNNNTTC | 1 cut(s) | 275 |
| MspA1I | CMGCKG | 1 cut(s) | 791 |
| MspI | CCGG | 7 cut(s) | 967, 974, 1094, 1245, 1266, 1308, 1358 |
| MspR9I | CCNGG | 8 cut(s) | 473, 967, 974, 975, 991, 1308, 1309, 1343 |
| MunI | CAATTG | 1 cut(s) | 545 |
| MvaI | CCWGG | 3 cut(s) | 473, 991, 1343 |
| MvnI | CGCG | 3 cut(s) | 830, 854, 1112 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 266, 308, 356, 368, 785, 788 |
| NciI | CCSGG | 5 cut(s) | 967, 974, 975, 1308, 1309 |
| NdeII | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| NlaIII | CATG | 2 cut(s) | 1028, 1380 |
| NlaIV | GGNNCC | 1 cut(s) | 971 |
| NmeAIII | GCCGAG | 1 cut(s) | 861 |
| NmuCI | GTSAC | 2 cut(s) | 839, 1180 |
| NruI | TCGCGA | 2 cut(s) | 830, 1112 |
| NspI | RCATGY | 1 cut(s) | 1028 |
| NspV | TTCGAA | 2 cut(s) | 661, 927 |
| PaeR7I | CTCGAG | 2 cut(s) | 521, 910 |
| PagI | TCATGA | 1 cut(s) | 1376 |
| PciSI | GCTCTTC | 1 cut(s) | 375 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 162, 165, 819 |
| PdmI | GAANNNNTTC | 1 cut(s) | 275 |
| PfeI | GAWTC | 8 cut(s) | 19, 114, 120, 433, 752, 860, 952, 1212 |
| Pfl23II | CGTACG | 1 cut(s) | 336 |
| PfoI | TCCNGGA | 1 cut(s) | 471 |
| PkrI | GCNGC | 5 cut(s) | 304, 361, 778, 781, 790 |
| PleI | GAGTC | 5 cut(s) | 170, 846, 1091, 1261, 1348 |
| PpsI | GAGTC | 5 cut(s) | 170, 846, 1091, 1261, 1348 |
| PshAI | GACNNNNGTC | 1 cut(s) | 95 |
| Psp124BI | GAGCTC | 1 cut(s) | 901 |
| Psp1406I | AACGTT | 1 cut(s) | 804 |
| Psp6I | CCWGG | 3 cut(s) | 471, 989, 1341 |
| PspFI | CCCAGC | 1 cut(s) | 762 |
| PspGI | CCWGG | 3 cut(s) | 471, 989, 1341 |
| PspLI | CGTACG | 1 cut(s) | 336 |
| PspN4I | GGNNCC | 1 cut(s) | 971 |
| PspXI | VCTCGAGB | 1 cut(s) | 521 |
| PsuI | RGATCY | 6 cut(s) | 273, 468, 710, 766, 938, 1137 |
| RruI | TCGCGA | 2 cut(s) | 830, 1112 |
| RsaI | GTAC | 6 cut(s) | 199, 286, 338, 959, 1010, 1023 |
| RsaNI | GTAC | 6 cut(s) | 198, 285, 337, 958, 1009, 1022 |
| SacI | GAGCTC | 1 cut(s) | 901 |
| SalI | GTCGAC | 1 cut(s) | 88 |
| SapI | GCTCTTC | 1 cut(s) | 375 |
| SatI | GCNGC | 5 cut(s) | 303, 360, 777, 780, 789 |
| Sau3AI | GATC | 9 cut(s) | 222, 273, 468, 552, 629, 710, 766, 938, 1137 |
| ScaI | AGTACT | 3 cut(s) | 199, 959, 1010 |
| SchI | GAGTC | 5 cut(s) | 170, 847, 1091, 1262, 1348 |
| ScrFI | CCNGG | 8 cut(s) | 473, 967, 974, 975, 991, 1308, 1309, 1343 |
| SduI | GDGCHC | 1 cut(s) | 901 |
| Sfr274I | CTCGAG | 2 cut(s) | 521, 910 |
| SfuI | TTCGAA | 2 cut(s) | 661, 927 |
| SgrDI | CGTCGACG | 1 cut(s) | 88 |
| SlaI | CTCGAG | 2 cut(s) | 521, 910 |
| SmaI | CCCGGG | 2 cut(s) | 975, 1309 |
| SmlI | CTYRAG | 4 cut(s) | 521, 910, 1012, 1218 |
| SmoI | CTYRAG | 4 cut(s) | 521, 910, 1012, 1218 |
| SspI | AATATT | 1 cut(s) | 652 |
| SspMI | CTAG | 2 cut(s) | 282, 770 |
| SstI | GAGCTC | 1 cut(s) | 901 |
| StyD4I | CCNGG | 8 cut(s) | 471, 965, 972, 973, 989, 1306, 1307, 1341 |
| TaaI | ACNGT | 5 cut(s) | 823, 845, 1186, 1300, 1367 |
| TaiI | ACGT | 7 cut(s) | 89, 334, 707, 807, 919, 1118, 1182 |
| TaqI | TCGA | 9 cut(s) | 89, 153, 186, 378, 522, 555, 661, 911, 927 |
| TaqII | GACCGA | 1 cut(s) | 622 |
| TatI | WGTACW | 4 cut(s) | 197, 957, 1008, 1021 |
| TauI | GCSGC | 4 cut(s) | 362, 779, 782, 791 |
| TfiI | GAWTC | 8 cut(s) | 19, 114, 120, 433, 752, 860, 952, 1212 |
| TscAI | CASTG | 2 cut(s) | 33, 1157 |
| TseFI | GTSAC | 2 cut(s) | 839, 1180 |
| TseI | GCWGC | 1 cut(s) | 302 |
| Tsp45I | GTSAC | 2 cut(s) | 839, 1180 |
| TspDTI | ATGAA | 5 cut(s) | 516, 573, 992, 1155, 1365 |
| TspGWI | ACGGA | 7 cut(s) | 126, 186, 324, 424, 551, 931, 1150 |
| TspMI | CCCGGG | 2 cut(s) | 973, 1307 |
| TspRI | CASTG | 2 cut(s) | 33, 1157 |
| XapI | RAATTY | 6 cut(s) | 148, 657, 664, 670, 889, 923 |
| XbaI | TCTAGA | 1 cut(s) | 769 |
| XceI | RCATGY | 1 cut(s) | 1028 |
| XhoI | CTCGAG | 2 cut(s) | 521, 910 |
| XmaI | CCCGGG | 2 cut(s) | 973, 1307 |
| XmiI | GTMKAC | 1 cut(s) | 89 |
| XmnI | GAANNNNTTC | 1 cut(s) | 275 |
| XspI | CTAG | 2 cut(s) | 282, 770 |
| ZrmI | AGTACT | 3 cut(s) | 199, 959, 1010 |