Plant protein of unknown function (DUF641)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29300 AT2G32130 |
| fragaria_vesca | FvH4_3g07250 FvH4_3g07250 |
| malus_domestica | MD00G1008600.v1.1 MD10G1275000.v1.1 |
| prunus_persica | Prupe.4G067400_v2.0.a1 |
| pyrus_communis | pycom05g27380 pycom10g22960 |
| rosa_chinensis | RchiOBHm_Chr5g0011811 |
| rosa_laevigata | RLG00000031863 |
| rosa_multiflora | Rmu_ssc0000357.1_g000004 |
| rosa_rugosa | Rorug04G0459400 |
| rosa_samantha | Rh5AG090900 Rh5BG086500 Rh5CG100300 Rh5DG086500 |
| rosa_wichuraiana | Rw5G007930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1236 |
| Acc36I | ACCTGC | 1 cut(s) | 385 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 322 |
| AccBSI | CCGCTC | 1 cut(s) | 197 |
| AccII | CGCG | 4 cut(s) | 116, 260, 413, 1094 |
| AccIII | TCCGGA | 1 cut(s) | 1075 |
| AclWI | GGATC | 4 cut(s) | 288, 660, 688, 729 |
| AcoI | YGGCCR | 2 cut(s) | 216, 309 |
| AcsI | RAATTY | 5 cut(s) | 905, 937, 1036, 1193, 1341 |
| AcyI | GRCGYC | 1 cut(s) | 1233 |
| AfaI | GTAC | 2 cut(s) | 449, 992 |
| AfeI | AGCGCT | 1 cut(s) | 210 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 154, 322, 655, 703, 717, 845 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 505 |
| AjnI | CCWGG | 1 cut(s) | 1305 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 161, 193 |
| Alw21I | GWGCWC | 4 cut(s) | 267, 381, 554, 1064 |
| Alw26I | GTCTC | 3 cut(s) | 10, 591, 1323 |
| AlwI | GGATC | 4 cut(s) | 288, 660, 688, 729 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 892 |
| Ama87I | CYCGRG | 3 cut(s) | 512, 955, 1271 |
| Aor13HI | TCCGGA | 1 cut(s) | 1075 |
| Aor51HI | AGCGCT | 1 cut(s) | 210 |
| AoxI | GGCC | 4 cut(s) | 216, 309, 432, 847 |
| ApeKI | GCWGC | 5 cut(s) | 251, 360, 427, 652, 1156 |
| ApoI | RAATTY | 5 cut(s) | 905, 937, 1036, 1193, 1341 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 88, 210, 238, 300 |
| AspLEI | GCGC | 2 cut(s) | 211, 277 |
| AsuC2I | CCSGG | 4 cut(s) | 698, 753, 1272, 1273 |
| AsuHPI | GGTGA | 5 cut(s) | 337, 937, 970, 1189, 1264 |
| AsuII | TTCGAA | 2 cut(s) | 765, 795 |
| AvaI | CYCGRG | 3 cut(s) | 512, 955, 1271 |
| BalI | TGGCCA | 1 cut(s) | 218 |
| BanII | GRGCYC | 3 cut(s) | 267, 381, 1064 |
| BauI | CACGAG | 1 cut(s) | 76 |
| BbsI | GAAGAC | 1 cut(s) | 1295 |
| Bbv12I | GWGCWC | 4 cut(s) | 267, 381, 554, 1064 |
| BbvI | GCAGC | 5 cut(s) | 263, 372, 439, 664, 1168 |
| BccI | CCATC | 3 cut(s) | 677, 786, 1009 |
| BceAI | ACGGC | 3 cut(s) | 324, 719, 1231 |
| BciT130I | CCWGG | 1 cut(s) | 1307 |
| BciVI | GTATCC | 1 cut(s) | 931 |
| BcnI | CCSGG | 4 cut(s) | 698, 753, 1272, 1273 |
| BcoDI | GTCTC | 3 cut(s) | 10, 591, 1323 |
| BfoI | RGCGCY | 1 cut(s) | 212 |
| BfuAI | ACCTGC | 1 cut(s) | 385 |
| BfuI | GTATCC | 1 cut(s) | 931 |
| BisI | GCNGC | 9 cut(s) | 252, 361, 392, 428, 577, 653, 1095, 1110, 1157 |
| BlsI | GCNGC | 9 cut(s) | 253, 362, 393, 429, 578, 654, 1096, 1111, 1158 |
| Bme1390I | CCNGG | 5 cut(s) | 698, 753, 1272, 1273, 1307 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 505 |
| BmeT110I | CYCGRG | 3 cut(s) | 512, 955, 1271 |
| BmiI | GGNNCC | 1 cut(s) | 1245 |
| BmrFI | CCNGG | 5 cut(s) | 698, 753, 1272, 1273, 1307 |
| BmrI | ACTGGG | 2 cut(s) | 727, 849 |
| BmsI | GCATC | 3 cut(s) | 396, 773, 1096 |
| BmuI | ACTGGG | 2 cut(s) | 727, 849 |
| BpiI | GAAGAC | 1 cut(s) | 1295 |
| BpmI | CTGGAG | 1 cut(s) | 980 |
| Bpu14I | TTCGAA | 2 cut(s) | 765, 795 |
| BpuMI | CCSGG | 4 cut(s) | 698, 753, 1272, 1273 |
| Bsa29I | ATCGAT | 3 cut(s) | 283, 341, 781 |
| BsaBI | GATNNNNATC | 1 cut(s) | 458 |
| BsaHI | GRCGYC | 1 cut(s) | 1233 |
| BsaI | GGTCTC | 1 cut(s) | 10 |
| BsaJI | CCNNGG | 3 cut(s) | 321, 981, 1271 |
| BsaWI | WCCGGW | 2 cut(s) | 1075, 1321 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 154, 322, 655, 703, 717, 845 |
| Bse118I | RCCGGY | 1 cut(s) | 147 |
| Bse1I | ACTGG | 3 cut(s) | 316, 722, 855 |
| Bse3DI | GCAATG | 3 cut(s) | 103, 815, 1132 |
| Bse8I | GATNNNNATC | 1 cut(s) | 458 |
| BseAI | TCCGGA | 1 cut(s) | 1075 |
| BseBI | CCWGG | 1 cut(s) | 1307 |
| BseCI | ATCGAT | 3 cut(s) | 283, 341, 781 |
| BseDI | CCNNGG | 3 cut(s) | 321, 981, 1271 |
| BseGI | GGATG | 1 cut(s) | 163 |
| BseJI | GATNNNNATC | 1 cut(s) | 458 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 154, 322, 655, 703, 717, 845 |
| BseMI | GCAATG | 3 cut(s) | 103, 815, 1132 |
| BseNI | ACTGG | 3 cut(s) | 316, 722, 855 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseX3I | CGGCCG | 1 cut(s) | 309 |
| BseXI | GCAGC | 5 cut(s) | 263, 372, 439, 664, 1168 |
| BseYI | CCCAGC | 1 cut(s) | 885 |
| BsgI | GTGCAG | 1 cut(s) | 1319 |
| Bsh1236I | CGCG | 4 cut(s) | 116, 260, 413, 1094 |
| Bsh1285I | CGRYCG | 2 cut(s) | 148, 312 |
| BshFI | GGCC | 4 cut(s) | 218, 311, 434, 849 |
| BshVI | ATCGAT | 3 cut(s) | 283, 341, 781 |
| BsiEI | CGRYCG | 2 cut(s) | 148, 312 |
| BsiHKAI | GWGCWC | 4 cut(s) | 267, 381, 554, 1064 |
| BsiHKCI | CYCGRG | 3 cut(s) | 512, 955, 1271 |
| BsiSI | CCGG | 9 cut(s) | 148, 231, 697, 753, 1065, 1076, 1272, 1322, 1334 |
| BsiWI | CGTACG | 1 cut(s) | 447 |
| BslFI | GGGAC | 2 cut(s) | 493, 713 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 154, 322, 655, 703, 717, 845 |
| BsmAI | GTCTC | 3 cut(s) | 10, 591, 1323 |
| BsmBI | CGTCTC | 1 cut(s) | 591 |
| BsmFI | GGGAC | 2 cut(s) | 493, 713 |
| BsmI | GAATGC | 2 cut(s) | 613, 791 |
| BsnI | GGCC | 4 cut(s) | 218, 311, 434, 849 |
| Bso31I | GGTCTC | 1 cut(s) | 10 |
| BsoBI | CYCGRG | 3 cut(s) | 512, 955, 1271 |
| Bsp119I | TTCGAA | 2 cut(s) | 765, 795 |
| Bsp1286I | GDGCHC | 4 cut(s) | 267, 381, 554, 1064 |
| Bsp13I | TCCGGA | 1 cut(s) | 1075 |
| Bsp143I | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| BspANI | GGCC | 4 cut(s) | 218, 311, 434, 849 |
| BspDI | ATCGAT | 3 cut(s) | 283, 341, 781 |
| BspEI | TCCGGA | 1 cut(s) | 1075 |
| BspFNI | CGCG | 4 cut(s) | 116, 260, 413, 1094 |
| BspLI | GGNNCC | 1 cut(s) | 1245 |
| BspMI | ACCTGC | 1 cut(s) | 385 |
| BspPI | GGATC | 4 cut(s) | 288, 660, 688, 729 |
| BspQI | GCTCTTC | 1 cut(s) | 230 |
| BspT104I | TTCGAA | 2 cut(s) | 765, 795 |
| BspTNI | GGTCTC | 1 cut(s) | 10 |
| BsrBI | CCGCTC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 3 cut(s) | 103, 815, 1132 |
| BsrFI | RCCGGY | 1 cut(s) | 147 |
| BsrI | ACTGG | 3 cut(s) | 316, 722, 855 |
| BssAI | RCCGGY | 1 cut(s) | 147 |
| BssECI | CCNNGG | 3 cut(s) | 321, 981, 1271 |
| BssMI | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| BssNI | GRCGYC | 1 cut(s) | 1233 |
| BssSI | CACGAG | 1 cut(s) | 76 |
| BssT1I | CCWWGG | 1 cut(s) | 981 |
| Bst2BI | CACGAG | 1 cut(s) | 76 |
| Bst2UI | CCWGG | 1 cut(s) | 1307 |
| Bst4CI | ACNGT | 2 cut(s) | 1264, 1294 |
| Bst6I | CTCTTC | 2 cut(s) | 168, 230 |
| BstACI | GRCGYC | 1 cut(s) | 1233 |
| BstBI | TTCGAA | 2 cut(s) | 765, 795 |
| BstC8I | GCNNGC | 3 cut(s) | 411, 432, 657 |
| BstDSI | CCRYGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 1 cut(s) | 163 |
| BstFNI | CGCG | 4 cut(s) | 116, 260, 413, 1094 |
| BstH2I | RGCGCY | 1 cut(s) | 212 |
| BstHHI | GCGC | 2 cut(s) | 211, 277 |
| BstKTI | GATC | 5 cut(s) | 283, 385, 668, 696, 724 |
| BstMAI | GTCTC | 3 cut(s) | 10, 591, 1323 |
| BstMBI | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| BstMCI | CGRYCG | 2 cut(s) | 148, 312 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 215, 257, 619, 783, 1091, 1123 |
| BstNI | CCWGG | 1 cut(s) | 1307 |
| BstSCI | CCNGG | 5 cut(s) | 696, 751, 1270, 1271, 1305 |
| BstUI | CGCG | 4 cut(s) | 116, 260, 413, 1094 |
| BstV1I | GCAGC | 5 cut(s) | 263, 372, 439, 664, 1168 |
| BstV2I | GAAGAC | 1 cut(s) | 1295 |
| BstX2I | RGATCY | 2 cut(s) | 665, 721 |
| BstYI | RGATCY | 2 cut(s) | 665, 721 |
| BstZI | CGGCCG | 1 cut(s) | 309 |
| Bsu15I | ATCGAT | 3 cut(s) | 283, 341, 781 |
| BsuI | GTATCC | 1 cut(s) | 931 |
| BsuRI | GGCC | 4 cut(s) | 218, 311, 434, 849 |
| BsuTUI | ATCGAT | 3 cut(s) | 283, 341, 781 |
| BtgI | CCRYGG | 1 cut(s) | 321 |
| BtsCI | GGATG | 1 cut(s) | 163 |
| BtsIMutI | CAGTG | 1 cut(s) | 862 |
| BveI | ACCTGC | 1 cut(s) | 385 |
| Cac8I | GCNNGC | 3 cut(s) | 411, 432, 657 |
| CaiI | CAGNNNCTG | 1 cut(s) | 892 |
| CfoI | GCGC | 2 cut(s) | 211, 277 |
| Cfr10I | RCCGGY | 1 cut(s) | 147 |
| Cfr9I | CCCGGG | 1 cut(s) | 1271 |
| ClaI | ATCGAT | 3 cut(s) | 283, 341, 781 |
| CseI | GACGC | 1 cut(s) | 640 |
| Csp6I | GTAC | 2 cut(s) | 448, 991 |
| CviAII | CATG | 7 cut(s) | 13, 436, 703, 1007, 1045, 1210, 1240 |
| CviQI | GTAC | 2 cut(s) | 448, 991 |
| DpnI | GATC | 5 cut(s) | 282, 384, 667, 695, 723 |
| DpnII | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| DriI | GACNNNNNGTC | 1 cut(s) | 505 |
| EaeI | YGGCCR | 2 cut(s) | 216, 309 |
| EagI | CGGCCG | 1 cut(s) | 309 |
| Eam1104I | CTCTTC | 2 cut(s) | 168, 230 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 505 |
| EarI | CTCTTC | 2 cut(s) | 168, 230 |
| EciI | GGCGGA | 3 cut(s) | 166, 700, 1083 |
| Ecl136II | GAGCTC | 3 cut(s) | 265, 379, 1062 |
| EclXI | CGGCCG | 1 cut(s) | 309 |
| Eco130I | CCWWGG | 1 cut(s) | 981 |
| Eco24I | GRGCYC | 3 cut(s) | 267, 381, 1064 |
| Eco31I | GGTCTC | 1 cut(s) | 10 |
| Eco32I | GATATC | 1 cut(s) | 345 |
| Eco47III | AGCGCT | 1 cut(s) | 210 |
| Eco52I | CGGCCG | 1 cut(s) | 309 |
| Eco53kI | GAGCTC | 3 cut(s) | 265, 379, 1062 |
| Eco88I | CYCGRG | 3 cut(s) | 512, 955, 1271 |
| EcoICRI | GAGCTC | 3 cut(s) | 265, 379, 1062 |
| EcoRII | CCWGG | 1 cut(s) | 1305 |
| EcoRV | GATATC | 1 cut(s) | 345 |
| EcoT14I | CCWWGG | 1 cut(s) | 981 |
| EcoT38I | GRGCYC | 3 cut(s) | 267, 381, 1064 |
| ErhI | CCWWGG | 1 cut(s) | 981 |
| Esp3I | CGTCTC | 1 cut(s) | 591 |
| FaeI | CATG | 7 cut(s) | 16, 439, 706, 1010, 1048, 1213, 1243 |
| FaqI | GGGAC | 2 cut(s) | 493, 713 |
| FatI | CATG | 7 cut(s) | 12, 435, 702, 1006, 1044, 1209, 1239 |
| FauI | CCCGC | 2 cut(s) | 1110, 1330 |
| Fnu4HI | GCNGC | 9 cut(s) | 252, 361, 392, 428, 577, 653, 1095, 1110, 1157 |
| FokI | GGATG | 1 cut(s) | 170 |
| FriOI | GRGCYC | 3 cut(s) | 267, 381, 1064 |
| Fsp4HI | GCNGC | 9 cut(s) | 252, 361, 392, 428, 577, 653, 1095, 1110, 1157 |
| GlaI | GCGC | 2 cut(s) | 210, 276 |
| GluI | GCNGC | 9 cut(s) | 252, 361, 392, 428, 577, 653, 1095, 1110, 1157 |
| GsaI | CCCAGC | 1 cut(s) | 889 |
| GsuI | CTGGAG | 1 cut(s) | 980 |
| HaeII | RGCGCY | 1 cut(s) | 212 |
| HaeIII | GGCC | 4 cut(s) | 218, 311, 434, 849 |
| HapII | CCGG | 9 cut(s) | 148, 231, 697, 753, 1065, 1076, 1272, 1322, 1334 |
| HgaI | GACGC | 1 cut(s) | 640 |
| HhaI | GCGC | 2 cut(s) | 211, 277 |
| Hin1I | GRCGYC | 1 cut(s) | 1233 |
| Hin1II | CATG | 7 cut(s) | 16, 439, 706, 1010, 1048, 1213, 1243 |
| Hin6I | GCGC | 2 cut(s) | 209, 275 |
| HinP1I | GCGC | 2 cut(s) | 209, 275 |
| HincII | GTYRAC | 1 cut(s) | 1237 |
| HindII | GTYRAC | 1 cut(s) | 1237 |
| HindIII | AAGCTT | 2 cut(s) | 521, 676 |
| HpaII | CCGG | 9 cut(s) | 148, 231, 697, 753, 1065, 1076, 1272, 1322, 1334 |
| HphI | GGTGA | 5 cut(s) | 337, 937, 970, 1189, 1264 |
| Hpy166II | GTNNAC | 5 cut(s) | 328, 978, 1101, 1237, 1312 |
| Hpy8I | GTNNAC | 5 cut(s) | 328, 978, 1101, 1237, 1312 |
| Hpy99I | CGWCG | 3 cut(s) | 634, 740, 1235 |
| HpyAV | CCTTC | 7 cut(s) | 148, 160, 484, 617, 811, 818, 1045 |
| HpyCH4III | ACNGT | 2 cut(s) | 1264, 1294 |
| HpyCH4IV | ACGT | 2 cut(s) | 446, 1233 |
| HpyCH4V | TGCA | 3 cut(s) | 972, 1132, 1300 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 215, 257, 619, 783, 1091, 1123 |
| HpySE526I | ACGT | 2 cut(s) | 446, 1233 |
| Hsp92I | GRCGYC | 1 cut(s) | 1233 |
| Hsp92II | CATG | 7 cut(s) | 16, 439, 706, 1010, 1048, 1213, 1243 |
| HspAI | GCGC | 2 cut(s) | 209, 275 |
| Kpn2I | TCCGGA | 1 cut(s) | 1075 |
| Kzo9I | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| LguI | GCTCTTC | 1 cut(s) | 230 |
| LmnI | GCTCC | 7 cut(s) | 262, 270, 376, 424, 619, 1067, 1243 |
| Lsp1109I | GCAGC | 5 cut(s) | 263, 372, 439, 664, 1168 |
| LweI | GCATC | 3 cut(s) | 396, 773, 1096 |
| MaeII | ACGT | 2 cut(s) | 446, 1233 |
| MaeIII | GTNAC | 3 cut(s) | 397, 1219, 1324 |
| MalI | GATC | 5 cut(s) | 282, 384, 667, 695, 723 |
| MbiI | CCGCTC | 1 cut(s) | 197 |
| MboI | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| MboII | GAAGA | 7 cut(s) | 182, 185, 217, 954, 1024, 1192, 1300 |
| MflI | RGATCY | 2 cut(s) | 665, 721 |
| MhlI | GDGCHC | 4 cut(s) | 267, 381, 554, 1064 |
| MlsI | TGGCCA | 1 cut(s) | 218 |
| MluCI | AATT | 7 cut(s) | 467, 644, 905, 937, 1036, 1193, 1341 |
| MluNI | TGGCCA | 1 cut(s) | 218 |
| MlyI | GAGTC | 4 cut(s) | 192, 482, 1073, 1223 |
| MmeI | TCCRAC | 3 cut(s) | 522, 567, 718 |
| MnlI | CCTC | 8 cut(s) | 74, 119, 122, 521, 953, 1004, 1041, 1195 |
| Mox20I | TGGCCA | 1 cut(s) | 218 |
| MroI | TCCGGA | 1 cut(s) | 1075 |
| MroXI | GAANNNNTTC | 4 cut(s) | 88, 210, 238, 300 |
| MscI | TGGCCA | 1 cut(s) | 218 |
| MseI | TTAA | 2 cut(s) | 1278, 1345 |
| MslI | CAYNNNNRTG | 2 cut(s) | 11, 404 |
| Msp20I | TGGCCA | 1 cut(s) | 218 |
| MspA1I | CMGCKG | 1 cut(s) | 576 |
| MspI | CCGG | 9 cut(s) | 148, 231, 697, 753, 1065, 1076, 1272, 1322, 1334 |
| MspR9I | CCNGG | 5 cut(s) | 698, 753, 1272, 1273, 1307 |
| Mva1269I | GAATGC | 2 cut(s) | 613, 791 |
| MvaI | CCWGG | 1 cut(s) | 1307 |
| MvnI | CGCG | 4 cut(s) | 116, 260, 413, 1094 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 215, 257, 619, 783, 1091, 1123 |
| NciI | CCSGG | 4 cut(s) | 698, 753, 1272, 1273 |
| NdeII | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| NlaIII | CATG | 7 cut(s) | 16, 439, 706, 1010, 1048, 1213, 1243 |
| NlaIV | GGNNCC | 1 cut(s) | 1245 |
| NmuCI | GTSAC | 3 cut(s) | 397, 1219, 1324 |
| NspV | TTCGAA | 2 cut(s) | 765, 795 |
| PaeR7I | CTCGAG | 1 cut(s) | 512 |
| PciSI | GCTCTTC | 1 cut(s) | 230 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 801 |
| PctI | GAATGC | 2 cut(s) | 613, 791 |
| PdmI | GAANNNNTTC | 4 cut(s) | 88, 210, 238, 300 |
| Pfl23II | CGTACG | 1 cut(s) | 447 |
| PflFI | GACNNNGTC | 1 cut(s) | 1232 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 322 |
| PfoI | TCCNGGA | 1 cut(s) | 696 |
| PkrI | GCNGC | 9 cut(s) | 253, 362, 393, 429, 578, 654, 1096, 1111, 1158 |
| PleI | GAGTC | 4 cut(s) | 191, 481, 1073, 1222 |
| PpsI | GAGTC | 4 cut(s) | 191, 481, 1073, 1222 |
| Psp124BI | GAGCTC | 3 cut(s) | 267, 381, 1064 |
| Psp6I | CCWGG | 1 cut(s) | 1305 |
| PspFI | CCCAGC | 1 cut(s) | 885 |
| PspGI | CCWGG | 1 cut(s) | 1305 |
| PspLI | CGTACG | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 1 cut(s) | 1245 |
| PstNI | CAGNNNCTG | 1 cut(s) | 892 |
| PsuI | RGATCY | 2 cut(s) | 665, 721 |
| PsyI | GACNNNGTC | 1 cut(s) | 1232 |
| RsaI | GTAC | 2 cut(s) | 449, 992 |
| RsaNI | GTAC | 2 cut(s) | 448, 991 |
| RseI | CAYNNNNRTG | 2 cut(s) | 11, 404 |
| SacI | GAGCTC | 3 cut(s) | 267, 381, 1064 |
| SapI | GCTCTTC | 1 cut(s) | 230 |
| SaqAI | TTAA | 2 cut(s) | 1278, 1345 |
| SatI | GCNGC | 9 cut(s) | 252, 361, 392, 428, 577, 653, 1095, 1110, 1157 |
| Sau3AI | GATC | 5 cut(s) | 280, 382, 665, 693, 721 |
| SchI | GAGTC | 4 cut(s) | 192, 482, 1073, 1223 |
| ScrFI | CCNGG | 5 cut(s) | 698, 753, 1272, 1273, 1307 |
| SduI | GDGCHC | 4 cut(s) | 267, 381, 554, 1064 |
| SfaNI | GCATC | 3 cut(s) | 396, 773, 1096 |
| Sfr274I | CTCGAG | 1 cut(s) | 512 |
| SfuI | TTCGAA | 2 cut(s) | 765, 795 |
| SlaI | CTCGAG | 1 cut(s) | 512 |
| SmaI | CCCGGG | 1 cut(s) | 1273 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 11, 404 |
| SmlI | CTYRAG | 1 cut(s) | 512 |
| SmoI | CTYRAG | 1 cut(s) | 512 |
| Sse9I | AATT | 7 cut(s) | 467, 644, 905, 937, 1036, 1193, 1341 |
| SstI | GAGCTC | 3 cut(s) | 267, 381, 1064 |
| StyD4I | CCNGG | 5 cut(s) | 696, 751, 1270, 1271, 1305 |
| StyI | CCWWGG | 1 cut(s) | 981 |
| TaaI | ACNGT | 2 cut(s) | 1264, 1294 |
| TaiI | ACGT | 2 cut(s) | 449, 1236 |
| TaqII | GACCGA | 1 cut(s) | 34 |
| TasI | AATT | 7 cut(s) | 467, 644, 905, 937, 1036, 1193, 1341 |
| TauI | GCSGC | 4 cut(s) | 394, 579, 1097, 1112 |
| Tru1I | TTAA | 2 cut(s) | 1278, 1345 |
| Tru9I | TTAA | 2 cut(s) | 1278, 1345 |
| TscAI | CASTG | 1 cut(s) | 862 |
| TseFI | GTSAC | 3 cut(s) | 397, 1219, 1324 |
| TseI | GCWGC | 5 cut(s) | 251, 360, 427, 652, 1156 |
| Tsp45I | GTSAC | 3 cut(s) | 397, 1219, 1324 |
| TspDTI | ATGAA | 4 cut(s) | 455, 733, 995, 1198 |
| TspGWI | ACGGA | 3 cut(s) | 138, 310, 573 |
| TspMI | CCCGGG | 1 cut(s) | 1271 |
| TspRI | CASTG | 1 cut(s) | 862 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1232 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 322 |
| XapI | RAATTY | 5 cut(s) | 905, 937, 1036, 1193, 1341 |
| XhoI | CTCGAG | 1 cut(s) | 512 |
| XmaI | CCCGGG | 1 cut(s) | 1271 |
| XmnI | GAANNNNTTC | 4 cut(s) | 88, 210, 238, 300 |
| ZraI | GACGTC | 1 cut(s) | 1234 |