FvH4_3g07250

Plant protein of unknown function (DUF641)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
4300573 .. 4303345
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07250.t2

Sequence Viewer

Length: 1335 bp
ATGATGAATACAGTCAGACCCAAATCGGCTCCGATCAAGAAGAGCAAGCTTTCCAGGACGTTCCACAAGGTCATCAGCCTCCGAGCCGCGACCAAAATCGCTTCCAACAATGGCATTTGCAAGCTCAAACCCAACACCAAGGCCACCAAAGAGGAACACGATATCGAAAAAATGGAGGATCTTAAAGCCAAGAACAGGGCAGTCATGGAGGCTTTACTTGCCAAGCTCTTTGCCGGAATCACTTCCATTAAAGCAGCTTATGCCGAGCTCCAAATGGCGCAGAACCCTTACAACAACGAAGCCATTCAGGTGGCTGACCAGGCCGTAGTGGACGAGCTCAAAGCCATTTCGGAAATGAAGCGCAGCTTCCTTAAGAAAGAGCTCGATCTCTCTCCTCAGGTGACTCTAATGCTCGCCGAGATTCAAGAGCAACAGGGACTAATGAAGACGTACGAGATCACCATCAAGAAACTCGAGCTAGAAGCTCAGCGCAAAGCCTTCAGTCTTTCCGAACTCCAATCCGAACTCGAAGAACTACTCGCAACCAACAGAGGCATCGAATACAAGCTCAAATCCAGCGGCCCGCTCTCGATCTTCGACAACCTCCGCCTCTCAAAACTAACACCAACGCATTTCGCGCAGTTTCATCAGCAGACCGTAAGATCCATACGAAGCTTTGTGAAACTAATGATCAAGGAAATGGAGTCTGCAAGCTGGGACCTCGACACAGCCATCAAGTTCATCGAGCCAGAAGCAGAGTTCACTAAGCAAAGCCATCGCTGCTTCGCGTTCGAGTCTTTCTTTAGCAAAACCATGCTCGAAGGCTTCACTAACCCAAACTTCGGACTCCCTAGTACTCACAAAACACAACACTACTTCGACCAGTTCAACAACCTCAAACAAGCAAACCCAAAGTCCTTCATCTCCCAGAACCAAACAGCTTTGTTCTCTAAGTTCACAAGAGCCAAGTACCTCCAACTAGTCCACGCCAAAATGGAGTGCTCCCTCTTCGGGAACTTAAACCAGAGAAAGCTCATAAACTCCGGCGAGGTTCCCGATACGCCGTTTTTCGAAGCCTTTGTTGAGATGTCCATGCGGGTTTGGCTTCTCCACTGCTTGGCCTTCTCGTTCGGTCAGCAAGTCTCGATCTTTCAGGTCAACAAGAACCGCAGATTCTCAGAGGTGTTCATGGAGTCCGTCACCGTCAACGATTCCGATACCGAGTTTTCAGTCAGCTTCACCGTCGTGCCGGGGTTCACAATCGGGAAGATGTTGTTCCAGAGCTTGGTTTACTTGTCTCCGGTGAGTAGTAGTCTCCGGCGAATATACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

50.7

Weight (kDa)

9.32

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 64 - 186 4.3e-38 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 382 - 430 1.3e-14 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013266)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1117, 1285
AccBSI CCGCTC 1 cut(s) 586
AccII CGCG 3 cut(s) 89, 638, 788
AciI CCGC 6 cut(s) 87, 579, 584, 607, 1096, 1168
AclWI GGATC 2 cut(s) 186, 657
AcuI CTGAAG 1 cut(s) 484
AfaI GTAC 3 cut(s) 452, 856, 971
AfiI CCNNNNNNNGG 5 cut(s) 195, 842, 1011, 1117, 1285
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 2 cut(s) 425, 889
AhlI ACTAGT 1 cut(s) 979
AjnI CCWGG 2 cut(s) 53, 318
AleI CACNNNNGTG 1 cut(s) 1244
Alw21I GWGCWC 4 cut(s) 270, 339, 384, 1004
Alw26I GTCTC 3 cut(s) 1147, 1302, 1319
AlwI GGATC 2 cut(s) 186, 657
Ama87I CYCGRG 1 cut(s) 473
AoxI GGCC 4 cut(s) 141, 321, 580, 1119
ApeKI GCWGC 3 cut(s) 254, 363, 780
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
Asp700I GAANNNNTTC 2 cut(s) 241, 303
AspLEI GCGC 4 cut(s) 280, 363, 492, 640
AspS9I GGNCC 2 cut(s) 581, 718
AsuC2I CCSGG 1 cut(s) 1251
AsuHPI GGTGA 5 cut(s) 412, 451, 1192, 1231, 1315
AsuII TTCGAA 1 cut(s) 1071
AvaI CYCGRG 1 cut(s) 473
AvaII GGWCC 1 cut(s) 718
AxyI CCTNAGG 1 cut(s) 396
BanII GRGCYC 3 cut(s) 270, 339, 384
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 4 cut(s) 270, 339, 384, 1004
BbvI GCAGC 3 cut(s) 266, 375, 767
BccI CCATC 3 cut(s) 470, 740, 783
BceAI ACGGC 2 cut(s) 308, 1048
BcgI CGANNNNNNTGC 2 cut(s) 758, 792
BciT130I CCWGG 2 cut(s) 55, 320
BclI TGATCA 1 cut(s) 690
BcnI CCSGG 1 cut(s) 1251
BcoDI GTCTC 3 cut(s) 1147, 1302, 1319
BcuI ACTAGT 1 cut(s) 979
BfaI CTAG 4 cut(s) 479, 852, 980, 1333
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 5 cut(s) 87, 255, 364, 580, 781
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 5 cut(s) 88, 256, 365, 581, 782
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 3 cut(s) 55, 320, 1251
Bme18I GGWCC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 581, 718
BmiI GGNNCC 3 cut(s) 30, 719, 1053
BmrFI CCNGG 3 cut(s) 55, 320, 1251
BmsI GCATC 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 452
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 1071
BpuMI CCSGG 1 cut(s) 1251
BsaBI GATNNNNATC 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 138, 1250
BsaWI WCCGGW 1 cut(s) 1300
Bsc4I CCNNNNNNNGG 5 cut(s) 195, 842, 1011, 1117, 1285
Bse1I ACTGG 1 cut(s) 883
Bse21I CCTNAGG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 461
BseBI CCWGG 2 cut(s) 55, 320
BseDI CCNNGG 2 cut(s) 138, 1250
BseJI GATNNNNATC 1 cut(s) 461
BseLI CCNNNNNNNGG 5 cut(s) 195, 842, 1011, 1117, 1285
BseMII CTCAG 3 cut(s) 410, 500, 1191
BseNI ACTGG 1 cut(s) 883
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 266, 375, 767
BseYI CCCAGC 1 cut(s) 714
Bsh1236I CGCG 3 cut(s) 89, 638, 788
BshFI GGCC 4 cut(s) 143, 323, 582, 1121
BsiHKAI GWGCWC 4 cut(s) 270, 339, 384, 1004
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 5 cut(s) 234, 1044, 1250, 1301, 1318
BsiWI CGTACG 1 cut(s) 450
BslFI GGGAC 2 cut(s) 450, 731
BslI CCNNNNNNNGG 5 cut(s) 195, 842, 1011, 1117, 1285
BsmAI GTCTC 3 cut(s) 1147, 1302, 1319
BsmFI GGGAC 2 cut(s) 450, 731
BsnI GGCC 4 cut(s) 143, 323, 582, 1121
BsoBI CYCGRG 1 cut(s) 473
Bsp119I TTCGAA 1 cut(s) 1071
Bsp1286I GDGCHC 4 cut(s) 270, 339, 384, 1004
Bsp143I GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 6 cut(s) 87, 579, 584, 607, 1096, 1168
BspANI GGCC 4 cut(s) 143, 323, 582, 1121
BspCNI CTCAG 3 cut(s) 409, 499, 1190
BspFNI CGCG 3 cut(s) 89, 638, 788
BspLI GGNNCC 3 cut(s) 30, 719, 1053
BspPI GGATC 2 cut(s) 186, 657
BspQI GCTCTTC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 1071
BspTI CTTAAG 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 586
BsrI ACTGG 1 cut(s) 883
BssECI CCNNGG 2 cut(s) 138, 1250
BssMI GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 55, 320
Bst4CI ACNGT 4 cut(s) 13, 658, 1204, 1243
Bst6I CTCTTC 2 cut(s) 35, 1013
BstAFI CTTAAG 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 1071
BstC8I GCNNGC 5 cut(s) 47, 122, 414, 584, 712
BstDEI CTNAG 5 cut(s) 396, 486, 765, 951, 1177
BstFNI CGCG 3 cut(s) 89, 638, 788
BstHHI GCGC 4 cut(s) 280, 363, 492, 640
BstKTI GATC 8 cut(s) 36, 181, 388, 459, 594, 665, 693, 1149
BstMAI GTCTC 3 cut(s) 1147, 1302, 1319
BstMBI GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
BstMWI GCNNNNNNNGC 6 cut(s) 218, 260, 320, 637, 780, 1102
BstNI CCWGG 2 cut(s) 55, 320
BstSCI CCNGG 3 cut(s) 53, 318, 1249
BstUI CGCG 3 cut(s) 89, 638, 788
BstV1I GCAGC 3 cut(s) 266, 375, 767
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 178, 662
BstXI CCANNNNNNTGG 1 cut(s) 310
BstYI RGATCY 2 cut(s) 178, 662
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 4 cut(s) 143, 323, 582, 1121
BtgZI GCGATG 1 cut(s) 761
BtsI GCAGTG 1 cut(s) 1111
BtsIMutI CAGTG 1 cut(s) 1111
Cac8I GCNNGC 5 cut(s) 47, 122, 414, 584, 712
CfoI GCGC 4 cut(s) 280, 363, 492, 640
Cfr13I GGNCC 2 cut(s) 581, 718
Csp6I GTAC 3 cut(s) 451, 855, 970
CviAII CATG 4 cut(s) 205, 814, 1093, 1189
CviQI GTAC 3 cut(s) 451, 855, 970
DdeI CTNAG 5 cut(s) 396, 486, 765, 951, 1177
DpnI GATC 8 cut(s) 35, 180, 387, 458, 593, 664, 692, 1148
DpnII GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
Eam1104I CTCTTC 2 cut(s) 35, 1013
EarI CTCTTC 2 cut(s) 35, 1013
EciI GGCGGA 1 cut(s) 596
Ecl136II GAGCTC 3 cut(s) 268, 337, 382
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 3 cut(s) 270, 339, 384
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 718
Eco53kI GAGCTC 3 cut(s) 268, 337, 382
Eco57I CTGAAG 1 cut(s) 484
Eco81I CCTNAGG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 473
EcoICRI GAGCTC 3 cut(s) 268, 337, 382
EcoO109I RGGNCCY 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 53, 318
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 138
EcoT38I GRGCYC 3 cut(s) 270, 339, 384
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 208, 817, 1096, 1192
FaiI YATR 8 cut(s) 206, 261, 668, 815, 1037, 1094, 1190, 1327
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 2 cut(s) 450, 731
FatI CATG 4 cut(s) 204, 813, 1092, 1188
FauI CCCGC 2 cut(s) 591, 1089
FbaI TGATCA 1 cut(s) 690
Fnu4HI GCNGC 5 cut(s) 87, 255, 364, 580, 781
FriOI GRGCYC 3 cut(s) 270, 339, 384
Fsp4HI GCNGC 5 cut(s) 87, 255, 364, 580, 781
FspBI CTAG 4 cut(s) 479, 852, 980, 1333
GlaI GCGC 4 cut(s) 279, 362, 491, 639
GluI GCNGC 5 cut(s) 87, 255, 364, 580, 781
GsaI CCCAGC 1 cut(s) 718
HaeIII GGCC 4 cut(s) 143, 323, 582, 1121
HapII CCGG 5 cut(s) 234, 1044, 1250, 1301, 1318
HhaI GCGC 4 cut(s) 280, 363, 492, 640
Hin1II CATG 4 cut(s) 208, 817, 1096, 1192
Hin6I GCGC 4 cut(s) 278, 361, 490, 638
HinP1I GCGC 4 cut(s) 278, 361, 490, 638
HincII GTYRAC 2 cut(s) 1159, 1207
HindII GTYRAC 2 cut(s) 1159, 1207
HindIII AAGCTT 2 cut(s) 47, 673
HinfI GANTC 9 cut(s) 237, 403, 421, 704, 794, 846, 1173, 1193, 1211
HpaII CCGG 5 cut(s) 234, 1044, 1250, 1301, 1318
HphI GGTGA 5 cut(s) 412, 451, 1192, 1231, 1315
Hpy166II GTNNAC 8 cut(s) 331, 762, 957, 985, 1159, 1207, 1257, 1291
Hpy188I TCNGA 9 cut(s) 17, 33, 83, 352, 511, 523, 845, 1180, 1216
Hpy188III TCNNGA 9 cut(s) 37, 425, 466, 589, 1012, 1055, 1144, 1264, 1279
Hpy8I GTNNAC 8 cut(s) 331, 762, 957, 985, 1159, 1207, 1257, 1291
Hpy99I CGWCG 1 cut(s) 1247
HpyAV CCTTC 4 cut(s) 508, 815, 928, 1132
HpyCH4III ACNGT 4 cut(s) 13, 658, 1204, 1243
HpyCH4IV ACGT 2 cut(s) 59, 449
HpyCH4V TGCA 2 cut(s) 120, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 218, 260, 320, 637, 780, 1102
HpyF3I CTNAG 5 cut(s) 396, 486, 765, 951, 1177
HpySE526I ACGT 2 cut(s) 59, 449
Hsp92II CATG 4 cut(s) 208, 817, 1096, 1192
HspAI GCGC 4 cut(s) 278, 361, 490, 638
Ksp22I TGATCA 1 cut(s) 690
Kzo9I GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 3 cut(s) 34, 273, 1007
Lsp1109I GCAGC 3 cut(s) 266, 375, 767
LweI GCATC 1 cut(s) 564
MaeI CTAG 4 cut(s) 479, 852, 980, 1333
MaeII ACGT 2 cut(s) 59, 449
MaeIII GTNAC 2 cut(s) 400, 1198
MalI GATC 8 cut(s) 35, 180, 387, 458, 593, 664, 692, 1148
MbiI CCGCTC 1 cut(s) 586
MboI GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
MboII GAAGA 6 cut(s) 52, 457, 542, 586, 1000, 1279
MflI RGATCY 2 cut(s) 178, 662
MhlI GDGCHC 4 cut(s) 270, 339, 384, 1004
MlyI GAGTC 5 cut(s) 397, 713, 803, 840, 1202
MmeI TCCRAC 2 cut(s) 129, 1000
MroXI GAANNNNTTC 2 cut(s) 241, 303
MseI TTAA 4 cut(s) 183, 249, 372, 1019
MslI CAYNNNNRTG 2 cut(s) 308, 1244
MspA1I CMGCKG 1 cut(s) 579
MspCI CTTAAG 1 cut(s) 371
MspI CCGG 5 cut(s) 234, 1044, 1250, 1301, 1318
MspR9I CCNGG 3 cut(s) 55, 320, 1251
MvaI CCWGG 2 cut(s) 55, 320
MvnI CGCG 3 cut(s) 89, 638, 788
MwoI GCNNNNNNNGC 6 cut(s) 218, 260, 320, 637, 780, 1102
NciI CCSGG 1 cut(s) 1251
NdeII GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
NlaIII CATG 4 cut(s) 208, 817, 1096, 1192
NlaIV GGNNCC 3 cut(s) 30, 719, 1053
NmeAIII GCCGAG 2 cut(s) 289, 442
NmuCI GTSAC 2 cut(s) 400, 1198
NspV TTCGAA 1 cut(s) 1071
OliI CACNNNNGTG 1 cut(s) 1244
PaeR7I CTCGAG 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 35
PdmI GAANNNNTTC 2 cut(s) 241, 303
PfeI GAWTC 4 cut(s) 237, 421, 1173, 1211
Pfl23II CGTACG 1 cut(s) 450
PflMI CCANNNNNTGG 2 cut(s) 1117, 1285
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 5 cut(s) 88, 256, 365, 581, 782
PleI GAGTC 5 cut(s) 397, 712, 802, 840, 1201
PpsI GAGTC 5 cut(s) 397, 712, 802, 840, 1201
PpuMI RGGWCCY 1 cut(s) 718
Psp124BI GAGCTC 3 cut(s) 270, 339, 384
Psp5II RGGWCCY 1 cut(s) 718
Psp6I CCWGG 2 cut(s) 53, 318
PspFI CCCAGC 1 cut(s) 714
PspGI CCWGG 2 cut(s) 53, 318
PspLI CGTACG 1 cut(s) 450
PspN4I GGNNCC 3 cut(s) 30, 719, 1053
PspPI GGNCC 2 cut(s) 581, 718
PspPPI RGGWCCY 1 cut(s) 718
PspXI VCTCGAGB 1 cut(s) 473
PsuI RGATCY 2 cut(s) 178, 662
RsaI GTAC 3 cut(s) 452, 856, 971
RsaNI GTAC 3 cut(s) 451, 855, 970
RseI CAYNNNNRTG 2 cut(s) 308, 1244
SacI GAGCTC 3 cut(s) 270, 339, 384
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 4 cut(s) 183, 249, 372, 1019
SatI GCNGC 5 cut(s) 87, 255, 364, 580, 781
Sau3AI GATC 8 cut(s) 33, 178, 385, 456, 591, 662, 690, 1146
Sau96I GGNCC 2 cut(s) 581, 718
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 5 cut(s) 397, 713, 803, 840, 1202
ScrFI CCNGG 3 cut(s) 55, 320, 1251
SduI GDGCHC 4 cut(s) 270, 339, 384, 1004
SfaNI GCATC 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 473
SfuI TTCGAA 1 cut(s) 1071
SinI GGWCC 1 cut(s) 718
SlaI CTCGAG 1 cut(s) 473
SmiMI CAYNNNNRTG 2 cut(s) 308, 1244
SmlI CTYRAG 2 cut(s) 371, 473
SmoI CTYRAG 2 cut(s) 371, 473
SpeI ACTAGT 1 cut(s) 979
SsiI CCGC 6 cut(s) 87, 579, 584, 607, 1096, 1168
SspMI CTAG 4 cut(s) 479, 852, 980, 1333
SstI GAGCTC 3 cut(s) 270, 339, 384
StyD4I CCNGG 3 cut(s) 53, 318, 1249
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 4 cut(s) 13, 658, 1204, 1243
TaiI ACGT 2 cut(s) 62, 452
TaqII GACCGA 1 cut(s) 1121
TatI WGTACW 1 cut(s) 854
TauI GCSGC 2 cut(s) 89, 582
TfiI GAWTC 4 cut(s) 237, 421, 1173, 1211
Tru1I TTAA 4 cut(s) 183, 249, 372, 1019
Tru9I TTAA 4 cut(s) 183, 249, 372, 1019
TscAI CASTG 1 cut(s) 1118
TseFI GTSAC 2 cut(s) 400, 1198
TseI GCWGC 3 cut(s) 254, 363, 780
Tsp45I GTSAC 2 cut(s) 400, 1198
TspDTI ATGAA 7 cut(s) 20, 371, 458, 635, 730, 910, 1177
TspGWI ACGGA 1 cut(s) 1186
TspRI CASTG 1 cut(s) 1118
Van91I CCANNNNNTGG 2 cut(s) 1117, 1285
Vha464I CTTAAG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 718
XhoI CTCGAG 1 cut(s) 473
XmnI GAANNNNTTC 2 cut(s) 241, 303
XspI CTAG 4 cut(s) 479, 852, 980, 1333
ZrmI AGTACT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.