Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010749

Physical Location & Seq

Genomic Coordinates Forward (+)

10252241 .. 10254792

Gene Structure 2552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCTTGGCTTTTCTTCCAGAAGTGCAAAGTGCTGACAGGAAGATTCCATTTAGAGAGAAAGTGATCTACACTGTCATCTCCCTCTTCATTTTCCTTGTTTGTAGTCAGCTTCCTCTCTATGGGATCCATTCTACCACCGGTGCTGATCCGTTCTATTGGATGCGTGTCATTCTCGCATCGAATCGTGGAACGGTGATGGAGCTTGGTATTACTCCTATTGTCACATCTGGATTAGTGATGCAACTCTTAGCAGGGTCAAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCTCTCTTGAATGGTGCTCAGAAGCTTCTTGGGATTCTGATTGCTATTGGTGAGGCTGTTGCATATGTTCTTTCGGGAATGTATGGTCCTGTTGGTCAACTTGGTGTTGGAAATGCTATTCTGATCATCCTCCAGCTTTTCTTTGCTGGAATCATCGTTATCTGTCTTGACGAGCTTCTTCAGAAGGGATATGGTCTTGGCTCTGGAATCTCTCTTTTCATAGCAACCAATATCTGTGAAAGCATTATCTGGAAAGCATTTAGCCCCACGACAATCAACACTGGTCGTGGAGCTGAGTTTGAAGGCGCTGTGATTGCGTTGTTCCATATGCTGATAACTAAGTCCAATAAGGTTGCTGCGCTCAGACAAGCTTTTTACCGGCAGAACCTTCCAAATGTTACCAACTTGCTTGCAACAGTGTTGATCTTCTTGATTGTTATATACTTCCAAGGCTTCCGTGTTGTGTTGCCCGTGAGGTCAAAGAGTGCTCGTGGCCAACAGGGTTCATACCCGATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTCCAGTCTGCTCTCGTCTCAAACCTCTACTTCATCTCTCAGCTTCTCTACAGGAAATTCAGTGGAAATTTCTTTGTGAACCTATTGGGACAGTGGAAAGAATCAGAGTACAGTGGACAATCTATACCAGTTAGTGGTCTTGCATATTTGATCACAGCTCCGGCAAGTTTTGCCGATATGGCAGCTCATCCATTCCATGCTCTGTTCTATATCGTCTTCATGCTCACTGCTTGTGCCCTATTCTCAAAAACATGGATTGAAGTCTCCGGGTCTTCTGCTAGAGATGTAGCTAAGCAGCTAAAGGAACAACAAATGGTGATGCCGGGACACAGAGAGTCCAACTTACAAAAGGAGCTGAACCGGTACATCCCAACAGCGGCTGCATTTGGAGGAGTGTGCATCGGTGCGCTCACTGTTTTGGCTGATTTCATGGGAGCCATTGGGTCGGGGACTGGAATCTTACTTGCAGTCACAATCATATATCAGTATTTTGAAACCTTTGAGAAGGAAAAAGCCAGCGAGCTTGGTTTCTTTGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

475

Amino Acids

52.07

Weight (kDa)

9.12

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plug_translocon	PF10559	42 - 76	1.1e-17	Plug domain of Sec61p
SecY	PF00344	77 - 459	3.9e-80	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29310 AT1G29310 AT2G34250 AT2G34250 AT2G34250
fragaria_vesca	FvH4_3g18150
malus_domestica	MD11G1265500.v1.1
prunus_persica	Prupe.4G160300_v2.0.a1 Prupe.8G009900_v2.0.a1
pyrus_communis	pycom11g23350
rosa_chinensis	RchiOBHm_Chr5g0030581
rosa_laevigata	RLG00000033229
rosa_multiflora	Rmu_ssc0000336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049720
rosa_rugosa	Rorug05G0118500
rosa_samantha	Rh5AG210800 Rh5BG209900 Rh5CG233600 Rh5DG214400
rosa_wichuraiana	Rw5G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AciI	CCGC	1 cut(s)	1262
AclWI	GGATC	4 cut(s)	157, 170, 179, 339
AcoI	YGGCCR	1 cut(s)	829
AcsI	RAATTY	2 cut(s)	941, 952
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	995, 1250
AfiI	CCNNNNNNNGG	3 cut(s)	158, 1019, 1261
AgeI	ACCGGT	2 cut(s)	176, 1245
AgsI	TTSAA	4 cut(s)	346, 638, 1145, 1379
Alw21I	GWGCWC	3 cut(s)	340, 355, 826
Alw26I	GTCTC	2 cut(s)	907, 1153
AlwI	GGATC	4 cut(s)	157, 170, 179, 339
AlwNI	CAGNNNCTG	1 cut(s)	1265
AoxI	GGCC	2 cut(s)	35, 829
ApeKI	GCWGC	4 cut(s)	692, 1067, 1180, 1265
ApoI	RAATTY	2 cut(s)	941, 952
AsiGI	ACCGGT	2 cut(s)	176, 1245
AspLEI	GCGC	3 cut(s)	644, 697, 1294
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	1153, 1209
AsuHPI	GGTGA	4 cut(s)	43, 244, 398, 1213
AvaII	GGWCC	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	1123
BalI	TGGCCA	1 cut(s)	831
BamHI	GGATCC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	825
BbsI	GAAGAC	2 cut(s)	1093, 1149
Bbv12I	GWGCWC	3 cut(s)	340, 355, 826
BbvI	GCAGC	4 cut(s)	679, 1079, 1192, 1252
BccI	CCATC	1 cut(s)	229
BclI	TGATCA	2 cut(s)	459, 1035
BcnI	CCSGG	2 cut(s)	1153, 1209
BcoDI	GTCTC	2 cut(s)	907, 1153
BfaI	CTAG	1 cut(s)	1164
BfmI	CTRYAG	1 cut(s)	934
BfoI	RGCGCY	1 cut(s)	645
BglI	GCCNNNNNGGC	1 cut(s)	1064
BisI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
BlpI	GCTNAGC	1 cut(s)	1176
BlsI	GCNGC	5 cut(s)	694, 1069, 1182, 1264, 1267
Bme1390I	CCNGG	2 cut(s)	1153, 1209
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	164, 1321
BmrFI	CCNGG	2 cut(s)	1153, 1209
BmsI	GCATC	5 cut(s)	189, 224, 267, 1194, 1293
BpiI	GAAGAC	2 cut(s)	1093, 1149
BpmI	CTGGAG	2 cut(s)	452, 872
Bpu1102I	GCTNAGC	1 cut(s)	1176
BpuMI	CCSGG	2 cut(s)	1153, 1209
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	2 cut(s)	176, 1245
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 1019, 1261
Bse118I	RCCGGY	3 cut(s)	176, 714, 1245
Bse1I	ACTGG	4 cut(s)	622, 889, 1013, 1342
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	4 cut(s)	204, 462, 1072, 1251
BseLI	CCNNNNNNNGG	3 cut(s)	158, 1019, 1261
BseMII	CTCAG	4 cut(s)	368, 621, 712, 938
BseNI	ACTGG	4 cut(s)	622, 889, 1013, 1342
BseRI	GAGGAG	2 cut(s)	21, 1290
BseSI	GKGCMC	1 cut(s)	1123
BseXI	GCAGC	4 cut(s)	679, 1079, 1192, 1252
BshFI	GGCC	2 cut(s)	37, 831
BshTI	ACCGGT	2 cut(s)	176, 1245
BsiHKAI	GWGCWC	3 cut(s)	340, 355, 826
BsiSI	CCGG	6 cut(s)	177, 715, 1046, 1152, 1208, 1246
BslFI	GGGAC	3 cut(s)	987, 1224, 1348
BslI	CCNNNNNNNGG	3 cut(s)	158, 1019, 1261
BsmAI	GTCTC	2 cut(s)	907, 1153
BsmBI	CGTCTC	1 cut(s)	907
BsmFI	GGGAC	3 cut(s)	987, 1224, 1348
BsnI	GGCC	2 cut(s)	37, 831
Bsp1286I	GDGCHC	4 cut(s)	340, 355, 826, 1123
Bsp143I	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
Bsp1720I	GCTNAGC	1 cut(s)	1176
BspACI	CCGC	1 cut(s)	1262
BspANI	GGCC	2 cut(s)	37, 831
BspCNI	CTCAG	4 cut(s)	367, 622, 711, 937
BspLI	GGNNCC	2 cut(s)	164, 1321
BspPI	GGATC	4 cut(s)	157, 170, 179, 339
BsrFI	RCCGGY	3 cut(s)	176, 714, 1245
BsrI	ACTGG	4 cut(s)	622, 889, 1013, 1342
BssAI	RCCGGY	3 cut(s)	176, 714, 1245
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
BssSI	CACGAG	1 cut(s)	825
BssT1I	CCWWGG	1 cut(s)	784
Bst2BI	CACGAG	1 cut(s)	825
Bst4CI	ACNGT	6 cut(s)	112, 232, 754, 978, 998, 1300
Bst6I	CTCTTC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstC8I	GCNNGC	3 cut(s)	747, 1402, 1406
BstDEI	CTNAG	7 cut(s)	286, 354, 630, 675, 698, 924, 1176
BstF5I	GGATG	4 cut(s)	204, 462, 1072, 1251
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	3 cut(s)	644, 697, 1294
BstKTI	GATC	8 cut(s)	105, 165, 187, 334, 462, 762, 852, 1038
BstMAI	GTCTC	2 cut(s)	907, 1153
BstMBI	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
BstMWI	GCNNNNNNNGC	3 cut(s)	650, 1055, 1064
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	2 cut(s)	1151, 1207
BstSFI	CTRYAG	1 cut(s)	934
BstSLI	GKGCMC	1 cut(s)	1123
BstV1I	GCAGC	4 cut(s)	679, 1079, 1192, 1252
BstV2I	GAAGAC	2 cut(s)	1093, 1149
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	37, 831
BtsCI	GGATG	4 cut(s)	204, 462, 1072, 1251
BtsI	GCAGTG	1 cut(s)	1110
BtsIMutI	CAGTG	8 cut(s)	108, 615, 759, 952, 983, 1003, 1110, 1296
Cac8I	GCNNGC	3 cut(s)	747, 1402, 1406
CaiI	CAGNNNCTG	1 cut(s)	1265
CfoI	GCGC	3 cut(s)	644, 697, 1294
Cfr10I	RCCGGY	3 cut(s)	176, 714, 1245
Cfr13I	GGNCC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	994, 1249
CspAI	ACCGGT	2 cut(s)	176, 1245
CviAII	CATG	5 cut(s)	874, 1082, 1105, 1137, 1315
CviQI	GTAC	2 cut(s)	994, 1249
DdeI	CTNAG	7 cut(s)	286, 354, 630, 675, 698, 924, 1176
DpnI	GATC	8 cut(s)	104, 164, 186, 333, 461, 761, 851, 1037
DpnII	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
EaeI	YGGCCR	1 cut(s)	829
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	784
ErhI	CCWWGG	1 cut(s)	784
Esp3I	CGTCTC	1 cut(s)	907
FaeI	CATG	5 cut(s)	877, 1085, 1108, 1140, 1318
FaqI	GGGAC	3 cut(s)	987, 1224, 1348
FatI	CATG	5 cut(s)	873, 1081, 1104, 1136, 1314
FauNDI	CATATG	2 cut(s)	400, 663
FbaI	TGATCA	2 cut(s)	459, 1035
Fnu4HI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
FokI	GGATG	4 cut(s)	211, 449, 1059, 1238
Fsp4HI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
FspBI	CTAG	1 cut(s)	1164
GlaI	GCGC	3 cut(s)	643, 696, 1293
GluI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
GsuI	CTGGAG	2 cut(s)	452, 872
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	37, 831
HapII	CCGG	6 cut(s)	177, 715, 1046, 1152, 1208, 1246
HhaI	GCGC	3 cut(s)	644, 697, 1294
Hin1II	CATG	5 cut(s)	877, 1085, 1108, 1140, 1318
Hin6I	GCGC	3 cut(s)	642, 695, 1292
HinP1I	GCGC	3 cut(s)	642, 695, 1292
HincII	GTYRAC	2 cut(s)	313, 434
HindII	GTYRAC	2 cut(s)	313, 434
HindIII	AAGCTT	2 cut(s)	359, 705
HinfI	GANTC	9 cut(s)	82, 220, 370, 486, 543, 986, 1220, 1341, 1422
HpaII	CCGG	6 cut(s)	177, 715, 1046, 1152, 1208, 1246
HphI	GGTGA	4 cut(s)	43, 244, 398, 1213
Hpy166II	GTNNAC	4 cut(s)	313, 434, 964, 1001
Hpy188I	TCNGA	7 cut(s)	357, 375, 459, 519, 701, 991, 1427
Hpy188III	TCNNGA	9 cut(s)	56, 267, 326, 343, 411, 503, 540, 586, 766
Hpy8I	GTNNAC	4 cut(s)	313, 434, 964, 1001
HpyAV	CCTTC	4 cut(s)	514, 632, 734, 1384
HpyCH4III	ACNGT	6 cut(s)	112, 232, 754, 978, 998, 1300
HpyCH4V	TGCA	9 cut(s)	25, 64, 280, 398, 749, 1028, 1268, 1284, 1352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	650, 1055, 1064
HpyF3I	CTNAG	7 cut(s)	286, 354, 630, 675, 698, 924, 1176
Hsp92II	CATG	5 cut(s)	877, 1085, 1108, 1140, 1318
HspAI	GCGC	3 cut(s)	642, 695, 1292
Ksp22I	TGATCA	2 cut(s)	459, 1035
Kzo9I	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
LmnI	GCTCC	5 cut(s)	238, 626, 1048, 1237, 1319
Lsp1109I	GCAGC	4 cut(s)	679, 1079, 1192, 1252
LweI	GCATC	5 cut(s)	189, 224, 267, 1194, 1293
MaeI	CTAG	1 cut(s)	1164
MaeIII	GTNAC	3 cut(s)	259, 733, 1354
MalI	GATC	8 cut(s)	104, 164, 186, 333, 461, 761, 851, 1037
MboI	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
MboII	GAAGA	7 cut(s)	44, 91, 115, 506, 754, 1093, 1149
MflI	RGATCY	1 cut(s)	162
MhlI	GDGCHC	4 cut(s)	340, 355, 826, 1123
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	2 cut(s)	941, 952
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	1 cut(s)	1229
MmeI	TCCRAC	3 cut(s)	424, 894, 1248
Mox20I	TGGCCA	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	831
Msp20I	TGGCCA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	1262
MspI	CCGG	6 cut(s)	177, 715, 1046, 1152, 1208, 1246
MspR9I	CCNGG	2 cut(s)	1153, 1209
MwoI	GCNNNNNNNGC	3 cut(s)	650, 1055, 1064
NciI	CCSGG	2 cut(s)	1153, 1209
NdeI	CATATG	2 cut(s)	400, 663
NdeII	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
NlaIII	CATG	5 cut(s)	877, 1085, 1108, 1140, 1318
NlaIV	GGNNCC	2 cut(s)	164, 1321
NmuCI	GTSAC	2 cut(s)	259, 1354
NspI	RCATGY	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PfeI	GAWTC	8 cut(s)	82, 220, 370, 486, 543, 986, 1341, 1422
PflMI	CCANNNNNTGG	1 cut(s)	1019
PinAI	ACCGGT	2 cut(s)	176, 1245
PkrI	GCNGC	5 cut(s)	694, 1069, 1182, 1264, 1267
PleI	GAGTC	1 cut(s)	1228
PpsI	GAGTC	1 cut(s)	1228
PspN4I	GGNNCC	2 cut(s)	164, 1321
PspPI	GGNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	1265
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	2 cut(s)	995, 1250
RsaNI	GTAC	2 cut(s)	994, 1249
SatI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
Sau3AI	GATC	8 cut(s)	102, 162, 184, 331, 459, 759, 849, 1035
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	1229
ScrFI	CCNGG	2 cut(s)	1153, 1209
SduI	GDGCHC	4 cut(s)	340, 355, 826, 1123
SfaNI	GCATC	5 cut(s)	189, 224, 267, 1194, 1293
SfcI	CTRYAG	1 cut(s)	934
SgrAI	CRCCGGYG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	2 cut(s)	941, 952
SsiI	CCGC	1 cut(s)	1262
SspMI	CTAG	1 cut(s)	1164
StyD4I	CCNGG	2 cut(s)	1151, 1207
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	6 cut(s)	112, 232, 754, 978, 998, 1300
TaqI	TCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	941, 952
TatI	WGTACW	1 cut(s)	993
TauI	GCSGC	1 cut(s)	1265
TfiI	GAWTC	8 cut(s)	82, 220, 370, 486, 543, 986, 1341, 1422
TscAI	CASTG	8 cut(s)	115, 622, 759, 952, 983, 1003, 1117, 1303
TseFI	GTSAC	2 cut(s)	259, 1354
TseI	GCWGC	4 cut(s)	692, 1067, 1180, 1265
Tsp45I	GTSAC	2 cut(s)	259, 1354
TspDTI	ATGAA	6 cut(s)	115, 544, 831, 907, 1093, 1303
TspGWI	ACGGA	2 cut(s)	177, 782
TspRI	CASTG	8 cut(s)	115, 622, 759, 952, 983, 1003, 1117, 1303
Van91I	CCANNNNNTGG	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	422
XapI	RAATTY	2 cut(s)	941, 952
XceI	RCATGY	1 cut(s)	877
XspI	CTAG	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.