Rmu_ssc0000336.1_g000001

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000336.1
Physical Location & Seq
Forward (+)
1 .. 3180
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000336.1_g000001.1.cds

Sequence Viewer

Length: 1439 bp
atccaaaatccgactctgcagctctctcagatcgaacggaaaacccatttctagggtttcgtaaggggagctccctcaatcccaatccgcaaggtgtgattagcgtggacggaggagcaatatgggaggtggatttagggttcttcatttatcagctccctctgtatggcattcactccaccacgggagcagatcccttctattggatgcgtgttattctcgcttccaatcgggggactgtcatggagcttgggatcaccccaattgtcacatctgggctggtgatgcagctccttgccgggtcaaagattattgaagttgacaacaatgtgcgcgaggatcgtgccctcctaaatggtgcacaaaagttattgggtatcctgatagctattggtgaggcagttgcctatgttctatctggcatgtatggtagtgttggccaactcggagttggaaatgccatccttatcatcatccagctctgctttgctggcattattgtgatatgtttggatgaactccttcagaagggatatggtctcggctctggaatttctcttttcattgctaccaatatctgtgaaaacattatctggaaggctttcagccccaccaccatcaacagtggccgaggagctgagtttgaaggagctgttattgctctattccatctgttgattactcgaacagataaagttcgagcacttcgggaggccttttaccggcagaatcttccaaacgtgaccaatctgcttgccacagtcttgatcttccttatagtcatttacttccaagggttccgtgtggttctgcctgtcagatcaaagaatgcccgtggacagcagggttcttatcctatcaagctattctacacatccaacatgcccatcattttgcagtctgcacttgtctccaacctttacttcatctcccagttgctatacaggaggtacagtggaaatttccttgtgaatcttttgggcaaatggaaggaatctgagtactcaggcggacaattcgttcctgttggtggtctagcatactatatcactgcaccttcaagcttagctgatatggcggccaaccctttccacgcactcttctatctcgtctttatgttgtcagcatgtgctcttttctcaaagacatggattgaagtatctggatcctctgccaaggatgttgccaagcagctcaaggaacaacaaatggtgatgcctggtcaccgtgagtcaaacttgcagaaggagctgaaccgctacattcccacagctgcagctttcggaggcatgtgcattggtgcattgaccgtgttggcagatttcatgggtgcaattggttctggaacaggaatcctgcttgcagtgaccatcatctatcagtactttgagaccttcgagaaagagagagccagtgagctcggtttctttggtttctaa

Protein Analysis

478

Amino Acids

52.13

Weight (kDa)

8.52

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010749)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 335
AciI CCGC 4 cut(s) 88, 1010, 1078, 1257
AclWI GGATC 5 cut(s) 187, 262, 347, 1160, 1173
AcoI YGGCCR 3 cut(s) 438, 627, 1079
AcsI RAATTY 2 cut(s) 551, 960
AcuI CTGAAG 1 cut(s) 508
AfaI GTAC 3 cut(s) 952, 1003, 1384
AfiI CCNNNNNNNGG 7 cut(s) 52, 166, 203, 233, 528, 722, 1030
AgsI TTSAA 4 cut(s) 316, 646, 1061, 1156
AjnI CCWGG 1 cut(s) 1218
AjuI GAANNNNNNNTTGG 2 cut(s) 907, 939
AloI GAACNNNNNNTCC 4 cut(s) 124, 156, 1004, 1036
Alw21I GWGCWC 5 cut(s) 73, 363, 705, 1134, 1421
Alw26I GTCTC 3 cut(s) 544, 915, 1384
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 5 cut(s) 187, 262, 347, 1160, 1173
AoxI GGCC 4 cut(s) 438, 627, 713, 1079
ApaLI GTGCAC 1 cut(s) 359
ApeKI GCWGC 5 cut(s) 19, 288, 1191, 1273, 1276
ApoI RAATTY 2 cut(s) 551, 960
Asp700I GAANNNNTTC 2 cut(s) 521, 601
AspLEI GCGC 1 cut(s) 335
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 5 cut(s) 249, 294, 406, 1216, 1224
BaeGI GKGCMC 2 cut(s) 348, 363
BalI TGGCCA 1 cut(s) 440
BamHI GGATCC 1 cut(s) 1165
BanII GRGCYC 2 cut(s) 73, 1421
Bbv12I GWGCWC 5 cut(s) 73, 363, 705, 1134, 1421
BbvI GCAGC 5 cut(s) 31, 300, 1203, 1260, 1288
BccI CCATC 5 cut(s) 469, 625, 677, 895, 1378
BcgI CGANNNNNNTGC 2 cut(s) 325, 359
BciT130I CCWGG 1 cut(s) 1220
BciVI GTATCC 1 cut(s) 388
BcnI CCSGG 1 cut(s) 300
BcoDI GTCTC 3 cut(s) 544, 915, 1384
BfaI CTAG 2 cut(s) 52, 1036
BfmI CTRYAG 2 cut(s) 17, 1274
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 6 cut(s) 20, 289, 1079, 1192, 1274, 1277
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 6 cut(s) 21, 290, 1080, 1193, 1275, 1278
BmcAI AGTACT 2 cut(s) 1003, 1384
Bme1390I CCNGG 2 cut(s) 300, 1220
BmiI GGNNCC 2 cut(s) 799, 1167
BmrFI CCNGG 2 cut(s) 300, 1220
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 3 cut(s) 197, 275, 1205
BmuI ACTGGG 1 cut(s) 927
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 1 cut(s) 1180
BpuMI CCSGG 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 544, 1384
BsaJI CCNNGG 5 cut(s) 182, 630, 792, 834, 1175
BsaXI ACNNNNNCTCC 4 cut(s) 913, 939, 943, 969
Bsc4I CCNNNNNNNGG 7 cut(s) 52, 166, 203, 233, 528, 722, 1030
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 2 cut(s) 933, 1412
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 1220
BseDI CCNNGG 5 cut(s) 182, 630, 792, 834, 1175
BseGI GGATG 6 cut(s) 212, 461, 473, 519, 874, 1185
BseLI CCNNNNNNNGG 7 cut(s) 52, 166, 203, 233, 528, 722, 1030
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 4 cut(s) 41, 629, 989, 1019
BseNI ACTGG 2 cut(s) 933, 1412
BseRI GAGGAG 2 cut(s) 128, 647
BseSI GKGCMC 2 cut(s) 348, 363
BseXI GCAGC 5 cut(s) 31, 300, 1203, 1260, 1288
BsgI GTGCAG 2 cut(s) 887, 1037
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 4 cut(s) 440, 629, 715, 1081
BsiHKAI GWGCWC 5 cut(s) 73, 363, 705, 1134, 1421
BsiSI CCGG 2 cut(s) 299, 723
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 7 cut(s) 52, 166, 203, 233, 528, 722, 1030
BsmAI GTCTC 3 cut(s) 544, 915, 1384
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 2 cut(s) 170, 834
BsnI GGCC 4 cut(s) 440, 629, 715, 1081
Bso31I GGTCTC 2 cut(s) 544, 1384
Bsp1286I GDGCHC 6 cut(s) 73, 348, 363, 705, 1134, 1421
Bsp143I GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
Bsp1720I GCTNAGC 1 cut(s) 1065
BspACI CCGC 4 cut(s) 88, 1010, 1078, 1257
BspANI GGCC 4 cut(s) 440, 629, 715, 1081
BspCNI CTCAG 4 cut(s) 40, 630, 990, 1018
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 799, 1167
BspMAI CTGCAG 2 cut(s) 21, 1278
BspPI GGATC 5 cut(s) 187, 262, 347, 1160, 1173
BspTNI GGTCTC 2 cut(s) 544, 1384
BsrDI GCAATG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 2 cut(s) 933, 1412
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 5 cut(s) 182, 630, 792, 834, 1175
BssMI GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
BssT1I CCWWGG 2 cut(s) 792, 1175
Bst2UI CCWGG 1 cut(s) 1220
Bst4CI ACNGT 6 cut(s) 240, 625, 762, 955, 1228, 1311
Bst6I CTCTTC 1 cut(s) 1105
BstC8I GCNNGC 3 cut(s) 492, 755, 1361
BstDEI CTNAG 5 cut(s) 27, 638, 998, 1005, 1065
BstDSI CCRYGG 2 cut(s) 182, 834
BstEII GGTNACC 1 cut(s) 1222
BstENI CCTNNNNNAGG 1 cut(s) 526
BstF5I GGATG 6 cut(s) 212, 461, 473, 519, 874, 1185
BstFNI CGCG 1 cut(s) 335
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 7 cut(s) 33, 195, 257, 342, 770, 823, 1168
BstMAI GTCTC 3 cut(s) 544, 915, 1384
BstMBI GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
BstMWI GCNNNNNNNGC 5 cut(s) 285, 491, 658, 1075, 1248
BstNI CCWGG 1 cut(s) 1220
BstNSI RCATGY 4 cut(s) 426, 885, 1130, 1293
BstPI GGTNACC 1 cut(s) 1222
BstSCI CCNGG 2 cut(s) 298, 1218
BstSFI CTRYAG 2 cut(s) 17, 1274
BstSLI GKGCMC 2 cut(s) 348, 363
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 5 cut(s) 31, 300, 1203, 1260, 1288
BstX2I RGATCY 2 cut(s) 192, 1165
BstYI RGATCY 2 cut(s) 192, 1165
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 440, 629, 715, 1081
BtgI CCRYGG 2 cut(s) 182, 834
BtsCI GGATG 6 cut(s) 212, 461, 473, 519, 874, 1185
BtsI GCAGTG 2 cut(s) 1049, 1370
BtsIMutI CAGTG 5 cut(s) 630, 960, 1049, 1370, 1419
Cac8I GCNNGC 3 cut(s) 492, 755, 1361
CfoI GCGC 1 cut(s) 335
Cfr10I RCCGGY 1 cut(s) 722
Csp6I GTAC 3 cut(s) 951, 1002, 1383
CviAII CATG 7 cut(s) 243, 423, 882, 1127, 1148, 1290, 1326
CviQI GTAC 3 cut(s) 951, 1002, 1383
DdeI CTNAG 5 cut(s) 27, 638, 998, 1005, 1065
DpnI GATC 7 cut(s) 32, 194, 256, 341, 769, 822, 1167
DpnII GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
EaeI YGGCCR 3 cut(s) 438, 627, 1079
Eam1104I CTCTTC 1 cut(s) 1105
EarI CTCTTC 1 cut(s) 1105
EciI GGCGGA 1 cut(s) 1025
Ecl136II GAGCTC 2 cut(s) 71, 1419
Eco130I CCWWGG 2 cut(s) 792, 1175
Eco147I AGGCCT 1 cut(s) 715
Eco24I GRGCYC 2 cut(s) 73, 1421
Eco31I GGTCTC 2 cut(s) 544, 1384
Eco53kI GAGCTC 2 cut(s) 71, 1419
Eco57I CTGAAG 1 cut(s) 508
Eco91I GGTNACC 1 cut(s) 1222
EcoICRI GAGCTC 2 cut(s) 71, 1419
EcoNI CCTNNNNNAGG 1 cut(s) 526
EcoO65I GGTNACC 1 cut(s) 1222
EcoRII CCWGG 1 cut(s) 1218
EcoT14I CCWWGG 2 cut(s) 792, 1175
EcoT38I GRGCYC 2 cut(s) 73, 1421
ErhI CCWWGG 2 cut(s) 792, 1175
FaeI CATG 7 cut(s) 246, 426, 885, 1130, 1151, 1293, 1329
FaqI GGGAC 1 cut(s) 249
FatI CATG 7 cut(s) 242, 422, 881, 1126, 1147, 1289, 1325
Fnu4HI GCNGC 6 cut(s) 20, 289, 1079, 1192, 1274, 1277
FokI GGATG 6 cut(s) 219, 448, 460, 526, 861, 1192
FriOI GRGCYC 2 cut(s) 73, 1421
Fsp4HI GCNGC 6 cut(s) 20, 289, 1079, 1192, 1274, 1277
FspBI CTAG 2 cut(s) 52, 1036
GlaI GCGC 1 cut(s) 334
GluI GCNGC 6 cut(s) 20, 289, 1079, 1192, 1274, 1277
HaeIII GGCC 4 cut(s) 440, 629, 715, 1081
HapII CCGG 2 cut(s) 299, 723
HhaI GCGC 1 cut(s) 335
Hin1II CATG 7 cut(s) 246, 426, 885, 1130, 1151, 1293, 1329
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 6 cut(s) 13, 729, 972, 994, 1231, 1352
HpaII CCGG 2 cut(s) 299, 723
HphI GGTGA 5 cut(s) 249, 294, 406, 1216, 1224
Hpy166II GTNNAC 4 cut(s) 108, 321, 361, 838
Hpy188I TCNGA 7 cut(s) 12, 30, 448, 527, 820, 999, 1285
Hpy188III TCNNGA 8 cut(s) 381, 548, 594, 709, 765, 1163, 1343, 1398
Hpy8I GTNNAC 4 cut(s) 108, 321, 361, 838
HpyAV CCTTC 9 cut(s) 207, 522, 532, 591, 640, 984, 1067, 1239, 1404
HpyCH4III ACNGT 6 cut(s) 240, 625, 762, 955, 1228, 1311
HpyCH4IV ACGT 1 cut(s) 740
HpyF10VI GCNNNNNNNGC 5 cut(s) 285, 491, 658, 1075, 1248
HpyF3I CTNAG 5 cut(s) 27, 638, 998, 1005, 1065
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 7 cut(s) 246, 426, 885, 1130, 1151, 1293, 1329
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
Lsp1109I GCAGC 5 cut(s) 31, 300, 1203, 1260, 1288
LweI GCATC 3 cut(s) 197, 275, 1205
MaeI CTAG 2 cut(s) 52, 1036
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 4 cut(s) 267, 741, 1222, 1365
MalI GATC 7 cut(s) 32, 194, 256, 341, 769, 822, 1167
MboI GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
MboII GAAGA 4 cut(s) 135, 724, 762, 1092
MfeI CAATTG 2 cut(s) 263, 1334
MflI RGATCY 2 cut(s) 192, 1165
MhlI GDGCHC 6 cut(s) 73, 348, 363, 705, 1134, 1421
MlsI TGGCCA 1 cut(s) 440
MluCI AATT 5 cut(s) 263, 551, 960, 1015, 1334
MluNI TGGCCA 1 cut(s) 440
MlyI GAGTC 2 cut(s) 7, 1240
MmeI TCCRAC 4 cut(s) 35, 432, 902, 938
Mox20I TGGCCA 1 cut(s) 440
MroXI GAANNNNTTC 2 cut(s) 521, 601
MscI TGGCCA 1 cut(s) 440
MslI CAYNNNNRTG 1 cut(s) 499
Msp20I TGGCCA 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 1273
MspI CCGG 2 cut(s) 299, 723
MspR9I CCNGG 2 cut(s) 300, 1220
MunI CAATTG 2 cut(s) 263, 1334
Mva1269I GAATGC 2 cut(s) 170, 834
MvaI CCWGG 1 cut(s) 1220
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 5 cut(s) 285, 491, 658, 1075, 1248
NciI CCSGG 1 cut(s) 300
NdeII GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
NlaIII CATG 7 cut(s) 246, 426, 885, 1130, 1151, 1293, 1329
NlaIV GGNNCC 2 cut(s) 799, 1167
NmeAIII GCCGAG 2 cut(s) 521, 655
NmuCI GTSAC 4 cut(s) 267, 741, 1222, 1365
NspI RCATGY 4 cut(s) 426, 885, 1130, 1293
PceI AGGCCT 1 cut(s) 715
PctI GAATGC 2 cut(s) 170, 834
PdmI GAANNNNTTC 2 cut(s) 521, 601
PfeI GAWTC 4 cut(s) 729, 972, 994, 1352
PkrI GCNGC 6 cut(s) 21, 290, 1080, 1193, 1275, 1278
PleI GAGTC 2 cut(s) 7, 1239
PpsI GAGTC 2 cut(s) 7, 1239
Psp124BI GAGCTC 2 cut(s) 73, 1421
Psp6I CCWGG 1 cut(s) 1218
PspEI GGTNACC 1 cut(s) 1222
PspGI CCWGG 1 cut(s) 1218
PspN4I GGNNCC 2 cut(s) 799, 1167
PstI CTGCAG 2 cut(s) 21, 1278
PsuI RGATCY 2 cut(s) 192, 1165
PvuII CAGCTG 1 cut(s) 1273
RsaI GTAC 3 cut(s) 952, 1003, 1384
RsaNI GTAC 3 cut(s) 951, 1002, 1383
RseI CAYNNNNRTG 1 cut(s) 499
SacI GAGCTC 2 cut(s) 73, 1421
SatI GCNGC 6 cut(s) 20, 289, 1079, 1192, 1274, 1277
Sau3AI GATC 7 cut(s) 30, 192, 254, 339, 767, 820, 1165
ScaI AGTACT 2 cut(s) 1003, 1384
SchI GAGTC 2 cut(s) 7, 1240
ScrFI CCNGG 2 cut(s) 300, 1220
SduI GDGCHC 6 cut(s) 73, 348, 363, 705, 1134, 1421
SfaNI GCATC 3 cut(s) 197, 275, 1205
SfcI CTRYAG 2 cut(s) 17, 1274
SmiMI CAYNNNNRTG 1 cut(s) 499
SmlI CTYRAG 1 cut(s) 1195
SmoI CTYRAG 1 cut(s) 1195
Sse9I AATT 5 cut(s) 263, 551, 960, 1015, 1334
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 4 cut(s) 88, 1010, 1078, 1257
SspMI CTAG 2 cut(s) 52, 1036
SstI GAGCTC 2 cut(s) 73, 1421
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 2 cut(s) 298, 1218
StyI CCWWGG 2 cut(s) 792, 1175
TaaI ACNGT 6 cut(s) 240, 625, 762, 955, 1228, 1311
TaiI ACGT 1 cut(s) 743
TaqI TCGA 4 cut(s) 33, 684, 699, 1397
TasI AATT 5 cut(s) 263, 551, 960, 1015, 1334
TatI WGTACW 2 cut(s) 1001, 1382
TauI GCSGC 1 cut(s) 1081
TfiI GAWTC 4 cut(s) 729, 972, 994, 1352
TscAI CASTG 5 cut(s) 630, 960, 1056, 1370, 1419
TseFI GTSAC 4 cut(s) 267, 741, 1222, 1365
TseI GCWGC 5 cut(s) 19, 288, 1191, 1273, 1276
Tsp45I GTSAC 4 cut(s) 267, 741, 1222, 1365
TspDTI ATGAA 5 cut(s) 135, 530, 552, 915, 1314
TspGWI ACGGA 3 cut(s) 52, 125, 790
TspRI CASTG 5 cut(s) 630, 960, 1056, 1370, 1419
VneI GTGCAC 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 526
XapI RAATTY 2 cut(s) 551, 960
XceI RCATGY 4 cut(s) 426, 885, 1130, 1293
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 2 cut(s) 521, 601
XspI CTAG 2 cut(s) 52, 1036
ZrmI AGTACT 2 cut(s) 1003, 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.