Prupe.8G009900_v2.0.a1

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
779709 .. 782964
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G009900.1

Sequence Viewer

Length: 1431 bp
ATGGGAGGTGGATTTCGAGTTCTTCATCTGGTGAGACCCTTCCTTTCGTTTTTGCCGGAAGTGCAGAGCGCTGACAGGAAAGTCCCCTTCAGAGAGAAGGTGATATACACCGTCATCTCCCTCTTCATTTTCTTGGTATGCAGCCAGCTCCCTCTGTATGGCATTCACTCCACAACTGGCGCAGATCCCTTCTATTGGATGCGTGTGATTCTCGCTTCCAACCGAGGCACTGTCATGGAGCTTGGGATCACTCCAATTGTCACATCTGGGCTCGTCATGCAACTCCTTGCTGGCTCTAAAATTATTGAAGTCGACAACAATGTACGCGAAGATCGTGCTCTTTTGAATGGAGCACAGAAGTTATTGGGCATTCTGATAGCTATTGGTGAGGCAGTTGCGTATGTTCTCTCGGGCATGTATGGTAGTGTTGGGCAACTTGGAGTTGGAAATGCCATTCTCATTATCATTCAGCTCTGCTTTGCCGGTATTATTGTGATATGTTTGGATGAACTGCTTCAGAAGGGATATGGTCTAGGCTCTGGAATTTCTCTTTTCATTGCCACCAATATCTGTGAAAACATTATCTGGAAGGCGTTTAGTCCCACCACTATCAACAGTGGGCGGGGAGCTGAATTTGAAGGTGCCGTTATTGCCCTGTTCCATCTTCTGATAACTCGAACAGATAAGGTTCGAGCTCTTCGAGAGGCCTTTTACCGGCAGAATCTTCCAAATGTTACAAATCTGCTTGCGACAGTGTTGATCTTCCTTATAGTAATCTACTTCCAAGGGTTCCGTGTGGTTCTGCCTGTGAGATCAAAGAATGCTCGTGGGCAGCAGGGTTCCTATCCTATCAAGCTGTTCTACACCTCCAACATGCCAATCATTCTGCAGTCTGCACTTGTGTCCAACCTCTACTTCATCTCCCAGTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTGAATCTTTTGGGTAAGTGGAAGGAGTCTGAATATTCGGGTGGACAATTCATTCCTGTCGGTGGCCTTGCATATTATATCACTGCCCCTTCAAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCACTCTTCTATCTTGTGTTCATGCTGTCAGCCTGTGCACTTTTCTCAAAAACATGGATTGAAGTTTCTGGATCCTCTGCCAAAGATGTTGCCAAGCAGCTCAAGGAACAACAAATGGTGATGCCTGGTCATCGTGAATCAAACTTGCAAAAAGAGCTGAACCGATACATTCCCACAGCTGCCGCCTTTGGAGGCATGTGCATTGGTGCTCTGACAGTGTTGGCCGATTTCATGGGTGCAATTGGTTCAGGAACAGGAATTCTGCTTGCAGTCACAATCATCTATCAGTACTTCGAGACATTTGAGAAAGAGAGAGCCAGTGAGCTTGGTTTCTTTGGTTTCTAG

Protein Analysis

477

Amino Acids

52.29

Weight (kDa)

9.06

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010749)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 641
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 327
AciI CCGC 2 cut(s) 622, 1269
AclWI GGATC 4 cut(s) 179, 254, 1152, 1165
AcoI YGGCCR 1 cut(s) 1308
AcsI RAATTY 4 cut(s) 543, 632, 952, 1344
AcuI CTGAAG 2 cut(s) 73, 500
AfaI GTAC 4 cut(s) 324, 935, 944, 1376
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 4 cut(s) 158, 195, 714, 1022
AgsI TTSAA 5 cut(s) 308, 346, 638, 1053, 1148
AjnI CCWGG 1 cut(s) 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AloI GAACNNNNNNTCC 1 cut(s) 35
Alw21I GWGCWC 5 cut(s) 340, 355, 697, 1126, 1297
Alw26I GTCTC 2 cut(s) 28, 1376
Alw44I GTGCAC 1 cut(s) 1122
AlwI GGATC 4 cut(s) 179, 254, 1152, 1165
AlwNI CAGNNNCTG 1 cut(s) 931
Ama87I CYCGRG 1 cut(s) 409
Aor51HI AGCGCT 1 cut(s) 70
AoxI GGCC 3 cut(s) 705, 1024, 1308
ApaLI GTGCAC 1 cut(s) 1122
ApeKI GCWGC 5 cut(s) 141, 832, 1070, 1183, 1265
ApoI RAATTY 4 cut(s) 543, 632, 952, 1344
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 71, 182
AsuHPI GGTGA 4 cut(s) 43, 112, 398, 1216
AvaI CYCGRG 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 1126
BamHI GGATCC 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 273, 697
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BauI CACGAG 1 cut(s) 825
Bbv12I GWGCWC 5 cut(s) 340, 355, 697, 1126, 1297
BbvI GCAGC 5 cut(s) 153, 844, 1082, 1195, 1252
BccI CCATC 1 cut(s) 669
BceAI ACGGC 1 cut(s) 629
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 1212
BcoDI GTCTC 2 cut(s) 28, 1376
BfaI CTAG 2 cut(s) 533, 1429
BfmI CTRYAG 1 cut(s) 887
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 6 cut(s) 142, 833, 1071, 1184, 1266, 1269
BlpI GCTNAGC 1 cut(s) 1057
BlsI GCNGC 6 cut(s) 143, 834, 1072, 1185, 1267, 1270
BmcAI AGTACT 1 cut(s) 1376
Bme1390I CCNGG 1 cut(s) 1212
BmeT110I CYCGRG 1 cut(s) 409
BmiI GGNNCC 4 cut(s) 643, 791, 841, 1159
BmrFI CCNGG 1 cut(s) 1212
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 2 cut(s) 189, 1197
BmuI ACTGGG 1 cut(s) 919
Bpu1102I GCTNAGC 1 cut(s) 1057
BpuEI CTTGAG 1 cut(s) 1172
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 223, 784
BsaXI ACNNNNNCTCC 4 cut(s) 905, 931, 935, 961
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 195, 714, 1022
Bse118I RCCGGY 2 cut(s) 482, 714
Bse1I ACTGG 3 cut(s) 181, 925, 1404
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 2 cut(s) 223, 784
BseGI GGATG 2 cut(s) 204, 511
BseLI CCNNNNNNNGG 4 cut(s) 158, 195, 714, 1022
BseMI GCAATG 1 cut(s) 555
BseNI ACTGG 3 cut(s) 181, 925, 1404
BseSI GKGCMC 1 cut(s) 1126
BseXI GCAGC 5 cut(s) 153, 844, 1082, 1195, 1252
BsgI GTGCAG 2 cut(s) 83, 879
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 707, 1026, 1310
BshNI GGYRCC 1 cut(s) 641
BsiHKAI GWGCWC 5 cut(s) 340, 355, 697, 1126, 1297
BsiHKCI CYCGRG 1 cut(s) 409
BsiSI CCGG 3 cut(s) 56, 483, 715
BslFI GGGAC 2 cut(s) 68, 585
BslI CCNNNNNNNGG 4 cut(s) 158, 195, 714, 1022
BsmAI GTCTC 2 cut(s) 28, 1376
BsmFI GGGAC 2 cut(s) 68, 585
BsmI GAATGC 3 cut(s) 162, 369, 826
BsnI GGCC 3 cut(s) 707, 1026, 1310
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 409
Bsp1286I GDGCHC 6 cut(s) 273, 340, 355, 697, 1126, 1297
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
Bsp1720I GCTNAGC 1 cut(s) 1057
BspACI CCGC 2 cut(s) 622, 1269
BspANI GGCC 3 cut(s) 707, 1026, 1310
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 4 cut(s) 643, 791, 841, 1159
BspMAI CTGCAG 1 cut(s) 891
BspPI GGATC 4 cut(s) 179, 254, 1152, 1165
BspQI GCTCTTC 1 cut(s) 702
BspT107I GGYRCC 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 482, 714
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 3 cut(s) 181, 925, 1404
BssAI RCCGGY 2 cut(s) 482, 714
BssECI CCNNGG 2 cut(s) 223, 784
BssMI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 784
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 6 cut(s) 112, 232, 617, 754, 947, 1303
Bst6I CTCTTC 3 cut(s) 128, 702, 1097
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 4 cut(s) 146, 292, 747, 1353
BstDEI CTNAG 1 cut(s) 1057
BstF5I GGATG 2 cut(s) 204, 511
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 2 cut(s) 71, 182
BstKTI GATC 6 cut(s) 187, 249, 334, 762, 815, 1160
BstMAI GTCTC 2 cut(s) 28, 1376
BstMBI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
BstMWI GCNNNNNNNGC 5 cut(s) 61, 277, 650, 1067, 1240
BstNI CCWGG 1 cut(s) 1212
BstNSI RCATGY 3 cut(s) 418, 877, 1285
BstSCI CCNGG 1 cut(s) 1210
BstSFI CTRYAG 1 cut(s) 887
BstSLI GKGCMC 1 cut(s) 1126
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 153, 844, 1082, 1195, 1252
BstX2I RGATCY 2 cut(s) 184, 1157
BstYI RGATCY 2 cut(s) 184, 1157
BsuRI GGCC 3 cut(s) 707, 1026, 1310
BtsCI GGATG 2 cut(s) 204, 511
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 7 cut(s) 228, 622, 759, 952, 1041, 1308, 1411
Cac8I GCNNGC 4 cut(s) 146, 292, 747, 1353
CaiI CAGNNNCTG 1 cut(s) 931
CfoI GCGC 2 cut(s) 71, 182
Cfr10I RCCGGY 2 cut(s) 482, 714
Csp6I GTAC 4 cut(s) 323, 934, 943, 1375
CviAII CATG 9 cut(s) 235, 277, 415, 874, 1085, 1108, 1140, 1282, 1318
CviQI GTAC 4 cut(s) 323, 934, 943, 1375
DdeI CTNAG 1 cut(s) 1057
DpnI GATC 6 cut(s) 186, 248, 333, 761, 814, 1159
DpnII GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 1308
Eam1104I CTCTTC 3 cut(s) 128, 702, 1097
EarI CTCTTC 3 cut(s) 128, 702, 1097
Ecl136II GAGCTC 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 784
Eco147I AGGCCT 1 cut(s) 707
Eco24I GRGCYC 2 cut(s) 273, 697
Eco31I GGTCTC 1 cut(s) 28
Eco47III AGCGCT 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 2 cut(s) 73, 500
Eco88I CYCGRG 1 cut(s) 409
EcoICRI GAGCTC 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 1344
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 2 cut(s) 273, 697
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 9 cut(s) 238, 280, 418, 877, 1088, 1111, 1143, 1285, 1321
FaqI GGGAC 2 cut(s) 68, 585
FatI CATG 9 cut(s) 234, 276, 414, 873, 1084, 1107, 1139, 1281, 1317
FauI CCCGC 1 cut(s) 615
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 6 cut(s) 142, 833, 1071, 1184, 1266, 1269
FokI GGATG 2 cut(s) 211, 518
FriOI GRGCYC 2 cut(s) 273, 697
Fsp4HI GCNGC 6 cut(s) 142, 833, 1071, 1184, 1266, 1269
FspBI CTAG 2 cut(s) 533, 1429
GlaI GCGC 2 cut(s) 70, 181
GluI GCNGC 6 cut(s) 142, 833, 1071, 1184, 1266, 1269
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 3 cut(s) 707, 1026, 1310
HapII CCGG 3 cut(s) 56, 483, 715
HhaI GCGC 2 cut(s) 71, 182
Hin1II CATG 9 cut(s) 238, 280, 418, 877, 1088, 1111, 1143, 1285, 1321
Hin6I GCGC 2 cut(s) 69, 180
HinP1I GCGC 2 cut(s) 69, 180
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 1054
HinfI GANTC 5 cut(s) 208, 721, 964, 986, 1223
HpaII CCGG 3 cut(s) 56, 483, 715
HphI GGTGA 4 cut(s) 43, 112, 398, 1216
Hpy166II GTNNAC 3 cut(s) 313, 1004, 1124
Hpy188I TCNGA 6 cut(s) 92, 375, 519, 669, 991, 1299
Hpy188III TCNNGA 7 cut(s) 540, 586, 701, 1155, 1220, 1335, 1381
Hpy8I GTNNAC 3 cut(s) 313, 1004, 1124
HpyAV CCTTC 9 cut(s) 49, 91, 97, 199, 514, 583, 632, 976, 1059
HpyCH4III ACNGT 6 cut(s) 112, 232, 617, 754, 947, 1303
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 277, 650, 1067, 1240
HpyF3I CTNAG 1 cut(s) 1057
Hsp92II CATG 9 cut(s) 238, 280, 418, 877, 1088, 1111, 1143, 1285, 1321
HspAI GCGC 2 cut(s) 69, 180
Kzo9I GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
LguI GCTCTTC 1 cut(s) 702
LmnI GCTCC 4 cut(s) 153, 238, 350, 626
Lsp1109I GCAGC 5 cut(s) 153, 844, 1082, 1195, 1252
LweI GCATC 2 cut(s) 189, 1197
MaeI CTAG 2 cut(s) 533, 1429
MaeIII GTNAC 3 cut(s) 259, 733, 1357
MalI GATC 6 cut(s) 186, 248, 333, 761, 814, 1159
MboI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
MboII GAAGA 8 cut(s) 14, 115, 341, 656, 689, 716, 754, 1084
MfeI CAATTG 2 cut(s) 255, 1326
MflI RGATCY 2 cut(s) 184, 1157
MhlI GDGCHC 6 cut(s) 273, 340, 355, 697, 1126, 1297
MluCI AATT 8 cut(s) 255, 300, 543, 632, 952, 1007, 1326, 1344
MlyI GAGTC 1 cut(s) 995
MmeI TCCRAC 4 cut(s) 243, 424, 894, 930
MroXI GAANNNNTTC 1 cut(s) 513
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 1265
MspI CCGG 3 cut(s) 56, 483, 715
MspR9I CCNGG 1 cut(s) 1212
MunI CAATTG 2 cut(s) 255, 1326
Mva1269I GAATGC 3 cut(s) 162, 369, 826
MvaI CCWGG 1 cut(s) 1212
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 5 cut(s) 61, 277, 650, 1067, 1240
NdeII GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
NlaIII CATG 9 cut(s) 238, 280, 418, 877, 1088, 1111, 1143, 1285, 1321
NlaIV GGNNCC 4 cut(s) 643, 791, 841, 1159
NmuCI GTSAC 2 cut(s) 259, 1357
NspI RCATGY 3 cut(s) 418, 877, 1285
PceI AGGCCT 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 702
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 697
PctI GAATGC 3 cut(s) 162, 369, 826
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 4 cut(s) 208, 721, 964, 1223
PkrI GCNGC 6 cut(s) 143, 834, 1072, 1185, 1267, 1270
PleI GAGTC 1 cut(s) 994
PpsI GAGTC 1 cut(s) 994
Psp124BI GAGCTC 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 4 cut(s) 643, 791, 841, 1159
PstI CTGCAG 1 cut(s) 891
PstNI CAGNNNCTG 1 cut(s) 931
PsuI RGATCY 2 cut(s) 184, 1157
PvuII CAGCTG 1 cut(s) 1265
RsaI GTAC 4 cut(s) 324, 935, 944, 1376
RsaNI GTAC 4 cut(s) 323, 934, 943, 1375
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 697
SalI GTCGAC 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 702
SatI GCNGC 6 cut(s) 142, 833, 1071, 1184, 1266, 1269
Sau3AI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
ScaI AGTACT 1 cut(s) 1376
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 1 cut(s) 1212
SduI GDGCHC 6 cut(s) 273, 340, 355, 697, 1126, 1297
SfaNI GCATC 2 cut(s) 189, 1197
SfcI CTRYAG 1 cut(s) 887
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 8 cut(s) 255, 300, 543, 632, 952, 1007, 1326, 1344
SseBI AGGCCT 1 cut(s) 707
SsiI CCGC 2 cut(s) 622, 1269
SspI AATATT 1 cut(s) 995
SspMI CTAG 2 cut(s) 533, 1429
SstI GAGCTC 1 cut(s) 697
StuI AGGCCT 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 1210
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 6 cut(s) 112, 232, 617, 754, 947, 1303
TaqI TCGA 6 cut(s) 16, 312, 676, 691, 700, 1380
TasI AATT 8 cut(s) 255, 300, 543, 632, 952, 1007, 1326, 1344
TatI WGTACW 2 cut(s) 933, 1374
TauI GCSGC 1 cut(s) 1271
TfiI GAWTC 4 cut(s) 208, 721, 964, 1223
TscAI CASTG 7 cut(s) 235, 622, 759, 952, 1048, 1308, 1411
TseFI GTSAC 2 cut(s) 259, 1357
TseI GCWGC 5 cut(s) 141, 832, 1070, 1183, 1265
Tsp45I GTSAC 2 cut(s) 259, 1357
TspDTI ATGAA 8 cut(s) 14, 115, 522, 544, 907, 1000, 1096, 1306
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 7 cut(s) 235, 622, 759, 952, 1048, 1308, 1411
VneI GTGCAC 1 cut(s) 1122
XapI RAATTY 4 cut(s) 543, 632, 952, 1344
XceI RCATGY 3 cut(s) 418, 877, 1285
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 533, 1429
ZrmI AGTACT 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.