Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010749

Physical Location & Seq

Genomic Coordinates Forward (+)

14462023 .. 14464879

Gene Structure 2857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGGAGGAGGATTTAGAGTTTTGCATTTGGTGAGGCCATTCTTGGCTTTTCTGCCTGAGGTTCAGAGTGCTGATAGGAAGGTTCCATTCAGAGAGAAGGTTATCTACACTGTCATCTCTCTCTTCATCTTTCTTGTCTGCAGTCAGCTTCCTCTTTATGGAATCCATTCCACCACCGGTGCGGATCCATTCTATTGGATGCGTGTCATTCTTGCGTCCAACCGTGGAACTGTCATGGAGCTCGGTATTACTCCTATTGTTACATCTGGACTTGTGATGCAACTCTTGGCTGGTTCCAAGATTATTGAGGTTGACAACAATGTTCGTGAGGATCGTGCCCTCTTGAATGGTGCTCAGAAGCTTCTAGGTATTCTGATTGCCATTGGTGAGGCTGTTGCATATGTTCTTTCTGGAATGTATGGTCCCGTTGGACAGCTTGGTGTTGGAAATGCCATTCTGATCATCCTTCAGCTTTTCTTTGCTGGAATCATTGTTATCTGCCTTGATGAACTCCTTCAGAAGGGATATGGTCTCGGATCAGGAATCTCCCTTTTCATTGCCACCAACATTTGTGAAAGCATTATCTGGAAGGCATTTAGCCCAACTACCATCAACACCGGGCGTGGAGCTGAGTTTGAAGGTGCTGTTATTGCACTGTTCCATATGCTGATAACCAAGTCCAACAAGGTTGCGGCTCTCCGCCAAGCTTTCTACCGGCAAAACCTTCCAAATGTTACCAACTTGCTTGCCACAGTCTTGATCTTCCTGATTGTGATCTACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTGAGATCAAAGAATGCCCGTGGACAACAGGGTTCTTACCCAATCAAGCTGTTCTACACCTCTAACATGCCCATCATCCTCCAATCCGCCCTCGTCTCAAATCTTTACTTCATTTCTCAGCTTCTCTACCGGAAGTTCAGCGGAAATTTCTTTGTAAACCTTTTGGGACAATGGAAAGAATCTGAGTACAGTGGACAATCTATTCCAGTTAGTGGTCTGGCTTACCTCATCACAGCTCCAGCAAGTTTCTCTGACATGGCAGCTCACCCGTTCCATGCACTGTTCTACATCGTCTTCATGCTCACTGCTTGTGCTCTTTTCTCAAAGACATGGATTGAAGTCTCTGGATCTTCTGCTAGGGATGTAGCTAAGCAGCTAAAGGAACAACAAATGGTGATGCCAGGACACAGAGAATCAAACTTACAGAAGGAACTGAACAGATACATCCCAACAGCAGCAGCTTTTGGAGGAGTTTGTATCGGTGCACTTACCGTTTTGGCTGATTTCATGGGAGCCATCGGGTCGGGAACCGGAATTCTGTTGGCGGTCACGATCATATACCAGTATTTCGAGACCTTTGAGAAGGAAAAAGCCAGTGAACTCGGCTTCTTCGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

475

Amino Acids

52.1

Weight (kDa)

9.12

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plug_translocon	PF10559	42 - 76	1.1e-17	Plug domain of Sec61p
SecY	PF00344	77 - 459	3.5e-80	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29310 AT1G29310 AT2G34250 AT2G34250 AT2G34250
fragaria_vesca	FvH4_3g18150
malus_domestica	MD11G1265500.v1.1
prunus_persica	Prupe.4G160300_v2.0.a1 Prupe.8G009900_v2.0.a1
pyrus_communis	pycom11g23350
rosa_chinensis	RchiOBHm_Chr5g0030581
rosa_laevigata	RLG00000033229
rosa_multiflora	Rmu_ssc0000336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049720
rosa_rugosa	Rorug05G0118500
rosa_samantha	Rh5AG210800 Rh5BG209900 Rh5CG233600 Rh5DG214400
rosa_wichuraiana	Rw5G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AciI	CCGC	6 cut(s)	182, 692, 700, 894, 948, 1352
AclWI	GGATC	5 cut(s)	179, 192, 339, 544, 1162
AcsI	RAATTY	2 cut(s)	952, 1341
AcuI	CTGAAG	2 cut(s)	452, 500
AfaI	GTAC	1 cut(s)	995
AfiI	CCNNNNNNNGG	3 cut(s)	158, 520, 1019
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	346, 638, 1145
AjnI	CCWGG	1 cut(s)	1207
Alw21I	GWGCWC	4 cut(s)	243, 355, 1123, 1294
Alw26I	GTCTC	4 cut(s)	536, 907, 1153, 1373
Alw44I	GTGCAC	1 cut(s)	1290
AlwI	GGATC	5 cut(s)	179, 192, 339, 544, 1162
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	1 cut(s)	1290
ApeKI	GCWGC	4 cut(s)	1067, 1180, 1262, 1265
ApoI	RAATTY	2 cut(s)	952, 1341
AsiGI	ACCGGT	1 cut(s)	176
Asp700I	GAANNNNTTC	2 cut(s)	166, 513
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	4 cut(s)	43, 398, 1064, 1213
AvaII	GGWCC	1 cut(s)	422
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	2 cut(s)	340, 1294
BamHI	GGATCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	243
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BbsI	GAAGAC	1 cut(s)	1093
Bbv12I	GWGCWC	4 cut(s)	243, 355, 1123, 1294
BbvI	GCAGC	4 cut(s)	1079, 1192, 1274, 1277
BccI	CCATC	3 cut(s)	617, 887, 1331
BciT130I	CCWGG	1 cut(s)	1209
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	4 cut(s)	536, 907, 1153, 1373
BfaI	CTAG	2 cut(s)	365, 1164
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
BlpI	GCTNAGC	1 cut(s)	1176
BlsI	GCNGC	5 cut(s)	694, 1069, 1182, 1264, 1267
Bme1390I	CCNGG	2 cut(s)	619, 1209
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	6 cut(s)	84, 186, 295, 424, 1321, 1336
BmrFI	CCNGG	2 cut(s)	619, 1209
BmsI	GCATC	3 cut(s)	189, 267, 1194
BpiI	GAAGAC	1 cut(s)	1093
BpmI	CTGGAG	1 cut(s)	1029
Bpu1102I	GCTNAGC	1 cut(s)	1176
BpuMI	CCSGG	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	773
BsaI	GGTCTC	2 cut(s)	536, 1373
BsaJI	CCNNGG	3 cut(s)	223, 784, 826
BsaWI	WCCGGW	3 cut(s)	176, 936, 1337
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 520, 1019
Bse118I	RCCGGY	2 cut(s)	176, 714
Bse1I	ACTGG	3 cut(s)	1013, 1369, 1401
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	773
BseBI	CCWGG	1 cut(s)	1209
BseDI	CCNNGG	3 cut(s)	223, 784, 826
BseGI	GGATG	5 cut(s)	204, 462, 882, 1174, 1251
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	3 cut(s)	158, 520, 1019
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	5 cut(s)	48, 368, 621, 938, 981
BseNI	ACTGG	3 cut(s)	1013, 1369, 1401
BseRI	GAGGAG	2 cut(s)	21, 1290
BseSI	GKGCMC	2 cut(s)	340, 1294
BseXI	GCAGC	4 cut(s)	1079, 1192, 1274, 1277
BshFI	GGCC	1 cut(s)	37
BshTI	ACCGGT	1 cut(s)	176
BsiHKAI	GWGCWC	4 cut(s)	243, 355, 1123, 1294
BsiSI	CCGG	5 cut(s)	177, 618, 715, 937, 1338
BslFI	GGGAC	2 cut(s)	408, 987
BslI	CCNNNNNNNGG	3 cut(s)	158, 520, 1019
BsmAI	GTCTC	4 cut(s)	536, 907, 1153, 1373
BsmBI	CGTCTC	1 cut(s)	907
BsmFI	GGGAC	2 cut(s)	408, 987
BsmI	GAATGC	1 cut(s)	826
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	2 cut(s)	536, 1373
Bsp1286I	GDGCHC	5 cut(s)	243, 340, 355, 1123, 1294
Bsp143I	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
Bsp1720I	GCTNAGC	1 cut(s)	1176
BspACI	CCGC	6 cut(s)	182, 692, 700, 894, 948, 1352
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	5 cut(s)	49, 367, 622, 937, 982
BspLI	GGNNCC	6 cut(s)	84, 186, 295, 424, 1321, 1336
BspMAI	CTGCAG	1 cut(s)	143
BspPI	GGATC	5 cut(s)	179, 192, 339, 544, 1162
BspTNI	GGTCTC	2 cut(s)	536, 1373
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	2 cut(s)	176, 714
BsrI	ACTGG	3 cut(s)	1013, 1369, 1401
BssAI	RCCGGY	2 cut(s)	176, 714
BssECI	CCNNGG	3 cut(s)	223, 784, 826
BssMI	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
BssT1I	CCWWGG	1 cut(s)	784
Bst2UI	CCWGG	1 cut(s)	1209
Bst4CI	ACNGT	8 cut(s)	112, 224, 232, 657, 754, 998, 1089, 1300
Bst6I	CTCTTC	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	6 cut(s)	57, 354, 630, 924, 990, 1176
BstDSI	CCRYGG	2 cut(s)	223, 826
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	5 cut(s)	204, 462, 882, 1174, 1251
BstKTI	GATC	9 cut(s)	187, 334, 462, 539, 762, 777, 815, 1157, 1362
BstMAI	GTCTC	4 cut(s)	536, 907, 1153, 1373
BstMBI	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstNI	CCWGG	1 cut(s)	1209
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	2 cut(s)	617, 1207
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	2 cut(s)	340, 1294
BstV1I	GCAGC	4 cut(s)	1079, 1192, 1274, 1277
BstV2I	GAAGAC	1 cut(s)	1093
BstX2I	RGATCY	2 cut(s)	184, 1154
BstXI	CCANNNNNNTGG	1 cut(s)	195
BstYI	RGATCY	2 cut(s)	184, 1154
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	2 cut(s)	223, 826
BtsCI	GGATG	5 cut(s)	204, 462, 882, 1174, 1251
BtsI	GCAGTG	1 cut(s)	1110
BtsIMutI	CAGTG	6 cut(s)	108, 653, 1003, 1085, 1110, 1408
Cac8I	GCNNGC	1 cut(s)	747
Cfr10I	RCCGGY	2 cut(s)	176, 714
Cfr13I	GGNCC	1 cut(s)	422
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	994
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	7 cut(s)	235, 874, 1063, 1082, 1105, 1137, 1315
CviQI	GTAC	1 cut(s)	994
DdeI	CTNAG	6 cut(s)	57, 354, 630, 924, 990, 1176
DpnI	GATC	9 cut(s)	186, 333, 461, 538, 761, 776, 814, 1156, 1361
DpnII	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	2 cut(s)	689, 883
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	784
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	536, 1373
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	452, 500
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	1341
EcoRII	CCWGG	1 cut(s)	1207
EcoT14I	CCWWGG	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	784
Esp3I	CGTCTC	1 cut(s)	907
FaeI	CATG	7 cut(s)	238, 877, 1066, 1085, 1108, 1140, 1318
FaqI	GGGAC	2 cut(s)	408, 987
FatI	CATG	7 cut(s)	234, 873, 1062, 1081, 1104, 1136, 1314
FauNDI	CATATG	2 cut(s)	400, 663
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
FokI	GGATG	5 cut(s)	211, 449, 869, 1181, 1238
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
FspBI	CTAG	2 cut(s)	365, 1164
GluI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	5 cut(s)	177, 618, 715, 937, 1338
HgaI	GACGC	1 cut(s)	204
Hin1II	CATG	7 cut(s)	238, 877, 1066, 1085, 1108, 1140, 1318
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	2 cut(s)	359, 705
HinfI	GANTC	5 cut(s)	162, 486, 543, 986, 1220
HpaII	CCGG	5 cut(s)	177, 618, 715, 937, 1338
HphI	GGTGA	4 cut(s)	43, 398, 1064, 1213
Hpy166II	GTNNAC	6 cut(s)	313, 830, 964, 1001, 1292, 1406
Hpy188I	TCNGA	9 cut(s)	66, 92, 357, 375, 459, 519, 536, 991, 1060
Hpy8I	GTNNAC	6 cut(s)	313, 830, 964, 1001, 1292, 1406
HpyCH4III	ACNGT	8 cut(s)	112, 224, 232, 657, 754, 998, 1089, 1300
HpyCH4V	TGCA	7 cut(s)	25, 141, 280, 398, 653, 1085, 1292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	6 cut(s)	57, 354, 630, 924, 990, 1176
Hsp92II	CATG	7 cut(s)	238, 877, 1066, 1085, 1108, 1140, 1318
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
LmnI	GCTCC	4 cut(s)	238, 626, 1048, 1319
Lsp1109I	GCAGC	4 cut(s)	1079, 1192, 1274, 1277
LweI	GCATC	3 cut(s)	189, 267, 1194
MaeI	CTAG	2 cut(s)	365, 1164
MaeIII	GTNAC	3 cut(s)	259, 733, 1354
MalI	GATC	9 cut(s)	186, 333, 461, 538, 761, 776, 814, 1156, 1361
MboI	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
MboII	GAAGA	5 cut(s)	115, 754, 1093, 1149, 1408
MflI	RGATCY	2 cut(s)	184, 1154
MhlI	GDGCHC	5 cut(s)	243, 340, 355, 1123, 1294
MluCI	AATT	2 cut(s)	952, 1341
MmeI	TCCRAC	4 cut(s)	243, 409, 424, 705
MroXI	GAANNNNTTC	2 cut(s)	166, 513
MspA1I	CMGCKG	1 cut(s)	948
MspI	CCGG	5 cut(s)	177, 618, 715, 937, 1338
MspR9I	CCNGG	2 cut(s)	619, 1209
Mva1269I	GAATGC	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	1209
MwoI	GCNNNNNNNGC	1 cut(s)	650
NciI	CCSGG	1 cut(s)	619
NdeI	CATATG	2 cut(s)	400, 663
NdeII	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
NlaIII	CATG	7 cut(s)	238, 877, 1066, 1085, 1108, 1140, 1318
NlaIV	GGNNCC	6 cut(s)	84, 186, 295, 424, 1321, 1336
NmeAIII	GCCGAG	1 cut(s)	1389
NmuCI	GTSAC	1 cut(s)	1354
NspI	RCATGY	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PctI	GAATGC	1 cut(s)	826
PdmI	GAANNNNTTC	2 cut(s)	166, 513
PfeI	GAWTC	5 cut(s)	162, 486, 543, 986, 1220
PflMI	CCANNNNNTGG	1 cut(s)	1019
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	694, 1069, 1182, 1264, 1267
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	1207
PspGI	CCWGG	1 cut(s)	1207
PspN4I	GGNNCC	6 cut(s)	84, 186, 295, 424, 1321, 1336
PspPI	GGNCC	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	184, 1154
RsaI	GTAC	1 cut(s)	995
RsaNI	GTAC	1 cut(s)	994
SacI	GAGCTC	1 cut(s)	243
SatI	GCNGC	5 cut(s)	693, 1068, 1181, 1263, 1266
Sau3AI	GATC	9 cut(s)	184, 331, 459, 536, 759, 774, 812, 1154, 1359
Sau96I	GGNCC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	619, 1209
SduI	GDGCHC	5 cut(s)	243, 340, 355, 1123, 1294
SfaNI	GCATC	3 cut(s)	189, 267, 1194
SfcI	CTRYAG	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	422
Sse9I	AATT	2 cut(s)	952, 1341
SsiI	CCGC	6 cut(s)	182, 692, 700, 894, 948, 1352
SspMI	CTAG	2 cut(s)	365, 1164
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	617, 1207
StyI	CCWWGG	1 cut(s)	784
TaaI	ACNGT	8 cut(s)	112, 224, 232, 657, 754, 998, 1089, 1300
TaqI	TCGA	1 cut(s)	1377
TasI	AATT	2 cut(s)	952, 1341
TatI	WGTACW	1 cut(s)	993
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	5 cut(s)	162, 486, 543, 986, 1220
TscAI	CASTG	6 cut(s)	115, 660, 1003, 1092, 1117, 1408
TseFI	GTSAC	1 cut(s)	1354
TseI	GCWGC	4 cut(s)	1067, 1180, 1262, 1265
Tsp45I	GTSAC	1 cut(s)	1354
TspDTI	ATGAA	6 cut(s)	115, 522, 544, 907, 1093, 1303
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	6 cut(s)	115, 660, 1003, 1092, 1117, 1408
Van91I	CCANNNNNTGG	1 cut(s)	1019
VneI	GTGCAC	1 cut(s)	1290
VpaK11BI	GGWCC	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	2 cut(s)	952, 1341
XceI	RCATGY	1 cut(s)	877
XmnI	GAANNNNTTC	2 cut(s)	166, 513
XspI	CTAG	2 cut(s)	365, 1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.