Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010749

Physical Location & Seq

Genomic Coordinates Forward (+)

24266168 .. 24269623

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGAGGTGGATTTAGGGTTCTTCATTTAGTGAGGCCCTTCCTTTCGTTTTTGCCGGAAGTCCAGAGCGCCGATAGGAAAGTCCCGTTCAGAGAGAAGGTCATCTACACTGTCATCTCGCTCTTCATTTTCTTGGTGTGCAGTCAGCTCCCTCTGTATGGCATTCACTCCACCACCGGAGCAGATCCCTTCTATTGGATGCGTGTTATCCTCGCTTCCAATCGGGGGACTGTCATGGAGCTTGGGATCACCCCAATTGTCACATCTGGGCTGGTGATGCAGCTCCTTGCGGGGTCAAAGATTATTGAAGTTGACAACAATGTGCGCGAGGATCGTGCCCTCCTAAATGGAGCACAAAAGTTATTGGGTATCCTGATAGCTATTGGTGAGGCAGTTGCCTATGTTCTATCTGGCATGTATGGTAGTGTTGGCCAACTCGGAGTTGGAAATGCCATCCTTATCATCATCCAGCTCTGCTTCGCTGGCATTATTGTGATATGTTTGGATGAACTCCTTCAGAAGGGATATGGTCTTGGCTCTGGAATTTCTCTTTTCATTGCTACCAATATCTGTGAAAACATTATCTGGAAGGCTTTCAGCCCCACCACCATCAACAGTGGCCGAGGAGCTGAGTTTGAAGGAGCAGTTATTGCGCTATTCCATCTGTTGATTACTCGAACAGATAAAGTTCGAGCACTTCGGGAGGCCTTTTACCGGCAGAATCTTCCAAACGTGACCAATCTGCTTGCCACAGTCTTGATCTTCCTTATAGTCATTTACTTCCAAGGGTTCCGTGTGGTTCTGCCTGTCAGATCAAAGAATGCCCGTGGACAGCAGGGTTCTTATCCTATCAAGCTATTCTACACATCCAACATGCCCATCATTTTGCAGTCTGCACTTGTCTCCAACCTTTACTTCATCTCCCAGTTGCTATACAGGAGGTACAGTGGAAATTTCCTTGTGAATCTTTTGGGCAAATGGAAGGAATCTGAGTACTCAGGCGGACAATTCGTTCCTGTTGGTGGTCTAGCATACTATATCACTGCACCTTCAAGCTTAGCTGATATGGCGGCCAACCCATTCCACGCACTCTTCTATCTTGTCTTTATGTTGTCAGCGTGTGCTCTTTTCTCAAAGACATGGATTGAAGTATCTGGATCCTCTGCCAAGGATGTTGCCAAGCAGCTCAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

398

Amino Acids

43.74

Weight (kDa)

9.4

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plug_translocon	PF10559	42 - 76	8.4e-18	Plug domain of Sec61p
SecY	PF00344	77 - 397	6e-60	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29310 AT1G29310 AT2G34250 AT2G34250 AT2G34250
fragaria_vesca	FvH4_3g18150
malus_domestica	MD11G1265500.v1.1
prunus_persica	Prupe.4G160300_v2.0.a1 Prupe.8G009900_v2.0.a1
pyrus_communis	pycom11g23350
rosa_chinensis	RchiOBHm_Chr5g0030581
rosa_laevigata	RLG00000033229
rosa_multiflora	Rmu_ssc0000336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049720
rosa_rugosa	Rorug05G0118500
rosa_samantha	Rh5AG210800 Rh5BG209900 Rh5CG233600 Rh5DG214400
rosa_wichuraiana	Rw5G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	290, 1002, 1070
AclWI	GGATC	5 cut(s)	179, 254, 339, 1152, 1165
AcoI	YGGCCR	3 cut(s)	430, 619, 1071
AcsI	RAATTY	2 cut(s)	543, 952
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	944, 995
AfiI	CCNNNNNNNGG	6 cut(s)	158, 195, 225, 520, 714, 1022
AgsI	TTSAA	4 cut(s)	308, 638, 1053, 1148
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
AloI	GAACNNNNNNTCC	3 cut(s)	35, 996, 1028
Alw21I	GWGCWC	3 cut(s)	355, 697, 1126
Alw26I	GTCTC	1 cut(s)	907
AlwI	GGATC	5 cut(s)	179, 254, 339, 1152, 1165
AoxI	GGCC	5 cut(s)	35, 430, 619, 705, 1071
ApeKI	GCWGC	2 cut(s)	280, 1183
ApoI	RAATTY	2 cut(s)	543, 952
Asp700I	GAANNNNTTC	2 cut(s)	513, 593
AspLEI	GCGC	3 cut(s)	71, 327, 655
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	241, 286, 398
BaeGI	GKGCMC	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	1157
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
Bbv12I	GWGCWC	3 cut(s)	355, 697, 1126
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	4 cut(s)	461, 617, 669, 887
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	907
BfaI	CTAG	1 cut(s)	1028
BfoI	RGCGCY	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	3 cut(s)	281, 1071, 1184
BlpI	GCTNAGC	1 cut(s)	1057
BlsI	GCNGC	3 cut(s)	282, 1072, 1185
BmcAI	AGTACT	1 cut(s)	995
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	2 cut(s)	791, 1159
BmrI	ACTGGG	1 cut(s)	919
BmsI	GCATC	2 cut(s)	189, 267
BmuI	ACTGGG	1 cut(s)	919
Bpu1102I	GCTNAGC	1 cut(s)	1057
BpuEI	CTTGAG	1 cut(s)	1172
BsaJI	CCNNGG	4 cut(s)	622, 784, 826, 1167
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	905, 931, 935, 961
Bsc4I	CCNNNNNNNGG	6 cut(s)	158, 195, 225, 520, 714, 1022
Bse118I	RCCGGY	1 cut(s)	714
Bse1I	ACTGG	1 cut(s)	925
Bse3DI	GCAATG	1 cut(s)	555
BseDI	CCNNGG	4 cut(s)	622, 784, 826, 1167
BseGI	GGATG	6 cut(s)	204, 453, 465, 511, 866, 1177
BseLI	CCNNNNNNNGG	6 cut(s)	158, 195, 225, 520, 714, 1022
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	3 cut(s)	621, 981, 1011
BseNI	ACTGG	1 cut(s)	925
BseRI	GAGGAG	1 cut(s)	639
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	292
BsgI	GTGCAG	3 cut(s)	160, 879, 1029
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	5 cut(s)	37, 432, 621, 707, 1073
BsiHKAI	GWGCWC	3 cut(s)	355, 697, 1126
BsiSI	CCGG	3 cut(s)	56, 177, 715
BslFI	GGGAC	2 cut(s)	68, 241
BslI	CCNNNNNNNGG	6 cut(s)	158, 195, 225, 520, 714, 1022
BsmAI	GTCTC	1 cut(s)	907
BsmFI	GGGAC	2 cut(s)	68, 241
BsmI	GAATGC	2 cut(s)	162, 826
BsnI	GGCC	5 cut(s)	37, 432, 621, 707, 1073
Bsp1286I	GDGCHC	4 cut(s)	340, 355, 697, 1126
Bsp143I	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
Bsp1720I	GCTNAGC	1 cut(s)	1057
BspACI	CCGC	3 cut(s)	290, 1002, 1070
BspANI	GGCC	5 cut(s)	37, 432, 621, 707, 1073
BspCNI	CTCAG	3 cut(s)	622, 982, 1010
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	791, 1159
BspPI	GGATC	5 cut(s)	179, 254, 339, 1152, 1165
BspQI	GCTCTTC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	925
BssAI	RCCGGY	1 cut(s)	714
BssECI	CCNNGG	4 cut(s)	622, 784, 826, 1167
BssMI	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
BssT1I	CCWWGG	2 cut(s)	784, 1167
Bst4CI	ACNGT	5 cut(s)	112, 232, 617, 754, 947
Bst6I	CTCTTC	2 cut(s)	128, 1097
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	484, 747
BstDEI	CTNAG	4 cut(s)	630, 990, 997, 1057
BstDSI	CCRYGG	1 cut(s)	826
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	6 cut(s)	204, 453, 465, 511, 866, 1177
BstFNI	CGCG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 327, 655
BstKTI	GATC	6 cut(s)	187, 249, 334, 762, 815, 1160
BstMAI	GTCTC	1 cut(s)	907
BstMBI	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 483, 650, 1067
BstNSI	RCATGY	2 cut(s)	418, 877
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	2 cut(s)	184, 1157
BstYI	RGATCY	2 cut(s)	184, 1157
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	5 cut(s)	37, 432, 621, 707, 1073
BtgI	CCRYGG	1 cut(s)	826
BtsCI	GGATG	6 cut(s)	204, 453, 465, 511, 866, 1177
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	4 cut(s)	108, 622, 952, 1041
Cac8I	GCNNGC	2 cut(s)	484, 747
CfoI	GCGC	3 cut(s)	71, 327, 655
Cfr10I	RCCGGY	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	2 cut(s)	943, 994
CviAII	CATG	4 cut(s)	235, 415, 874, 1140
CviQI	GTAC	2 cut(s)	943, 994
DdeI	CTNAG	4 cut(s)	630, 990, 997, 1057
DpnI	GATC	6 cut(s)	186, 248, 333, 761, 814, 1159
DpnII	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
EaeI	YGGCCR	3 cut(s)	430, 619, 1071
Eam1104I	CTCTTC	2 cut(s)	128, 1097
EarI	CTCTTC	2 cut(s)	128, 1097
EciI	GGCGGA	1 cut(s)	1017
Eco130I	CCWWGG	2 cut(s)	784, 1167
Eco147I	AGGCCT	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	500
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	784, 1167
ErhI	CCWWGG	2 cut(s)	784, 1167
FaeI	CATG	4 cut(s)	238, 418, 877, 1143
FaqI	GGGAC	2 cut(s)	68, 241
FatI	CATG	4 cut(s)	234, 414, 873, 1139
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	281, 1071, 1184
FokI	GGATG	6 cut(s)	211, 440, 452, 518, 853, 1184
Fsp4HI	GCNGC	3 cut(s)	281, 1071, 1184
FspBI	CTAG	1 cut(s)	1028
GlaI	GCGC	3 cut(s)	70, 326, 654
GluI	GCNGC	3 cut(s)	281, 1071, 1184
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	37, 432, 621, 707, 1073
HapII	CCGG	3 cut(s)	56, 177, 715
HhaI	GCGC	3 cut(s)	71, 327, 655
Hin1II	CATG	4 cut(s)	238, 418, 877, 1143
Hin6I	GCGC	3 cut(s)	69, 325, 653
HinP1I	GCGC	3 cut(s)	69, 325, 653
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	1054
HinfI	GANTC	3 cut(s)	721, 964, 986
HpaII	CCGG	3 cut(s)	56, 177, 715
HphI	GGTGA	3 cut(s)	241, 286, 398
Hpy166II	GTNNAC	2 cut(s)	313, 830
Hpy188I	TCNGA	5 cut(s)	92, 440, 519, 812, 991
Hpy188III	TCNNGA	7 cut(s)	64, 373, 540, 586, 701, 757, 1155
Hpy8I	GTNNAC	2 cut(s)	313, 830
HpyAV	CCTTC	9 cut(s)	49, 91, 199, 514, 524, 583, 632, 976, 1059
HpyCH4III	ACNGT	5 cut(s)	112, 232, 617, 754, 947
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	5 cut(s)	141, 280, 889, 896, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 483, 650, 1067
HpyF3I	CTNAG	4 cut(s)	630, 990, 997, 1057
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	4 cut(s)	238, 418, 877, 1143
HspAI	GCGC	3 cut(s)	69, 325, 653
Kzo9I	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	7 cut(s)	153, 179, 238, 288, 350, 626, 641
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	189, 267
MaeI	CTAG	1 cut(s)	1028
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	2 cut(s)	259, 733
MalI	GATC	6 cut(s)	186, 248, 333, 761, 814, 1159
MboI	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
MboII	GAAGA	5 cut(s)	14, 115, 716, 754, 1084
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	184, 1157
MhlI	GDGCHC	4 cut(s)	340, 355, 697, 1126
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	4 cut(s)	255, 543, 952, 1007
MluNI	TGGCCA	1 cut(s)	432
MmeI	TCCRAC	3 cut(s)	424, 894, 930
Mox20I	TGGCCA	1 cut(s)	432
MroXI	GAANNNNTTC	2 cut(s)	513, 593
MscI	TGGCCA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	432
MspI	CCGG	3 cut(s)	56, 177, 715
MunI	CAATTG	1 cut(s)	255
Mva1269I	GAATGC	2 cut(s)	162, 826
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	4 cut(s)	277, 483, 650, 1067
NdeII	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
NlaIII	CATG	4 cut(s)	238, 418, 877, 1143
NlaIV	GGNNCC	2 cut(s)	791, 1159
NmeAIII	GCCGAG	1 cut(s)	647
NmuCI	GTSAC	2 cut(s)	259, 733
NspI	RCATGY	2 cut(s)	418, 877
PceI	AGGCCT	1 cut(s)	707
PciSI	GCTCTTC	1 cut(s)	128
PctI	GAATGC	2 cut(s)	162, 826
PdmI	GAANNNNTTC	2 cut(s)	513, 593
PfeI	GAWTC	3 cut(s)	721, 964, 986
PkrI	GCNGC	3 cut(s)	282, 1072, 1185
PspN4I	GGNNCC	2 cut(s)	791, 1159
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	184, 1157
RsaI	GTAC	2 cut(s)	944, 995
RsaNI	GTAC	2 cut(s)	943, 994
RseI	CAYNNNNRTG	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	128
SatI	GCNGC	3 cut(s)	281, 1071, 1184
Sau3AI	GATC	6 cut(s)	184, 246, 331, 759, 812, 1157
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	995
SduI	GDGCHC	4 cut(s)	340, 355, 697, 1126
SfaNI	GCATC	2 cut(s)	189, 267
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	1187
SmoI	CTYRAG	1 cut(s)	1187
Sse9I	AATT	4 cut(s)	255, 543, 952, 1007
SseBI	AGGCCT	1 cut(s)	707
SsiI	CCGC	3 cut(s)	290, 1002, 1070
SspMI	CTAG	1 cut(s)	1028
StuI	AGGCCT	1 cut(s)	707
StyI	CCWWGG	2 cut(s)	784, 1167
TaaI	ACNGT	5 cut(s)	112, 232, 617, 754, 947
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	2 cut(s)	676, 691
TasI	AATT	4 cut(s)	255, 543, 952, 1007
TatI	WGTACW	1 cut(s)	993
TauI	GCSGC	1 cut(s)	1073
TfiI	GAWTC	3 cut(s)	721, 964, 986
TscAI	CASTG	4 cut(s)	115, 622, 952, 1048
TseFI	GTSAC	2 cut(s)	259, 733
TseI	GCWGC	2 cut(s)	280, 1183
Tsp45I	GTSAC	2 cut(s)	259, 733
TspDTI	ATGAA	5 cut(s)	14, 115, 522, 544, 907
TspGWI	ACGGA	1 cut(s)	782
TspRI	CASTG	4 cut(s)	115, 622, 952, 1048
XagI	CCTNNNNNAGG	1 cut(s)	518
XapI	RAATTY	2 cut(s)	543, 952
XceI	RCATGY	2 cut(s)	418, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	513, 593
XspI	CTAG	1 cut(s)	1028
ZrmI	AGTACT	1 cut(s)	995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.