Prupe.4G160300_v2.0.a1

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
9181304 .. 9184609
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G160300.1

Sequence Viewer

Length: 1431 bp
ATGGGAGGTGGATTTCGAGTTCTTCATTTGGTCAGGCCCTTTCTTTCGTTTTTGCCAGAAGTTCAGAGCGCTGACAGGAAAGTCCCATTCAGAGAGAAGGTGATATACACCGTGATCTCGCTCTTCATTTTCTTAGTATGCAGCCAGCTTCCTCTGTATGGCATACACTCCACCACTGGTGCAGATCCCTTCTATTGGATGCGTGTTATTCTCGCTTCCAATCGAGGGACTGTCATGGAGCTTGGGATCACCCCAATTGTCACATCTGGGCTGGTCATGCAACTCCTTGCTGGGTCTAAGATTATTGAAGTGGACAACAATGTACGCGAAGATCGTGCTCTTTTGAATGGAGCACAGAAGTTATTGGGCATCCTGATAGCTATTGGTGAGGCAGTTGCCTATGTTCTCTCAGGGATGTATGGTAGTGTTGGCCAACTTGGAGTTGGAAATGCCATTCTCATTATCATTCAGCTCTGCTTTGCTGGTATCATTGTGATATGTTTGGATGAACTACTTCAGAAGGGATATGGTCTAGGCTCTGGAATTTCCCTTTTCATTGCCACCAATATCTGTGAAAACATTATCTGGAAAGCGTTTAGTCCCACCACTATCAACAGTGGGCGAGGAGCTGAATTTGAAGGTGCTGTTATTGCCCTGTTCCATCTGCTGATAACTCGAACAGATAAGGTTCGAGCTCTTCGTGAGGCCTTTTACCGGCAGAATCTTCCAAATGTGACAAATCTGCTTGCGACAGTGTTGATCTTCCTAATAGTAATCTACTTCCAAGGGTTCCGTGTGGTTCTACCTGTGAGATCAAAGAATGCTCGTGGACAGCAGGGTTCCTATCCTATCAAGCTGTTCTACACCTCCAACATGCCCATCATTTTGCAGTCTGCACTTGTCTCCAACCTTTACTTCATCTCCCAGTTGCTGTACAGGAGGTACAGTGGAAATTTCCTTGTGAATCTTTTGGGTAAGTGGAAGGAGTCTGAATATTCAGGTGGACAATTCATTCCTGTTGGTGGTCTTGCATATTATATCACTGCACCTTCAAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCACTTTTCTATCTTGTGTTCATGTTATCAGCCTGTGCGCTTTTCTCAAAAACATGGATTGAAGTTTCTGGATCCTCTGCCAAGGATGTTGCCAAGCAGCTCAAGGAACAACAAATGGTGATGCCTGGTCATCGTGAATCAAACTTGCAGAAGGAGTTGAACCGCTACATTCCCACAGCTGCTGCTTTTGGAGGCATGTGCATCGGTGCACTGACAGTGTTGGCCGATTTCATGGGTGCAATTGGTTCAGGAACAGGAATTCTGCTTGCAGTGACAATCATCTATCAGTACTTTGAGACATTCGAGAAAGAAAGAGCCAGTGAGCTTGGTTTCTTTGGTTTCTAG

Protein Analysis

477

Amino Acids

52.29

Weight (kDa)

9.06

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010749)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccII CGCG 1 cut(s) 327
AciI CCGC 1 cut(s) 1249
AclWI GGATC 4 cut(s) 179, 254, 1152, 1165
AcoI YGGCCR 2 cut(s) 430, 1308
AcsI RAATTY 4 cut(s) 543, 632, 952, 1344
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 4 cut(s) 324, 935, 944, 1376
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
AgsI TTSAA 6 cut(s) 308, 346, 638, 1053, 1148, 1246
AjnI CCWGG 1 cut(s) 1210
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AloI GAACNNNNNNTCC 1 cut(s) 35
Alw21I GWGCWC 4 cut(s) 340, 355, 697, 1297
Alw26I GTCTC 2 cut(s) 907, 1376
Alw44I GTGCAC 1 cut(s) 1293
AlwI GGATC 4 cut(s) 179, 254, 1152, 1165
AlwNI CAGNNNCTG 2 cut(s) 931, 1268
Aor51HI AGCGCT 1 cut(s) 70
AoxI GGCC 4 cut(s) 35, 430, 705, 1308
ApaLI GTGCAC 1 cut(s) 1293
ApeKI GCWGC 5 cut(s) 141, 1070, 1183, 1265, 1268
ApoI RAATTY 4 cut(s) 543, 632, 952, 1344
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 2 cut(s) 71, 1126
AspS9I GGNCC 1 cut(s) 36
AsuHPI GGTGA 4 cut(s) 112, 241, 398, 1216
BaeGI GKGCMC 1 cut(s) 1297
BalI TGGCCA 1 cut(s) 432
BamHI GGATCC 1 cut(s) 1157
BanII GRGCYC 1 cut(s) 697
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BauI CACGAG 1 cut(s) 825
Bbv12I GWGCWC 4 cut(s) 340, 355, 697, 1297
BbvI GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
BccI CCATC 2 cut(s) 669, 887
BcgI CGANNNNNNTGC 4 cut(s) 317, 351, 1270, 1304
BciT130I CCWGG 1 cut(s) 1212
BcoDI GTCTC 2 cut(s) 907, 1376
BfaI CTAG 2 cut(s) 533, 1429
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
BlpI GCTNAGC 1 cut(s) 1057
BlsI GCNGC 5 cut(s) 143, 1072, 1185, 1267, 1270
BmcAI AGTACT 1 cut(s) 1376
Bme1390I CCNGG 1 cut(s) 1212
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 3 cut(s) 791, 841, 1159
BmrFI CCNGG 1 cut(s) 1212
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 4 cut(s) 189, 378, 1197, 1296
BmuI ACTGGG 1 cut(s) 919
Bpu1102I GCTNAGC 1 cut(s) 1057
BpuEI CTTGAG 1 cut(s) 1172
BsaJI CCNNGG 2 cut(s) 784, 1167
BsaXI ACNNNNNCTCC 4 cut(s) 905, 931, 935, 961
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 3 cut(s) 181, 925, 1404
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 1212
BseDI CCNNGG 2 cut(s) 784, 1167
BseGI GGATG 5 cut(s) 204, 369, 420, 511, 1177
BseLI CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 3 cut(s) 181, 925, 1404
BseRI GAGGAG 1 cut(s) 639
BseSI GKGCMC 1 cut(s) 1297
BseXI GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 3 cut(s) 201, 879, 1029
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 4 cut(s) 37, 432, 707, 1310
BsiHKAI GWGCWC 4 cut(s) 340, 355, 697, 1297
BsiSI CCGG 1 cut(s) 715
BslFI GGGAC 3 cut(s) 68, 241, 585
BslI CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
BsmAI GTCTC 2 cut(s) 907, 1376
BsmFI GGGAC 3 cut(s) 68, 241, 585
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 4 cut(s) 37, 432, 707, 1310
Bsp1286I GDGCHC 4 cut(s) 340, 355, 697, 1297
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
Bsp1720I GCTNAGC 1 cut(s) 1057
BspACI CCGC 1 cut(s) 1249
BspANI GGCC 4 cut(s) 37, 432, 707, 1310
BspCNI CTCAG 1 cut(s) 422
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 3 cut(s) 791, 841, 1159
BspPI GGATC 4 cut(s) 179, 254, 1152, 1165
BspQI GCTCTTC 2 cut(s) 128, 702
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 714
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 3 cut(s) 181, 925, 1404
BssAI RCCGGY 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 784, 1167
BssMI GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 784, 1167
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 1212
Bst4CI ACNGT 6 cut(s) 112, 232, 617, 754, 947, 1303
Bst6I CTCTTC 2 cut(s) 128, 702
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 3 cut(s) 146, 747, 1353
BstDEI CTNAG 4 cut(s) 133, 297, 409, 1057
BstF5I GGATG 5 cut(s) 204, 369, 420, 511, 1177
BstFNI CGCG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 2 cut(s) 71, 1126
BstKTI GATC 7 cut(s) 117, 187, 249, 334, 762, 815, 1160
BstMAI GTCTC 2 cut(s) 907, 1376
BstMBI GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
BstMWI GCNNNNNNNGC 3 cut(s) 277, 650, 1067
BstNI CCWGG 1 cut(s) 1212
BstNSI RCATGY 2 cut(s) 877, 1285
BstSCI CCNGG 1 cut(s) 1210
BstSLI GKGCMC 1 cut(s) 1297
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
BstX2I RGATCY 2 cut(s) 184, 1157
BstYI RGATCY 2 cut(s) 184, 1157
BsuRI GGCC 4 cut(s) 37, 432, 707, 1310
BtsCI GGATG 5 cut(s) 204, 369, 420, 511, 1177
BtsI GCAGTG 2 cut(s) 1041, 1362
BtsIMutI CAGTG 9 cut(s) 174, 622, 759, 952, 1041, 1295, 1308, 1362, 1411
Cac8I GCNNGC 3 cut(s) 146, 747, 1353
CaiI CAGNNNCTG 2 cut(s) 931, 1268
CfoI GCGC 2 cut(s) 71, 1126
Cfr10I RCCGGY 1 cut(s) 714
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 4 cut(s) 323, 934, 943, 1375
CviAII CATG 8 cut(s) 235, 277, 874, 1085, 1108, 1140, 1282, 1318
CviQI GTAC 4 cut(s) 323, 934, 943, 1375
DdeI CTNAG 4 cut(s) 133, 297, 409, 1057
DpnI GATC 7 cut(s) 116, 186, 248, 333, 761, 814, 1159
DpnII GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 430, 1308
Eam1104I CTCTTC 2 cut(s) 128, 702
EarI CTCTTC 2 cut(s) 128, 702
Ecl136II GAGCTC 1 cut(s) 695
Eco130I CCWWGG 2 cut(s) 784, 1167
Eco147I AGGCCT 1 cut(s) 707
Eco24I GRGCYC 1 cut(s) 697
Eco47III AGCGCT 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 695
EcoO109I RGGNCCY 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 1344
EcoRII CCWGG 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 784, 1167
EcoT38I GRGCYC 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 784, 1167
FaeI CATG 8 cut(s) 238, 280, 877, 1088, 1111, 1143, 1285, 1321
FaqI GGGAC 3 cut(s) 68, 241, 585
FatI CATG 8 cut(s) 234, 276, 873, 1084, 1107, 1139, 1281, 1317
Fnu4HI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
FokI GGATG 5 cut(s) 211, 356, 427, 518, 1184
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
FspBI CTAG 2 cut(s) 533, 1429
GlaI GCGC 2 cut(s) 70, 1125
GluI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
GsaI CCCAGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 4 cut(s) 37, 432, 707, 1310
HapII CCGG 1 cut(s) 715
HhaI GCGC 2 cut(s) 71, 1126
Hin1II CATG 8 cut(s) 238, 280, 877, 1088, 1111, 1143, 1285, 1321
Hin6I GCGC 2 cut(s) 69, 1124
HinP1I GCGC 2 cut(s) 69, 1124
HindIII AAGCTT 1 cut(s) 1054
HinfI GANTC 4 cut(s) 721, 964, 986, 1223
HpaII CCGG 1 cut(s) 715
HphI GGTGA 4 cut(s) 112, 241, 398, 1216
Hpy166II GTNNAC 4 cut(s) 313, 830, 1004, 1295
Hpy188I TCNGA 4 cut(s) 66, 92, 519, 991
Hpy188III TCNNGA 8 cut(s) 373, 540, 586, 701, 1155, 1220, 1335, 1390
Hpy8I GTNNAC 4 cut(s) 313, 830, 1004, 1295
HpyAV CCTTC 7 cut(s) 91, 199, 514, 632, 976, 1059, 1231
HpyCH4III ACNGT 6 cut(s) 112, 232, 617, 754, 947, 1303
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 650, 1067
HpyF3I CTNAG 4 cut(s) 133, 297, 409, 1057
Hsp92II CATG 8 cut(s) 238, 280, 877, 1088, 1111, 1143, 1285, 1321
HspAI GCGC 2 cut(s) 69, 1124
Kzo9I GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
LguI GCTCTTC 2 cut(s) 128, 702
LmnI GCTCC 3 cut(s) 238, 350, 626
Lsp1109I GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
LweI GCATC 4 cut(s) 189, 378, 1197, 1296
MaeI CTAG 2 cut(s) 533, 1429
MaeIII GTNAC 3 cut(s) 259, 733, 1357
MalI GATC 7 cut(s) 116, 186, 248, 333, 761, 814, 1159
MboI GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
MboII GAAGA 6 cut(s) 14, 115, 341, 689, 716, 754
MfeI CAATTG 2 cut(s) 255, 1326
MflI RGATCY 2 cut(s) 184, 1157
MhlI GDGCHC 4 cut(s) 340, 355, 697, 1297
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 7 cut(s) 255, 543, 632, 952, 1007, 1326, 1344
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 1 cut(s) 995
MmeI TCCRAC 3 cut(s) 424, 894, 930
MnlI CCTC 9 cut(s) 162, 218, 382, 617, 697, 877, 933, 1171, 1271
Mox20I TGGCCA 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 1265
MspI CCGG 1 cut(s) 715
MspR9I CCNGG 1 cut(s) 1212
MunI CAATTG 2 cut(s) 255, 1326
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 1 cut(s) 1212
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 277, 650, 1067
NdeII GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
NlaIII CATG 8 cut(s) 238, 280, 877, 1088, 1111, 1143, 1285, 1321
NlaIV GGNNCC 3 cut(s) 791, 841, 1159
NmuCI GTSAC 3 cut(s) 259, 733, 1357
NspI RCATGY 2 cut(s) 877, 1285
PceI AGGCCT 1 cut(s) 707
PciSI GCTCTTC 2 cut(s) 128, 702
PcsI WCGNNNNNNNCGW 2 cut(s) 331, 697
PctI GAATGC 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 3 cut(s) 721, 964, 1223
PkrI GCNGC 5 cut(s) 143, 1072, 1185, 1267, 1270
PleI GAGTC 1 cut(s) 994
PpsI GAGTC 1 cut(s) 994
Psp124BI GAGCTC 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 1210
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 1210
PspN4I GGNNCC 3 cut(s) 791, 841, 1159
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 2 cut(s) 931, 1268
PsuI RGATCY 2 cut(s) 184, 1157
PvuII CAGCTG 1 cut(s) 1265
RsaI GTAC 4 cut(s) 324, 935, 944, 1376
RsaNI GTAC 4 cut(s) 323, 934, 943, 1375
SacI GAGCTC 1 cut(s) 697
SapI GCTCTTC 2 cut(s) 128, 702
SatI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
Sau3AI GATC 7 cut(s) 114, 184, 246, 331, 759, 812, 1157
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 1376
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 1 cut(s) 1212
SduI GDGCHC 4 cut(s) 340, 355, 697, 1297
SfaNI GCATC 4 cut(s) 189, 378, 1197, 1296
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 7 cut(s) 255, 543, 632, 952, 1007, 1326, 1344
SseBI AGGCCT 1 cut(s) 707
SsiI CCGC 1 cut(s) 1249
SspI AATATT 1 cut(s) 995
SspMI CTAG 2 cut(s) 533, 1429
SstI GAGCTC 1 cut(s) 697
StuI AGGCCT 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 1210
StyI CCWWGG 2 cut(s) 784, 1167
TaaI ACNGT 6 cut(s) 112, 232, 617, 754, 947, 1303
TaqI TCGA 5 cut(s) 16, 223, 676, 691, 1389
TasI AATT 7 cut(s) 255, 543, 632, 952, 1007, 1326, 1344
TatI WGTACW 2 cut(s) 933, 1374
TfiI GAWTC 3 cut(s) 721, 964, 1223
TscAI CASTG 9 cut(s) 181, 622, 759, 952, 1048, 1302, 1308, 1362, 1411
TseFI GTSAC 3 cut(s) 259, 733, 1357
TseI GCWGC 5 cut(s) 141, 1070, 1183, 1265, 1268
Tsp45I GTSAC 3 cut(s) 259, 733, 1357
TspDTI ATGAA 8 cut(s) 14, 115, 522, 544, 907, 1000, 1096, 1306
TspGWI ACGGA 1 cut(s) 782
TspRI CASTG 9 cut(s) 181, 622, 759, 952, 1048, 1302, 1308, 1362, 1411
VneI GTGCAC 1 cut(s) 1293
XapI RAATTY 4 cut(s) 543, 632, 952, 1344
XceI RCATGY 2 cut(s) 877, 1285
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 2 cut(s) 533, 1429
ZrmI AGTACT 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.