Belongs to the SecY SEC61-alpha family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29310 AT1G29310 AT2G34250 AT2G34250 AT2G34250 |
| fragaria_vesca | FvH4_3g18150 |
| malus_domestica | MD11G1265500.v1.1 |
| prunus_persica | Prupe.4G160300_v2.0.a1 Prupe.8G009900_v2.0.a1 |
| pyrus_communis | pycom11g23350 |
| rosa_chinensis | RchiOBHm_Chr5g0030581 |
| rosa_laevigata | RLG00000033229 |
| rosa_multiflora | Rmu_ssc0000336.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00049720 |
| rosa_rugosa | Rorug05G0118500 |
| rosa_samantha | Rh5AG210800 Rh5BG209900 Rh5CG233600 Rh5DG214400 |
| rosa_wichuraiana | Rw5G019290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 80 |
| AccII | CGCG | 1 cut(s) | 327 |
| AciI | CCGC | 1 cut(s) | 1249 |
| AclWI | GGATC | 4 cut(s) | 179, 254, 1152, 1165 |
| AcoI | YGGCCR | 2 cut(s) | 430, 1308 |
| AcsI | RAATTY | 4 cut(s) | 543, 632, 952, 1344 |
| AcuI | CTGAAG | 1 cut(s) | 500 |
| AfaI | GTAC | 4 cut(s) | 324, 935, 944, 1376 |
| AfeI | AGCGCT | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 158, 195, 225, 714, 1022 |
| AgsI | TTSAA | 6 cut(s) | 308, 346, 638, 1053, 1148, 1246 |
| AjnI | CCWGG | 1 cut(s) | 1210 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 899, 931 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 35 |
| Alw21I | GWGCWC | 4 cut(s) | 340, 355, 697, 1297 |
| Alw26I | GTCTC | 2 cut(s) | 907, 1376 |
| Alw44I | GTGCAC | 1 cut(s) | 1293 |
| AlwI | GGATC | 4 cut(s) | 179, 254, 1152, 1165 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 931, 1268 |
| Aor51HI | AGCGCT | 1 cut(s) | 70 |
| AoxI | GGCC | 4 cut(s) | 35, 430, 705, 1308 |
| ApaLI | GTGCAC | 1 cut(s) | 1293 |
| ApeKI | GCWGC | 5 cut(s) | 141, 1070, 1183, 1265, 1268 |
| ApoI | RAATTY | 4 cut(s) | 543, 632, 952, 1344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 513 |
| AspLEI | GCGC | 2 cut(s) | 71, 1126 |
| AspS9I | GGNCC | 1 cut(s) | 36 |
| AsuHPI | GGTGA | 4 cut(s) | 112, 241, 398, 1216 |
| BaeGI | GKGCMC | 1 cut(s) | 1297 |
| BalI | TGGCCA | 1 cut(s) | 432 |
| BamHI | GGATCC | 1 cut(s) | 1157 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 89, 121 |
| BauI | CACGAG | 1 cut(s) | 825 |
| Bbv12I | GWGCWC | 4 cut(s) | 340, 355, 697, 1297 |
| BbvI | GCAGC | 5 cut(s) | 153, 1082, 1195, 1252, 1255 |
| BccI | CCATC | 2 cut(s) | 669, 887 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 317, 351, 1270, 1304 |
| BciT130I | CCWGG | 1 cut(s) | 1212 |
| BcoDI | GTCTC | 2 cut(s) | 907, 1376 |
| BfaI | CTAG | 2 cut(s) | 533, 1429 |
| BfoI | RGCGCY | 1 cut(s) | 72 |
| BisI | GCNGC | 5 cut(s) | 142, 1071, 1184, 1266, 1269 |
| BlpI | GCTNAGC | 1 cut(s) | 1057 |
| BlsI | GCNGC | 5 cut(s) | 143, 1072, 1185, 1267, 1270 |
| BmcAI | AGTACT | 1 cut(s) | 1376 |
| Bme1390I | CCNGG | 1 cut(s) | 1212 |
| BmgT120I | GGNCC | 1 cut(s) | 36 |
| BmiI | GGNNCC | 3 cut(s) | 791, 841, 1159 |
| BmrFI | CCNGG | 1 cut(s) | 1212 |
| BmrI | ACTGGG | 1 cut(s) | 919 |
| BmsI | GCATC | 4 cut(s) | 189, 378, 1197, 1296 |
| BmuI | ACTGGG | 1 cut(s) | 919 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1057 |
| BpuEI | CTTGAG | 1 cut(s) | 1172 |
| BsaJI | CCNNGG | 2 cut(s) | 784, 1167 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 905, 931, 935, 961 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 158, 195, 225, 714, 1022 |
| Bse118I | RCCGGY | 1 cut(s) | 714 |
| Bse1I | ACTGG | 3 cut(s) | 181, 925, 1404 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseBI | CCWGG | 1 cut(s) | 1212 |
| BseDI | CCNNGG | 2 cut(s) | 784, 1167 |
| BseGI | GGATG | 5 cut(s) | 204, 369, 420, 511, 1177 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 158, 195, 225, 714, 1022 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 1 cut(s) | 423 |
| BseNI | ACTGG | 3 cut(s) | 181, 925, 1404 |
| BseRI | GAGGAG | 1 cut(s) | 639 |
| BseSI | GKGCMC | 1 cut(s) | 1297 |
| BseXI | GCAGC | 5 cut(s) | 153, 1082, 1195, 1252, 1255 |
| BseYI | CCCAGC | 1 cut(s) | 290 |
| BsgI | GTGCAG | 3 cut(s) | 201, 879, 1029 |
| Bsh1236I | CGCG | 1 cut(s) | 327 |
| BshFI | GGCC | 4 cut(s) | 37, 432, 707, 1310 |
| BsiHKAI | GWGCWC | 4 cut(s) | 340, 355, 697, 1297 |
| BsiSI | CCGG | 1 cut(s) | 715 |
| BslFI | GGGAC | 3 cut(s) | 68, 241, 585 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 158, 195, 225, 714, 1022 |
| BsmAI | GTCTC | 2 cut(s) | 907, 1376 |
| BsmFI | GGGAC | 3 cut(s) | 68, 241, 585 |
| BsmI | GAATGC | 1 cut(s) | 826 |
| BsnI | GGCC | 4 cut(s) | 37, 432, 707, 1310 |
| Bsp1286I | GDGCHC | 4 cut(s) | 340, 355, 697, 1297 |
| Bsp1407I | TGTACA | 1 cut(s) | 933 |
| Bsp143I | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1057 |
| BspACI | CCGC | 1 cut(s) | 1249 |
| BspANI | GGCC | 4 cut(s) | 37, 432, 707, 1310 |
| BspCNI | CTCAG | 1 cut(s) | 422 |
| BspFNI | CGCG | 1 cut(s) | 327 |
| BspLI | GGNNCC | 3 cut(s) | 791, 841, 1159 |
| BspPI | GGATC | 4 cut(s) | 179, 254, 1152, 1165 |
| BspQI | GCTCTTC | 2 cut(s) | 128, 702 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrFI | RCCGGY | 1 cut(s) | 714 |
| BsrGI | TGTACA | 1 cut(s) | 933 |
| BsrI | ACTGG | 3 cut(s) | 181, 925, 1404 |
| BssAI | RCCGGY | 1 cut(s) | 714 |
| BssECI | CCNNGG | 2 cut(s) | 784, 1167 |
| BssMI | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| BssSI | CACGAG | 1 cut(s) | 825 |
| BssT1I | CCWWGG | 2 cut(s) | 784, 1167 |
| Bst2BI | CACGAG | 1 cut(s) | 825 |
| Bst2UI | CCWGG | 1 cut(s) | 1212 |
| Bst4CI | ACNGT | 6 cut(s) | 112, 232, 617, 754, 947, 1303 |
| Bst6I | CTCTTC | 2 cut(s) | 128, 702 |
| BstAUI | TGTACA | 1 cut(s) | 933 |
| BstC8I | GCNNGC | 3 cut(s) | 146, 747, 1353 |
| BstDEI | CTNAG | 4 cut(s) | 133, 297, 409, 1057 |
| BstF5I | GGATG | 5 cut(s) | 204, 369, 420, 511, 1177 |
| BstFNI | CGCG | 1 cut(s) | 327 |
| BstH2I | RGCGCY | 1 cut(s) | 72 |
| BstHHI | GCGC | 2 cut(s) | 71, 1126 |
| BstKTI | GATC | 7 cut(s) | 117, 187, 249, 334, 762, 815, 1160 |
| BstMAI | GTCTC | 2 cut(s) | 907, 1376 |
| BstMBI | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 277, 650, 1067 |
| BstNI | CCWGG | 1 cut(s) | 1212 |
| BstNSI | RCATGY | 2 cut(s) | 877, 1285 |
| BstSCI | CCNGG | 1 cut(s) | 1210 |
| BstSLI | GKGCMC | 1 cut(s) | 1297 |
| BstUI | CGCG | 1 cut(s) | 327 |
| BstV1I | GCAGC | 5 cut(s) | 153, 1082, 1195, 1252, 1255 |
| BstX2I | RGATCY | 2 cut(s) | 184, 1157 |
| BstYI | RGATCY | 2 cut(s) | 184, 1157 |
| BsuRI | GGCC | 4 cut(s) | 37, 432, 707, 1310 |
| BtsCI | GGATG | 5 cut(s) | 204, 369, 420, 511, 1177 |
| BtsI | GCAGTG | 2 cut(s) | 1041, 1362 |
| BtsIMutI | CAGTG | 9 cut(s) | 174, 622, 759, 952, 1041, 1295, 1308, 1362, 1411 |
| Cac8I | GCNNGC | 3 cut(s) | 146, 747, 1353 |
| CaiI | CAGNNNCTG | 2 cut(s) | 931, 1268 |
| CfoI | GCGC | 2 cut(s) | 71, 1126 |
| Cfr10I | RCCGGY | 1 cut(s) | 714 |
| Cfr13I | GGNCC | 1 cut(s) | 36 |
| Csp6I | GTAC | 4 cut(s) | 323, 934, 943, 1375 |
| CviAII | CATG | 8 cut(s) | 235, 277, 874, 1085, 1108, 1140, 1282, 1318 |
| CviQI | GTAC | 4 cut(s) | 323, 934, 943, 1375 |
| DdeI | CTNAG | 4 cut(s) | 133, 297, 409, 1057 |
| DpnI | GATC | 7 cut(s) | 116, 186, 248, 333, 761, 814, 1159 |
| DpnII | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 80 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 80 |
| EaeI | YGGCCR | 2 cut(s) | 430, 1308 |
| Eam1104I | CTCTTC | 2 cut(s) | 128, 702 |
| EarI | CTCTTC | 2 cut(s) | 128, 702 |
| Ecl136II | GAGCTC | 1 cut(s) | 695 |
| Eco130I | CCWWGG | 2 cut(s) | 784, 1167 |
| Eco147I | AGGCCT | 1 cut(s) | 707 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco47III | AGCGCT | 1 cut(s) | 70 |
| Eco53kI | GAGCTC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 1 cut(s) | 500 |
| EcoICRI | GAGCTC | 1 cut(s) | 695 |
| EcoO109I | RGGNCCY | 1 cut(s) | 36 |
| EcoRI | GAATTC | 1 cut(s) | 1344 |
| EcoRII | CCWGG | 1 cut(s) | 1210 |
| EcoT14I | CCWWGG | 2 cut(s) | 784, 1167 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| ErhI | CCWWGG | 2 cut(s) | 784, 1167 |
| FaeI | CATG | 8 cut(s) | 238, 280, 877, 1088, 1111, 1143, 1285, 1321 |
| FaqI | GGGAC | 3 cut(s) | 68, 241, 585 |
| FatI | CATG | 8 cut(s) | 234, 276, 873, 1084, 1107, 1139, 1281, 1317 |
| Fnu4HI | GCNGC | 5 cut(s) | 142, 1071, 1184, 1266, 1269 |
| FokI | GGATG | 5 cut(s) | 211, 356, 427, 518, 1184 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 5 cut(s) | 142, 1071, 1184, 1266, 1269 |
| FspBI | CTAG | 2 cut(s) | 533, 1429 |
| GlaI | GCGC | 2 cut(s) | 70, 1125 |
| GluI | GCNGC | 5 cut(s) | 142, 1071, 1184, 1266, 1269 |
| GsaI | CCCAGC | 1 cut(s) | 294 |
| HaeII | RGCGCY | 1 cut(s) | 72 |
| HaeIII | GGCC | 4 cut(s) | 37, 432, 707, 1310 |
| HapII | CCGG | 1 cut(s) | 715 |
| HhaI | GCGC | 2 cut(s) | 71, 1126 |
| Hin1II | CATG | 8 cut(s) | 238, 280, 877, 1088, 1111, 1143, 1285, 1321 |
| Hin6I | GCGC | 2 cut(s) | 69, 1124 |
| HinP1I | GCGC | 2 cut(s) | 69, 1124 |
| HindIII | AAGCTT | 1 cut(s) | 1054 |
| HinfI | GANTC | 4 cut(s) | 721, 964, 986, 1223 |
| HpaII | CCGG | 1 cut(s) | 715 |
| HphI | GGTGA | 4 cut(s) | 112, 241, 398, 1216 |
| Hpy166II | GTNNAC | 4 cut(s) | 313, 830, 1004, 1295 |
| Hpy188I | TCNGA | 4 cut(s) | 66, 92, 519, 991 |
| Hpy188III | TCNNGA | 8 cut(s) | 373, 540, 586, 701, 1155, 1220, 1335, 1390 |
| Hpy8I | GTNNAC | 4 cut(s) | 313, 830, 1004, 1295 |
| HpyAV | CCTTC | 7 cut(s) | 91, 199, 514, 632, 976, 1059, 1231 |
| HpyCH4III | ACNGT | 6 cut(s) | 112, 232, 617, 754, 947, 1303 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 277, 650, 1067 |
| HpyF3I | CTNAG | 4 cut(s) | 133, 297, 409, 1057 |
| Hsp92II | CATG | 8 cut(s) | 238, 280, 877, 1088, 1111, 1143, 1285, 1321 |
| HspAI | GCGC | 2 cut(s) | 69, 1124 |
| Kzo9I | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| LguI | GCTCTTC | 2 cut(s) | 128, 702 |
| LmnI | GCTCC | 3 cut(s) | 238, 350, 626 |
| Lsp1109I | GCAGC | 5 cut(s) | 153, 1082, 1195, 1252, 1255 |
| LweI | GCATC | 4 cut(s) | 189, 378, 1197, 1296 |
| MaeI | CTAG | 2 cut(s) | 533, 1429 |
| MaeIII | GTNAC | 3 cut(s) | 259, 733, 1357 |
| MalI | GATC | 7 cut(s) | 116, 186, 248, 333, 761, 814, 1159 |
| MboI | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| MboII | GAAGA | 6 cut(s) | 14, 115, 341, 689, 716, 754 |
| MfeI | CAATTG | 2 cut(s) | 255, 1326 |
| MflI | RGATCY | 2 cut(s) | 184, 1157 |
| MhlI | GDGCHC | 4 cut(s) | 340, 355, 697, 1297 |
| MlsI | TGGCCA | 1 cut(s) | 432 |
| MluCI | AATT | 7 cut(s) | 255, 543, 632, 952, 1007, 1326, 1344 |
| MluNI | TGGCCA | 1 cut(s) | 432 |
| MlyI | GAGTC | 1 cut(s) | 995 |
| MmeI | TCCRAC | 3 cut(s) | 424, 894, 930 |
| MnlI | CCTC | 9 cut(s) | 162, 218, 382, 617, 697, 877, 933, 1171, 1271 |
| Mox20I | TGGCCA | 1 cut(s) | 432 |
| MroXI | GAANNNNTTC | 1 cut(s) | 513 |
| MscI | TGGCCA | 1 cut(s) | 432 |
| Msp20I | TGGCCA | 1 cut(s) | 432 |
| MspA1I | CMGCKG | 1 cut(s) | 1265 |
| MspI | CCGG | 1 cut(s) | 715 |
| MspR9I | CCNGG | 1 cut(s) | 1212 |
| MunI | CAATTG | 2 cut(s) | 255, 1326 |
| Mva1269I | GAATGC | 1 cut(s) | 826 |
| MvaI | CCWGG | 1 cut(s) | 1212 |
| MvnI | CGCG | 1 cut(s) | 327 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 277, 650, 1067 |
| NdeII | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| NlaIII | CATG | 8 cut(s) | 238, 280, 877, 1088, 1111, 1143, 1285, 1321 |
| NlaIV | GGNNCC | 3 cut(s) | 791, 841, 1159 |
| NmuCI | GTSAC | 3 cut(s) | 259, 733, 1357 |
| NspI | RCATGY | 2 cut(s) | 877, 1285 |
| PceI | AGGCCT | 1 cut(s) | 707 |
| PciSI | GCTCTTC | 2 cut(s) | 128, 702 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 331, 697 |
| PctI | GAATGC | 1 cut(s) | 826 |
| PdmI | GAANNNNTTC | 1 cut(s) | 513 |
| PfeI | GAWTC | 3 cut(s) | 721, 964, 1223 |
| PkrI | GCNGC | 5 cut(s) | 143, 1072, 1185, 1267, 1270 |
| PleI | GAGTC | 1 cut(s) | 994 |
| PpsI | GAGTC | 1 cut(s) | 994 |
| Psp124BI | GAGCTC | 1 cut(s) | 697 |
| Psp6I | CCWGG | 1 cut(s) | 1210 |
| PspFI | CCCAGC | 1 cut(s) | 290 |
| PspGI | CCWGG | 1 cut(s) | 1210 |
| PspN4I | GGNNCC | 3 cut(s) | 791, 841, 1159 |
| PspPI | GGNCC | 1 cut(s) | 36 |
| PstNI | CAGNNNCTG | 2 cut(s) | 931, 1268 |
| PsuI | RGATCY | 2 cut(s) | 184, 1157 |
| PvuII | CAGCTG | 1 cut(s) | 1265 |
| RsaI | GTAC | 4 cut(s) | 324, 935, 944, 1376 |
| RsaNI | GTAC | 4 cut(s) | 323, 934, 943, 1375 |
| SacI | GAGCTC | 1 cut(s) | 697 |
| SapI | GCTCTTC | 2 cut(s) | 128, 702 |
| SatI | GCNGC | 5 cut(s) | 142, 1071, 1184, 1266, 1269 |
| Sau3AI | GATC | 7 cut(s) | 114, 184, 246, 331, 759, 812, 1157 |
| Sau96I | GGNCC | 1 cut(s) | 36 |
| ScaI | AGTACT | 1 cut(s) | 1376 |
| SchI | GAGTC | 1 cut(s) | 995 |
| ScrFI | CCNGG | 1 cut(s) | 1212 |
| SduI | GDGCHC | 4 cut(s) | 340, 355, 697, 1297 |
| SfaNI | GCATC | 4 cut(s) | 189, 378, 1197, 1296 |
| SmlI | CTYRAG | 1 cut(s) | 1187 |
| SmoI | CTYRAG | 1 cut(s) | 1187 |
| Sse9I | AATT | 7 cut(s) | 255, 543, 632, 952, 1007, 1326, 1344 |
| SseBI | AGGCCT | 1 cut(s) | 707 |
| SsiI | CCGC | 1 cut(s) | 1249 |
| SspI | AATATT | 1 cut(s) | 995 |
| SspMI | CTAG | 2 cut(s) | 533, 1429 |
| SstI | GAGCTC | 1 cut(s) | 697 |
| StuI | AGGCCT | 1 cut(s) | 707 |
| StyD4I | CCNGG | 1 cut(s) | 1210 |
| StyI | CCWWGG | 2 cut(s) | 784, 1167 |
| TaaI | ACNGT | 6 cut(s) | 112, 232, 617, 754, 947, 1303 |
| TaqI | TCGA | 5 cut(s) | 16, 223, 676, 691, 1389 |
| TasI | AATT | 7 cut(s) | 255, 543, 632, 952, 1007, 1326, 1344 |
| TatI | WGTACW | 2 cut(s) | 933, 1374 |
| TfiI | GAWTC | 3 cut(s) | 721, 964, 1223 |
| TscAI | CASTG | 9 cut(s) | 181, 622, 759, 952, 1048, 1302, 1308, 1362, 1411 |
| TseFI | GTSAC | 3 cut(s) | 259, 733, 1357 |
| TseI | GCWGC | 5 cut(s) | 141, 1070, 1183, 1265, 1268 |
| Tsp45I | GTSAC | 3 cut(s) | 259, 733, 1357 |
| TspDTI | ATGAA | 8 cut(s) | 14, 115, 522, 544, 907, 1000, 1096, 1306 |
| TspGWI | ACGGA | 1 cut(s) | 782 |
| TspRI | CASTG | 9 cut(s) | 181, 622, 759, 952, 1048, 1302, 1308, 1362, 1411 |
| VneI | GTGCAC | 1 cut(s) | 1293 |
| XapI | RAATTY | 4 cut(s) | 543, 632, 952, 1344 |
| XceI | RCATGY | 2 cut(s) | 877, 1285 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 440 |
| XmnI | GAANNNNTTC | 1 cut(s) | 513 |
| XspI | CTAG | 2 cut(s) | 533, 1429 |
| ZrmI | AGTACT | 1 cut(s) | 1376 |