Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013952

Physical Location & Seq

Genomic Coordinates Forward (+)

10537457 .. 10540044

Gene Structure 2588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGGTTTTGCCACAGCCAGTCACTTTAGATAACCACATCTCCCTAATCCCCACATACAAACCGGTTCCGGTTCTCACTTCCCATTCAATCCCCGTCGTCAACCTAGCCGATCCGGAAGCGAAAACCCGAATCGTAAAAGCCTGCGAGGAGTTCGGGTTCTTCAAGGTCGTAAACCACGGAGTCCGACCCGAACTCATGACTCGGTTAGAGCAGGAGGCTATTGGCTTCTTCGGCTTGCCTCAGTCTCTTAAAAACCGGGCCGGTCCACCTGAACCGTACGGTTATGGTAATAAACGGATTGGACCAAACGGTGACGTTGGTTGGATTGAGTATCTCCTCCTCAATGCTAATCCTCAGCTCTCCTCTCCTAAAACCTCCGCCGTTTTCCGTCAAACCCCTCAAATTTTCCGTGAGTCGGTGGAGGAGTACATGAAGGAGATTAAGGAAGTGTCGTACAAGGTGTTGGAGATGGTTGCCGAAGAACTAGGGATAGAGCCAAGGGACACTCTGAGTAAAATGCTGAGAGATGAGAAGAGTGACTCGTGCCTGAGACTAAACCATTATCCGGCGGCGGAGGAAGAGGCGGAGAAGATGGTGAAGGTGGGGTTTGGGGAACACACAGACCCACAGATAATCTCAGTGCTAAGATCTAATAACACGGCGGGTCTTCAAATCTGTGTGAAAGATGGAAGTTGGGTCGCTGTCCCTCCTGATCACTCTTCTTTCTTCATTAATGTTGGAGATGCTCTTCAGGTTATGACTAACGGGAGGTTCAAGAGTGTTAAACACAGGGTCTTAGCCGATACAAGGAGATCGAGGATTTCAATGATATATTTCGGCGGACCGCCATTGAGCCAGAAGATCGCACCATTGCCATGCCTTGTCCCTGAGCAAGATGATTGGCTTTACAAAGAATTCACTTGGTCTCAATACAAATCTTCTGCTTACAAGTCTAAGCTTGGTGATTATAGACTTGGTCTCTTTGAGAAACAACCTCTTCTCAATCATAAAACCCTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

341

Amino Acids

38.46

Weight (kDa)

7.68

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	31 - 124	1.2e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	181 - 253	4.5e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30040 AT1G30040
fragaria_vesca	FvH4_3g05530
malus_domestica	MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica	Prupe.4G080700_v2.0.a1
pyrus_communis	pycom05g26290
rosa_chinensis	RchiOBHm_Chr5g0014211
rosa_laevigata	RLG00000032090
rosa_multiflora	Rmu_ssc0000120.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062380
rosa_rugosa	Rorug05G0016200
rosa_samantha	Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana	Rw5G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	115
AciI	CCGC	7 cut(s)	381, 572, 575, 587, 665, 843, 848
AclWI	GGATC	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	405, 917
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	3 cut(s)	281, 431, 458
AfiI	CCNNNNNNNGG	3 cut(s)	418, 568, 810
AgeI	ACCGGT	1 cut(s)	64
AgsI	TTSAA	5 cut(s)	90, 166, 674, 778, 828
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	361, 961
AluI	AGCT	2 cut(s)	361, 961
Alw26I	GTCTC	4 cut(s)	252, 547, 933, 986
AlwI	GGATC	1 cut(s)	107
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	405, 917
AseI	ATTAAT	1 cut(s)	735
AsiGI	ACCGGT	1 cut(s)	64
AspS9I	GGNCC	4 cut(s)	261, 266, 305, 845
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	326, 610, 977
AvaII	GGWCC	3 cut(s)	266, 305, 845
BauI	CACGAG	1 cut(s)	544
BbsI	GAAGAC	1 cut(s)	662
BbvCI	CCTCAGC	1 cut(s)	357
BccI	CCATC	3 cut(s)	466, 589, 683
BceAI	ACGGC	2 cut(s)	368, 678
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	252, 547, 933, 986
BfaI	CTAG	2 cut(s)	107, 488
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	3 cut(s)	266, 305, 845
BmgT120I	GGNCC	4 cut(s)	261, 266, 305, 845
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	736
BpiI	GAAGAC	1 cut(s)	662
Bpu10I	CCTNAGC	2 cut(s)	357, 891
BpuMI	CCSGG	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	933, 986
BsaJI	CCNNGG	2 cut(s)	178, 500
BsaWI	WCCGGW	3 cut(s)	64, 70, 115
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 568, 810
Bse118I	RCCGGY	2 cut(s)	64, 263
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	872
BseAI	TCCGGA	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	178, 500
BseLI	CCNNNNNNNGG	3 cut(s)	418, 568, 810
BseMI	GCAATG	1 cut(s)	872
BseMII	CTCAG	7 cut(s)	257, 371, 503, 515, 542, 654, 882
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	5 cut(s)	164, 329, 332, 355, 440
BshFI	GGCC	1 cut(s)	263
BshTI	ACCGGT	1 cut(s)	64
BsiSI	CCGG	6 cut(s)	65, 71, 116, 259, 264, 569
BsiWI	CGTACG	1 cut(s)	279
BslFI	GGGAC	3 cut(s)	518, 692, 872
BslI	CCNNNNNNNGG	3 cut(s)	418, 568, 810
BsmAI	GTCTC	4 cut(s)	252, 547, 933, 986
BsmFI	GGGAC	3 cut(s)	518, 692, 872
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	2 cut(s)	933, 986
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	5 cut(s)	112, 650, 715, 815, 864
BspACI	CCGC	7 cut(s)	381, 572, 575, 587, 665, 843, 848
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	7 cut(s)	256, 370, 504, 516, 543, 653, 883
BspEI	TCCGGA	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	107
BspQI	GCTCTTC	1 cut(s)	756
BspTNI	GGTCTC	2 cut(s)	933, 986
BsrDI	GCAATG	1 cut(s)	872
BsrFI	RCCGGY	2 cut(s)	64, 263
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	2 cut(s)	64, 263
BssECI	CCNNGG	2 cut(s)	178, 500
BssMI	GATC	5 cut(s)	112, 650, 715, 815, 864
BssSI	CACGAG	1 cut(s)	544
BssT1I	CCWWGG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	544
Bst4CI	ACNGT	3 cut(s)	279, 284, 314
Bst6I	CTCTTC	5 cut(s)	530, 576, 727, 756, 1005
BstC8I	GCNNGC	2 cut(s)	145, 239
BstDSI	CCRYGG	1 cut(s)	178
BstKTI	GATC	5 cut(s)	115, 653, 718, 818, 867
BstMAI	GTCTC	4 cut(s)	252, 547, 933, 986
BstMBI	GATC	5 cut(s)	112, 650, 715, 815, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	145, 239
CciI	TCATGA	1 cut(s)	198
Cfr10I	RCCGGY	2 cut(s)	64, 263
Cfr13I	GGNCC	4 cut(s)	261, 266, 305, 845
CpoI	CGGWCCG	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	280, 430, 457
CspAI	ACCGGT	1 cut(s)	64
CspI	CGGWCCG	1 cut(s)	845
CviAII	CATG	3 cut(s)	199, 433, 879
CviQI	GTAC	3 cut(s)	280, 430, 457
DpnI	GATC	5 cut(s)	114, 652, 717, 817, 866
DpnII	GATC	5 cut(s)	112, 650, 715, 815, 864
Eam1104I	CTCTTC	5 cut(s)	530, 576, 727, 756, 1005
EarI	CTCTTC	5 cut(s)	530, 576, 727, 756, 1005
EciI	GGCGGA	4 cut(s)	370, 590, 602, 858
Eco130I	CCWWGG	1 cut(s)	500
Eco31I	GGTCTC	2 cut(s)	933, 986
Eco47I	GGWCC	3 cut(s)	266, 305, 845
Eco57I	CTGAAG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	917
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	3 cut(s)	202, 436, 882
FaqI	GGGAC	3 cut(s)	518, 692, 872
FatI	CATG	3 cut(s)	198, 432, 878
FauI	CCCGC	1 cut(s)	658
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	2 cut(s)	107, 488
GluI	GCNGC	1 cut(s)	573
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	6 cut(s)	65, 71, 116, 259, 264, 569
Hin1II	CATG	3 cut(s)	202, 436, 882
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	5 cut(s)	132, 183, 202, 416, 542
HpaII	CCGG	6 cut(s)	65, 71, 116, 259, 264, 569
HphI	GGTGA	3 cut(s)	326, 610, 977
Hpy166II	GTNNAC	3 cut(s)	103, 175, 269
Hpy188I	TCNGA	2 cut(s)	188, 513
Hpy188III	TCNNGA	4 cut(s)	116, 199, 713, 778
Hpy8I	GTNNAC	3 cut(s)	103, 175, 269
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	430, 595
HpyCH4III	ACNGT	3 cut(s)	279, 284, 314
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	202, 436, 882
Kpn2I	TCCGGA	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	112, 650, 715, 815, 864
LguI	GCTCTTC	1 cut(s)	756
LweI	GCATC	1 cut(s)	736
MaeI	CTAG	2 cut(s)	107, 488
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	22, 314, 539
MalI	GATC	5 cut(s)	114, 652, 717, 817, 866
MboI	GATC	5 cut(s)	112, 650, 715, 815, 864
MflI	RGATCY	1 cut(s)	650
MluCI	AATT	2 cut(s)	405, 917
MlyI	GAGTC	4 cut(s)	192, 196, 425, 536
MmeI	TCCRAC	4 cut(s)	211, 305, 447, 721
MroI	TCCGGA	1 cut(s)	115
MseI	TTAA	4 cut(s)	252, 444, 735, 786
MslI	CAYNNNNRTG	1 cut(s)	877
MspI	CCGG	6 cut(s)	65, 71, 116, 259, 264, 569
MspR9I	CCNGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	5 cut(s)	112, 650, 715, 815, 864
NlaIII	CATG	3 cut(s)	202, 436, 882
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	3 cut(s)	22, 314, 539
PagI	TCATGA	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	132
Pfl23II	CGTACG	1 cut(s)	279
PflFI	GACNNNGTC	1 cut(s)	978
PinAI	ACCGGT	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	4 cut(s)	191, 196, 424, 536
PpsI	GAGTC	4 cut(s)	191, 196, 424, 536
PshBI	ATTAAT	1 cut(s)	735
PspLI	CGTACG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	4 cut(s)	261, 266, 305, 845
PsuI	RGATCY	1 cut(s)	650
PsyI	GACNNNGTC	1 cut(s)	978
RsaI	GTAC	3 cut(s)	281, 431, 458
RsaNI	GTAC	3 cut(s)	280, 430, 457
RseI	CAYNNNNRTG	1 cut(s)	877
Rsr2I	CGGWCCG	1 cut(s)	845
RsrII	CGGWCCG	1 cut(s)	845
SapI	GCTCTTC	1 cut(s)	756
SaqAI	TTAA	4 cut(s)	252, 444, 735, 786
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	5 cut(s)	112, 650, 715, 815, 864
Sau96I	GGNCC	4 cut(s)	261, 266, 305, 845
SchI	GAGTC	4 cut(s)	192, 196, 425, 536
ScrFI	CCNGG	1 cut(s)	260
SfaNI	GCATC	1 cut(s)	736
SinI	GGWCC	3 cut(s)	266, 305, 845
SmiMI	CAYNNNNRTG	1 cut(s)	877
Sse9I	AATT	2 cut(s)	405, 917
SsiI	CCGC	7 cut(s)	381, 572, 575, 587, 665, 843, 848
SspMI	CTAG	2 cut(s)	107, 488
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	3 cut(s)	279, 284, 314
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	818
TasI	AATT	2 cut(s)	405, 917
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	4 cut(s)	252, 444, 735, 786
Tru9I	TTAA	4 cut(s)	252, 444, 735, 786
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	3 cut(s)	22, 314, 539
Tsp45I	GTSAC	3 cut(s)	22, 314, 539
TspDTI	ATGAA	2 cut(s)	449, 721
TspGWI	ACGGA	4 cut(s)	195, 313, 380, 401
TspRI	CASTG	1 cut(s)	648
Tth111I	GACNNNGTC	1 cut(s)	978
VpaK11BI	GGWCC	3 cut(s)	266, 305, 845
VspI	ATTAAT	1 cut(s)	735
XapI	RAATTY	2 cut(s)	405, 917
XspI	CTAG	2 cut(s)	107, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.