Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013952

Physical Location & Seq

Genomic Coordinates Reverse (-)

41773566 .. 41775201

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1283800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTGGTTCTGTCACAACCAGCTGCATTAGACCATTTTTCTGACCTAATCAAAACATGCAAGCCCACCGGCCTGTTCGCCGGCATCCCAGTCGTAGACCTTTCGAGGCCTGACGCAAAGCACCGCATAGTCAGGGCCTGTGAGGAGTACGGTATGTTCAAGGTGATCAACCATGGAGTCCCATTGGACTTCATGACCACTCTGGAAGCCCAAGCTCTCAAATTTTTCAGCCTGCCTCAGTCGGAGAAGGACAAGGCTGGCCCCGCCGACCCTTGCGGCTACGGCAGCAAGAGAATCGGTCCAAACGGCGACGTGGGTTGGATTGAATATATCCTCCTCAACACCAATCCTAAAATCACATCTCACAAGTCCCTCTCCATTCTAAAGGAAAACCCTGAAATTTTCTGTGTTGCAGTTGAAGATTATATTACGGCAGTGAAGAACATGACTTTTGCAGTGCTCGAAATGGTAGCTGATGGGCTGGGGATTGAGCAAAGGAATGTGCTGAGTAAGCTCTTGACAGATGAGAAGAGTGACTCGTGTTTCAGGCTAAACTACTATCCGCCATGTCCAGAGCTTCAGGCATTGAGTGGACGAAATTTGATAGGGTTTGGGGAGCACACAGACCCCCAGATTGTTTCTGTCCTGAAATCCAACAACACATCAGGCCTGCAGATCTGTCTCAAGGATGGGACTTGGGTCACAGTAGCACCTGATCAGACTGCCTTTTTCATCAATGTTGGTGATTGCTTGCAGGTGATGACTAATGGGCGGTTTAAGAGTGTGAAACATAGGGTTTTGGCTGACACAGTTAGTTCAAGGATTTCAATGATCTACTTTGGAGGGCCACCTTTGAGTGAGAAGATAGCACCTCTGCCGTCACTAATGGCAGAAGGAGAAGAGAGCTTGTACAAGGAGTTCACGTGGAGTGAATACAAAAAGTCTGCGTACAGGTCAAGGCTGGCTGATTACAGGCTAGGACTCTTTGAGAAGTCTGCTCCTGTGATGCTGTCCAATTCCCAACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

37.87

Weight (kDa)

6.61

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	29 - 116	9.5e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	179 - 281	3.2e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30040 AT1G30040
fragaria_vesca	FvH4_3g05530
malus_domestica	MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica	Prupe.4G080700_v2.0.a1
pyrus_communis	pycom05g26290
rosa_chinensis	RchiOBHm_Chr5g0014211
rosa_laevigata	RLG00000032090
rosa_multiflora	Rmu_ssc0000120.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062380
rosa_rugosa	Rorug05G0016200
rosa_samantha	Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana	Rw5G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	5 cut(s)	124, 264, 276, 563, 772
AclI	AACGTT	1 cut(s)	1024
AcsI	RAATTY	3 cut(s)	221, 399, 598
AcuI	CTGAAG	1 cut(s)	563
AcvI	CACGTG	1 cut(s)	924
AfaI	GTAC	3 cut(s)	149, 911, 950
AgsI	TTSAA	5 cut(s)	160, 326, 419, 819, 828
AjiI	CACGTC	1 cut(s)	313
AluBI	AGCT	6 cut(s)	23, 215, 473, 514, 577, 906
AluI	AGCT	6 cut(s)	23, 215, 473, 514, 577, 906
Alw21I	GWGCWC	2 cut(s)	462, 621
Alw26I	GTCTC	1 cut(s)	686
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	6 cut(s)	70, 107, 135, 259, 667, 845
ApeKI	GCWGC	2 cut(s)	23, 285
ApoI	RAATTY	3 cut(s)	221, 399, 598
AspS9I	GGNCC	4 cut(s)	135, 260, 299, 845
AsuHPI	GGTGA	3 cut(s)	175, 755, 769
AvaII	GGWCC	1 cut(s)	299
BauI	CACGAG	1 cut(s)	538
BbrPI	CACGTG	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	462, 621
BbvI	GCAGC	2 cut(s)	10, 297
BccI	CCATC	2 cut(s)	470, 683
BceAI	ACGGC	4 cut(s)	298, 322, 447, 862
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 277, 311
BclI	TGATCA	2 cut(s)	165, 715
BcoDI	GTCTC	1 cut(s)	686
BfaI	CTAG	1 cut(s)	977
BfmI	CTRYAG	1 cut(s)	671
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	675
BisI	GCNGC	3 cut(s)	24, 277, 286
BlsI	GCNGC	3 cut(s)	25, 278, 287
Bme18I	GGWCC	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	135, 260, 299, 845
BmiI	GGNNCC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	93, 996
BmuI	ACTGGG	1 cut(s)	83
BoxI	GACNNNNGTC	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	668
BsaAI	YACGTR	1 cut(s)	924
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	908, 938
Bse118I	RCCGGY	2 cut(s)	68, 80
Bse1I	ACTGG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	84, 694
BseMII	CTCAG	2 cut(s)	251, 497
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	158, 326
BseXI	GCAGC	2 cut(s)	10, 297
BseYI	CCCAGC	1 cut(s)	481
BshFI	GGCC	6 cut(s)	72, 109, 137, 261, 669, 847
BsiHKAI	GWGCWC	2 cut(s)	462, 621
BsiSI	CCGG	2 cut(s)	69, 81
BslFI	GGGAC	3 cut(s)	164, 355, 706
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	3 cut(s)	164, 355, 706
BsnI	GGCC	6 cut(s)	72, 109, 137, 261, 669, 847
Bsp1286I	GDGCHC	2 cut(s)	462, 621
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	4 cut(s)	165, 675, 715, 831
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	5 cut(s)	124, 264, 276, 563, 772
BspANI	GGCC	6 cut(s)	72, 109, 137, 261, 669, 847
BspCNI	CTCAG	2 cut(s)	250, 498
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	745
BsrFI	RCCGGY	2 cut(s)	68, 80
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	1 cut(s)	89
BssAI	RCCGGY	2 cut(s)	68, 80
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	4 cut(s)	165, 675, 715, 831
BssSI	CACGAG	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	538
Bst4CI	ACNGT	3 cut(s)	152, 706, 811
Bst6I	CTCTTC	2 cut(s)	524, 894
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	1 cut(s)	924
BstC8I	GCNNGC	7 cut(s)	62, 82, 233, 259, 671, 752, 963
BstDEI	CTNAG	2 cut(s)	237, 506
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	2 cut(s)	84, 694
BstKTI	GATC	4 cut(s)	168, 678, 718, 834
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	4 cut(s)	165, 675, 715, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 282, 285, 511
BstNSI	RCATGY	1 cut(s)	60
BstPAI	GACNNNNGTC	1 cut(s)	698
BstSFI	CTRYAG	1 cut(s)	671
BstV1I	GCAGC	2 cut(s)	10, 297
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	6 cut(s)	72, 109, 137, 261, 669, 847
BtgI	CCRYGG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	84, 694
BtsI	GCAGTG	2 cut(s)	441, 462
BtsIMutI	CAGTG	2 cut(s)	441, 462
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	7 cut(s)	62, 82, 233, 259, 671, 752, 963
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	192
Cfr10I	RCCGGY	2 cut(s)	68, 80
Cfr13I	GGNCC	4 cut(s)	135, 260, 299, 845
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	3 cut(s)	148, 910, 949
CviAII	CATG	5 cut(s)	57, 173, 193, 445, 567
CviQI	GTAC	3 cut(s)	148, 910, 949
DdeI	CTNAG	2 cut(s)	237, 506
DpnI	GATC	4 cut(s)	167, 677, 717, 833
DpnII	GATC	4 cut(s)	165, 675, 715, 831
Eam1104I	CTCTTC	2 cut(s)	524, 894
EarI	CTCTTC	2 cut(s)	524, 894
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	2 cut(s)	109, 669
Eco47I	GGWCC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	60, 176, 196, 448, 570
FaqI	GGGAC	3 cut(s)	164, 355, 706
FatI	CATG	5 cut(s)	56, 172, 192, 444, 566
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	2 cut(s)	165, 715
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	24, 277, 286
FokI	GGATG	2 cut(s)	71, 701
Fsp4HI	GCNGC	3 cut(s)	24, 277, 286
FspBI	CTAG	1 cut(s)	977
GluI	GCNGC	3 cut(s)	24, 277, 286
GsaI	CCCAGC	1 cut(s)	485
HaeIII	GGCC	6 cut(s)	72, 109, 137, 261, 669, 847
HapII	CCGG	2 cut(s)	69, 81
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	5 cut(s)	60, 176, 196, 448, 570
HinfI	GANTC	4 cut(s)	177, 294, 536, 981
HpaII	CCGG	2 cut(s)	69, 81
HphI	GGTGA	3 cut(s)	175, 755, 769
Hpy166II	GTNNAC	3 cut(s)	97, 593, 921
Hpy188I	TCNGA	3 cut(s)	43, 244, 720
Hpy188III	TCNNGA	5 cut(s)	193, 203, 517, 572, 646
Hpy8I	GTNNAC	3 cut(s)	97, 593, 921
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	241, 887
HpyCH4III	ACNGT	3 cut(s)	152, 706, 811
HpyCH4IV	ACGT	3 cut(s)	312, 923, 1024
HpyCH4V	TGCA	6 cut(s)	26, 60, 413, 455, 673, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 282, 285, 511
HpyF3I	CTNAG	2 cut(s)	237, 506
HpySE526I	ACGT	3 cut(s)	312, 923, 1024
Hsp92II	CATG	5 cut(s)	60, 176, 196, 448, 570
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	165, 715
Kzo9I	GATC	4 cut(s)	165, 675, 715, 831
LmnI	GCTCC	2 cut(s)	616, 1003
Lsp1109I	GCAGC	2 cut(s)	10, 297
LweI	GCATC	2 cut(s)	93, 996
MaeI	CTAG	1 cut(s)	977
MaeII	ACGT	3 cut(s)	312, 923, 1024
MaeIII	GTNAC	4 cut(s)	12, 533, 700, 879
MalI	GATC	4 cut(s)	167, 677, 717, 833
MboI	GATC	4 cut(s)	165, 675, 715, 831
MboII	GAAGA	5 cut(s)	431, 451, 541, 874, 911
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	2 cut(s)	462, 621
MluCI	AATT	4 cut(s)	221, 399, 598, 1015
MlyI	GAGTC	3 cut(s)	186, 530, 975
MmeI	TCCRAC	3 cut(s)	222, 299, 678
MnlI	CCTC	8 cut(s)	99, 136, 246, 344, 347, 383, 836, 882
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	69, 81
MwoI	GCNNNNNNNGC	4 cut(s)	263, 282, 285, 511
NaeI	GCCGGC	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	4 cut(s)	165, 675, 715, 831
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	5 cut(s)	60, 176, 196, 448, 570
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	4 cut(s)	12, 533, 700, 879
NspI	RCATGY	1 cut(s)	60
PagI	TCATGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	745
PceI	AGGCCT	2 cut(s)	109, 669
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	25, 278, 287
PleI	GAGTC	3 cut(s)	185, 530, 975
PmaCI	CACGTG	1 cut(s)	924
PmlI	CACGTG	1 cut(s)	924
PpsI	GAGTC	3 cut(s)	185, 530, 975
Ppu21I	YACGTR	1 cut(s)	924
PshAI	GACNNNNGTC	1 cut(s)	698
Psp1406I	AACGTT	1 cut(s)	1024
PspCI	CACGTG	1 cut(s)	924
PspFI	CCCAGC	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	4 cut(s)	135, 260, 299, 845
PsrI	GAACNNNNNNTAC	4 cut(s)	140, 172, 902, 934
PstI	CTGCAG	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	3 cut(s)	149, 911, 950
RsaNI	GTAC	3 cut(s)	148, 910, 949
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	3 cut(s)	24, 277, 286
Sau3AI	GATC	4 cut(s)	165, 675, 715, 831
Sau96I	GGNCC	4 cut(s)	135, 260, 299, 845
SchI	GAGTC	3 cut(s)	186, 530, 975
SduI	GDGCHC	2 cut(s)	462, 621
SfaNI	GCATC	2 cut(s)	93, 996
SfcI	CTRYAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	4 cut(s)	221, 399, 598, 1015
SseBI	AGGCCT	2 cut(s)	109, 669
SsiI	CCGC	5 cut(s)	124, 264, 276, 563, 772
SspMI	CTAG	1 cut(s)	977
StuI	AGGCCT	2 cut(s)	109, 669
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	152, 706, 811
TaiI	ACGT	3 cut(s)	315, 926, 1027
TaqI	TCGA	2 cut(s)	104, 462
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	221, 399, 598, 1015
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	2 cut(s)	441, 462
TseFI	GTSAC	4 cut(s)	12, 533, 700, 879
TseI	GCWGC	2 cut(s)	23, 285
Tsp45I	GTSAC	4 cut(s)	12, 533, 700, 879
TspDTI	ATGAA	2 cut(s)	181, 721
TspRI	CASTG	2 cut(s)	441, 462
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	3 cut(s)	221, 399, 598
XceI	RCATGY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.