Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013952

Physical Location & Seq

Genomic Coordinates Reverse (-)

3236511 .. 3238759

Gene Structure 2249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g05530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGTGGTTCAGTCGCAACCAGCTGCATTAGACCATTTCCCACTAATCAAAGCATGCAAGCCCATAAGCATGTTCTCTGGGATTCCAGTGGTAGACCTTTCAGACCCCGATGCCAAGAGCCTAATCATCAAGGCCTGCGAAGAATACGGCTTGTTCAAGGTGGTCAATCATGGAGTCCCATTGGAGTTCATGACTACACTTGAGGCTCAAGCTCTCAAGTTCTTCAACTTACCACAGTCTGAAAAAGACAGAGCAGGCCCTGCCGACCCTTTTGGCTATGGAAGCAAGCGAATCGGTCCAAACGGCGATGTGGGTTGGATTGAATACATCCTCCTCACCGCCAATCCTGAAATCATCTCCCACAAATCACTCTCCATTTTCAAAAACAACCCAGAAATTTTCCGTTCCGCTGTTGAGGATTATCTCTCGGCGGTGAAGAGGATGGCCTGTGAGGTCCTAGAAATGATGGCTGATGGGTTGGGAATCGATCAAAGAAATGCGCTGAGCAAGCTTCTGAGAGATGAGAAGAGTGACTCATGTTTCAGGCTCAACTACTATCCGCCATGCCCGGAGCTTCAAACATTGAGTGGACGAAATGTGATTGGGTTTGGGGAGCACACAGACCCTCAGATAATCTCTGTCCTGAGATCTAACAACACCGCCAGCCTGCAAATCAGCCTGAAAGATGGGACTTGGGTTACTGTCCCACCTGATCAGACTTCTTTTTTCTTCAATGTTGGTGATTGCCTACAGGTGATGACTAACGGGAGGTTCAAGAGCGTGAAGCATAGGGTTTTCGCAGACACAGAGAGGTCAAGGATTTCGATGATTTACTTTGGAGGACCACCTCTGAGTGAAAAGATAACACCTCTAGCGGCAGTGATGGCAGAAGGAGAAGAAAGCTTGTACAAGGAGTTCACGTGGTCCGAGTACAGAAGCTCTGCTTATAAATCACGGCTGGCTGATAATAGGCTACGGCTCTTTGAGAAATCCTTTTGGCAATGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

337

Amino Acids

37.7

Weight (kDa)

6.03

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	28 - 95	2e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	178 - 280	2.2e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30040 AT1G30040
fragaria_vesca	FvH4_3g05530
malus_domestica	MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica	Prupe.4G080700_v2.0.a1
pyrus_communis	pycom05g26290
rosa_chinensis	RchiOBHm_Chr5g0014211
rosa_laevigata	RLG00000032090
rosa_multiflora	Rmu_ssc0000120.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062380
rosa_rugosa	Rorug05G0016200
rosa_samantha	Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana	Rw5G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	6 cut(s)	339, 408, 431, 560, 660, 875
AcsI	RAATTY	1 cut(s)	396
AcvI	CACGTG	1 cut(s)	921
AfaI	GTAC	2 cut(s)	908, 932
AgsI	TTSAA	7 cut(s)	157, 226, 323, 382, 578, 733, 775
AluBI	AGCT	6 cut(s)	23, 212, 511, 574, 903, 939
AluI	AGCT	6 cut(s)	23, 212, 511, 574, 903, 939
Alw21I	GWGCWC	1 cut(s)	618
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	132, 256, 444
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	5 cut(s)	257, 296, 454, 842, 924
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	4 cut(s)	328, 445, 752, 766
AvaII	GGWCC	4 cut(s)	296, 454, 842, 924
BbrPI	CACGTG	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	5 cut(s)	436, 460, 467, 680, 877
BceAI	ACGGC	4 cut(s)	163, 319, 971, 992
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	569
BfaI	CTAG	2 cut(s)	458, 872
BfmI	CTRYAG	1 cut(s)	749
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	2 cut(s)	24, 876
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	2 cut(s)	25, 877
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	4 cut(s)	296, 454, 842, 924
BmgT120I	GGNCC	5 cut(s)	257, 296, 454, 842, 924
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuEI	CTTGAG	3 cut(s)	192, 200, 221
BpuMI	CCSGG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	921
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bse1I	ACTGG	2 cut(s)	86, 1006
Bse3DI	GCAATG	1 cut(s)	1007
BseCI	ATCGAT	1 cut(s)	486
BseGI	GGATG	2 cut(s)	327, 447
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	5 cut(s)	494, 506, 635, 641, 842
BseNI	ACTGG	2 cut(s)	86, 1006
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	3 cut(s)	134, 258, 446
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	3 cut(s)	161, 689, 703
BsmFI	GGGAC	3 cut(s)	161, 689, 703
BsnI	GGCC	3 cut(s)	134, 258, 446
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	3 cut(s)	487, 647, 712
Bsp1720I	GCTNAGC	1 cut(s)	503
BspACI	CCGC	6 cut(s)	339, 408, 431, 560, 660, 875
BspANI	GGCC	3 cut(s)	134, 258, 446
BspCNI	CTCAG	5 cut(s)	495, 507, 636, 640, 843
BspDI	ATCGAT	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	1007
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	2 cut(s)	86, 1006
BssMI	GATC	3 cut(s)	487, 647, 712
Bst4CI	ACNGT	2 cut(s)	237, 703
Bst6I	CTCTTC	2 cut(s)	431, 521
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	906
BstBAI	YACGTR	1 cut(s)	921
BstC8I	GCNNGC	9 cut(s)	55, 59, 136, 256, 287, 509, 664, 668, 960
BstDEI	CTNAG	5 cut(s)	503, 515, 627, 644, 851
BstF5I	GGATG	2 cut(s)	327, 447
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	490, 650, 715
BstMBI	GATC	3 cut(s)	487, 647, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	260, 282, 508, 884
BstNSI	RCATGY	2 cut(s)	57, 73
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	749
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	134, 258, 446
BsuTUI	ATCGAT	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	327, 447
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	2 cut(s)	93, 885
Cac8I	GCNNGC	9 cut(s)	55, 59, 136, 256, 287, 509, 664, 668, 960
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	5 cut(s)	257, 296, 454, 842, 924
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	907, 931
CviAII	CATG	6 cut(s)	54, 70, 170, 190, 537, 564
CviQI	GTAC	2 cut(s)	907, 931
DdeI	CTNAG	5 cut(s)	503, 515, 627, 644, 851
DpnI	GATC	3 cut(s)	489, 649, 714
DpnII	GATC	3 cut(s)	487, 647, 712
Eam1104I	CTCTTC	2 cut(s)	431, 521
EarI	CTCTTC	2 cut(s)	431, 521
EciI	GGCGGA	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	134
Eco47I	GGWCC	4 cut(s)	296, 454, 842, 924
Eco72I	CACGTG	1 cut(s)	921
EcoO109I	RGGNCCY	2 cut(s)	257, 454
FaeI	CATG	6 cut(s)	57, 73, 173, 193, 540, 567
FalI	AAGNNNNNCTT	2 cut(s)	928, 960
FaqI	GGGAC	3 cut(s)	161, 689, 703
FatI	CATG	6 cut(s)	53, 69, 169, 189, 536, 563
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	24, 876
FokI	GGATG	2 cut(s)	314, 454
Fsp4HI	GCNGC	2 cut(s)	24, 876
FspBI	CTAG	2 cut(s)	458, 872
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	2 cut(s)	24, 876
HaeIII	GGCC	3 cut(s)	134, 258, 446
HapII	CCGG	1 cut(s)	569
HhaI	GCGC	1 cut(s)	502
Hin1II	CATG	6 cut(s)	57, 73, 173, 193, 540, 567
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HindIII	AAGCTT	2 cut(s)	509, 901
HinfI	GANTC	5 cut(s)	82, 174, 291, 483, 533
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	4 cut(s)	328, 445, 752, 766
Hpy166II	GTNNAC	3 cut(s)	94, 590, 918
Hpy188I	TCNGA	7 cut(s)	103, 241, 516, 630, 717, 852, 928
Hpy188III	TCNNGA	4 cut(s)	190, 347, 643, 775
Hpy8I	GTNNAC	3 cut(s)	94, 590, 918
HpyAV	CCTTC	1 cut(s)	884
HpyCH4III	ACNGT	2 cut(s)	237, 703
HpyCH4IV	ACGT	1 cut(s)	920
HpyCH4V	TGCA	3 cut(s)	26, 57, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	260, 282, 508, 884
HpyF3I	CTNAG	5 cut(s)	503, 515, 627, 644, 851
HpySE526I	ACGT	1 cut(s)	920
Hsp92II	CATG	6 cut(s)	57, 73, 173, 193, 540, 567
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	487, 647, 712
LmnI	GCTCC	2 cut(s)	571, 613
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	458, 872
MaeII	ACGT	1 cut(s)	920
MaeIII	GTNAC	2 cut(s)	530, 697
MalI	GATC	3 cut(s)	489, 649, 714
MboI	GATC	3 cut(s)	487, 647, 712
MboII	GAAGA	6 cut(s)	152, 214, 448, 538, 721, 908
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	183, 527
MmeI	TCCRAC	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	23, 410
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	4 cut(s)	260, 282, 508, 884
NciI	CCSGG	1 cut(s)	569
NdeII	GATC	3 cut(s)	487, 647, 712
NlaIII	CATG	6 cut(s)	57, 73, 173, 193, 540, 567
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	530
NspI	RCATGY	2 cut(s)	57, 73
PaeI	GCATGC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	82, 291, 483
PkrI	GCNGC	2 cut(s)	25, 877
PleI	GAGTC	2 cut(s)	182, 527
PmaCI	CACGTG	1 cut(s)	921
PmlI	CACGTG	1 cut(s)	921
PpsI	GAGTC	2 cut(s)	182, 527
Ppu21I	YACGTR	1 cut(s)	921
PpuMI	RGGWCCY	1 cut(s)	454
PsiI	TTATAA	1 cut(s)	948
Psp5II	RGGWCCY	1 cut(s)	454
PspCI	CACGTG	1 cut(s)	921
PspPI	GGNCC	5 cut(s)	257, 296, 454, 842, 924
PspPPI	RGGWCCY	1 cut(s)	454
PsrI	GAACNNNNNNTAC	2 cut(s)	899, 931
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	908, 932
RsaNI	GTAC	2 cut(s)	907, 931
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	2 cut(s)	24, 876
Sau3AI	GATC	3 cut(s)	487, 647, 712
Sau96I	GGNCC	5 cut(s)	257, 296, 454, 842, 924
SchI	GAGTC	2 cut(s)	183, 527
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	749
SinI	GGWCC	4 cut(s)	296, 454, 842, 924
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	3 cut(s)	200, 207, 215
SmoI	CTYRAG	3 cut(s)	200, 207, 215
SphI	GCATGC	1 cut(s)	57
Sse9I	AATT	1 cut(s)	396
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	6 cut(s)	339, 408, 431, 560, 660, 875
SspMI	CTAG	2 cut(s)	458, 872
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	237, 703
TaiI	ACGT	1 cut(s)	923
TaqI	TCGA	2 cut(s)	486, 824
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	1 cut(s)	396
TatI	WGTACW	2 cut(s)	906, 930
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	3 cut(s)	82, 291, 483
TscAI	CASTG	2 cut(s)	93, 885
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	93, 885
VpaK11BI	GGWCC	4 cut(s)	296, 454, 842, 924
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	2 cut(s)	57, 73
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	458, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.