Rorug05G0016200

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
1095222 .. 1095503
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0016200.1

Sequence Viewer

Length: 282 bp
ATGGTTGTGGAGGTTTCTATTAGACTTGCGGCTGCGCTGGCTATCACTGACAATGGTTGGGTTTCGTTCGGAGCCTTCGGAGACGTGGCTGTCTTAGGCCACTCCTACATCGTGGGACGGCTACTTGCAGGGAAGAAAAAGCTTGATTTCAAAGATCTTATAGGGACTATGGCTCTGGTATGGGGACTGAAAAATCAGCCCTCGATGAGGGCACAAGAGGATAGGTACGTGCTACGTACGTTTTACAAAGGTGGAGGAAAGGCTGCACATTGTGTCCGGTGA

Protein Analysis

93

Amino Acids

10.13

Weight (kDa)

9.84

Isoelectric Point (pI)

11.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013952)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30040 AT1G30040
fragaria_vesca FvH4_3g05530
malus_domestica MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica Prupe.4G080700_v2.0.a1
pyrus_communis pycom05g26290
rosa_chinensis RchiOBHm_Chr5g0014211
rosa_laevigata RLG00000032090
rosa_multiflora Rmu_ssc0000120.1_g000010
rosa_roxburghii Rroxscaffold_1G00062380
rosa_rugosa Rorug05G0016200
rosa_samantha Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana Rw5G009620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AciI CCGC 1 cut(s) 29
AdeI CACNNNGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 227, 238
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 1 cut(s) 151
AjiI CACGTC 1 cut(s) 85
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 75
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 32, 263
AspLEI GCGC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 19, 250
BceAI ACGGC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 75
BglII AGATCT 1 cut(s) 154
BisI GCNGC 3 cut(s) 30, 33, 264
BlsI GCNGC 3 cut(s) 31, 34, 265
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 73
BsaAI YACGTR 2 cut(s) 229, 236
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 2 cut(s) 19, 250
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 277
BsiWI CGTACG 1 cut(s) 236
BslFI GGGAC 3 cut(s) 129, 178, 198
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 3 cut(s) 129, 178, 198
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 73
BssMI GATC 1 cut(s) 154
BstBAI YACGTR 2 cut(s) 229, 236
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 94
BstENI CCTNNNNNAGG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 214
BstSNI TACGTA 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 19, 250
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 1 cut(s) 99
BtrI CACGTC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 226, 237
CviQI GTAC 2 cut(s) 226, 237
DdeI CTNAG 1 cut(s) 94
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraIII CACNNNGTG 1 cut(s) 272
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Eco105I TACGTA 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 75
FaiI YATR 3 cut(s) 161, 170, 181
FaqI GGGAC 3 cut(s) 129, 178, 198
Fnu4HI GCNGC 3 cut(s) 30, 33, 264
Fsp4HI GCNGC 3 cut(s) 30, 33, 264
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 30, 33, 264
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 277
HhaI GCGC 1 cut(s) 37
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HindIII AAGCTT 1 cut(s) 140
HpaII CCGG 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 71, 80
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 4 cut(s) 84, 228, 235, 239
HpyCH4V TGCA 2 cut(s) 128, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 94
HpySE526I ACGT 4 cut(s) 84, 228, 235, 239
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 23, 114, 161
Lsp1109I GCAGC 2 cut(s) 19, 250
MaeII ACGT 4 cut(s) 84, 228, 235, 239
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 145
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 214
MnlI CCTC 5 cut(s) 4, 201, 211, 211, 248
MspI CCGG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 73
Pfl23II CGTACG 1 cut(s) 236
PkrI GCNGC 3 cut(s) 31, 34, 265
Ppu21I YACGTR 2 cut(s) 229, 236
PspLI CGTACG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 2 cut(s) 227, 238
RsaNI GTAC 2 cut(s) 226, 237
SatI GCNGC 3 cut(s) 30, 33, 264
Sau3AI GATC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 214
SetI ASST 8 cut(s) 15, 87, 144, 227, 231, 238, 242, 253
SnaBI TACGTA 1 cut(s) 236
SsiI CCGC 1 cut(s) 29
TaiI ACGT 4 cut(s) 87, 231, 238, 242
TaqI TCGA 1 cut(s) 203
TauI GCSGC 1 cut(s) 32
TscAI CASTG 1 cut(s) 52
TseI GCWGC 2 cut(s) 32, 263
TspRI CASTG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.