Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013952

Physical Location & Seq

Genomic Coordinates Forward (+)

10379237 .. 10381025

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G009620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGTGGTTCTGTCTCAACCAGCTGCATTAAACCATTTCTCTCTAATCAAATCATGCAAGCCAACAAGCTTGTTCTCTGGGATTCCAGTGGTAGACCTCTCAGACCCAGATGCCAAGAGCCAAATCATCAAGGCCTGCAAAGAGTACGGCTTGTTCAAGGTGGTCAACCATGGAGTCCCATTGGAGTTCATGACCACACTTGAGGCTCAAGCTCTCAAGTTCTTCAACTTGCCACAGTCTGAAAAAGACAGGGCCGGCCCTGCTGACCCTTTTGGTTACGGAAGCAAGCGAATCGGGCCAAACGGCGACGTGGGTTGGATTGAATACATCCTCCTCAACGCCAATCCTGAAATTATCTCCCACAAATCACACTCCATTTTCAAAAACAACCCAGAAATTTTCCGTTCTGCTGTTGAGGACTATATCTCGGCGGTGAAGAAGATGACTTGTGAGGTACTAGAAATGGTGGCTGAAGCGTTGGGAATCGATCAAAGAAATGCGCTGAGCAAGCTTCTGAGAGATGAGAAGAGTGACTCATGTTTCAGGCTCAACTACTATCCGCCGTGCCCGGAGCTTCAAGCATTGAGTGGACGGAATTTGATTGGGTTTGGAGAGCACACAGACCCCCAGATAATCTCTGTCCTAAGATCTAACAACACCGCAAGCCTGCAAATCAGTCTGAAAGATGGGACTTGGGTTTCTGTCCCACCTGATCAGACTTCCTTTTTCATTAATGTTGGTGATTGCCTACAGGTGATGACTAATGGGAGGTTTAAGAGCGTGAAGCATAGGGTTTTGGCAGACACAGTAAGCTCAAGGATTTCGATGATTTACTTTGGAGGGCCACCTCTGAATGAAAAGATAACACCTCTGGCGTCAGTAATGGCAGAAGGAGAAGAAAGCTTGTACAAGGAGTTCACGTGGTCCGAGTACAAAGAGTCTGCATATAAATCACGGTTGGCTGATTATCGGCTAGGGCTCTTTGAGAAATCCTTTGGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

334

Amino Acids

37.16

Weight (kDa)

6.34

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	28 - 96	2e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	178 - 280	1.5e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30040 AT1G30040
fragaria_vesca	FvH4_3g05530
malus_domestica	MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica	Prupe.4G080700_v2.0.a1
pyrus_communis	pycom05g26290
rosa_chinensis	RchiOBHm_Chr5g0014211
rosa_laevigata	RLG00000032090
rosa_multiflora	Rmu_ssc0000120.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062380
rosa_rugosa	Rorug05G0016200
rosa_samantha	Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana	Rw5G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	3 cut(s)	431, 560, 660
AcoI	YGGCCR	1 cut(s)	997
AcsI	RAATTY	2 cut(s)	396, 595
AcuI	CTGAAG	1 cut(s)	492
AcvI	CACGTG	1 cut(s)	921
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	4 cut(s)	146, 456, 908, 932
AgsI	TTSAA	5 cut(s)	157, 226, 323, 382, 578
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	7 cut(s)	23, 69, 212, 511, 574, 813, 903
AluI	AGCT	7 cut(s)	23, 69, 212, 511, 574, 813, 903
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	18
AoxI	GGCC	6 cut(s)	132, 252, 256, 296, 842, 997
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	2 cut(s)	396, 595
AseI	ATTAAT	1 cut(s)	732
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	5 cut(s)	252, 257, 296, 842, 924
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	445, 752, 766
AvaII	GGWCC	1 cut(s)	924
BaeGI	GKGCMC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	999
BanII	GRGCYC	1 cut(s)	981
BbrPI	CACGTG	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	680
BceAI	ACGGC	3 cut(s)	163, 319, 547
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	569
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	458, 974
BfmI	CTRYAG	1 cut(s)	749
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	569
Bme18I	GGWCC	1 cut(s)	924
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	5 cut(s)	252, 257, 296, 842, 924
BmrFI	CCNGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	100
Bpu1102I	GCTNAGC	1 cut(s)	503
BpuEI	CTTGAG	4 cut(s)	192, 200, 221, 799
BpuMI	CCSGG	1 cut(s)	569
Bsa29I	ATCGAT	1 cut(s)	486
BsaAI	YACGTR	1 cut(s)	921
BsaHI	GRCGYC	1 cut(s)	875
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	3 cut(s)	114, 494, 506
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	569
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	6 cut(s)	134, 254, 258, 298, 844, 999
BshVI	ATCGAT	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	2 cut(s)	255, 569
BslFI	GGGAC	3 cut(s)	161, 689, 703
BsmAI	GTCTC	1 cut(s)	18
BsmFI	GGGAC	3 cut(s)	161, 689, 703
BsnI	GGCC	6 cut(s)	134, 254, 258, 298, 844, 999
Bsp1286I	GDGCHC	3 cut(s)	569, 618, 981
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	3 cut(s)	487, 647, 712
Bsp1720I	GCTNAGC	1 cut(s)	503
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	3 cut(s)	431, 560, 660
BspANI	GGCC	6 cut(s)	134, 254, 258, 298, 844, 999
BspCNI	CTCAG	3 cut(s)	113, 495, 507
BspDI	ATCGAT	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	487, 647, 712
BssNI	GRCGYC	1 cut(s)	875
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	237, 808, 957
Bst6I	CTCTTC	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	875
BstAUI	TGTACA	1 cut(s)	906
BstBAI	YACGTR	1 cut(s)	921
BstC8I	GCNNGC	7 cut(s)	59, 136, 256, 287, 509, 664, 668
BstDEI	CTNAG	4 cut(s)	100, 503, 515, 644
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	502
BstKTI	GATC	3 cut(s)	490, 650, 715
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	487, 647, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 295, 508
BstSCI	CCNGG	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	749
BstSLI	GKGCMC	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	6 cut(s)	134, 254, 258, 298, 844, 999
BsuTUI	ATCGAT	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	7 cut(s)	59, 136, 256, 287, 509, 664, 668
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	5 cut(s)	252, 257, 296, 842, 924
ClaI	ATCGAT	1 cut(s)	486
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	4 cut(s)	145, 455, 907, 931
CviAII	CATG	4 cut(s)	54, 170, 190, 537
CviQI	GTAC	4 cut(s)	145, 455, 907, 931
DdeI	CTNAG	4 cut(s)	100, 503, 515, 644
DpnI	GATC	3 cut(s)	489, 649, 714
DpnII	GATC	3 cut(s)	487, 647, 712
EaeI	YGGCCR	1 cut(s)	997
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
EciI	GGCGGA	1 cut(s)	549
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	924
Eco57I	CTGAAG	1 cut(s)	492
Eco72I	CACGTG	1 cut(s)	921
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	4 cut(s)	57, 173, 193, 540
FaiI	YATR	8 cut(s)	55, 171, 191, 423, 538, 789, 946, 948
FaqI	GGGAC	3 cut(s)	161, 689, 703
FatI	CATG	4 cut(s)	53, 169, 189, 536
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	981
FseI	GGCCGGCC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	458, 974
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	6 cut(s)	134, 254, 258, 298, 844, 999
HapII	CCGG	2 cut(s)	255, 569
HgaI	GACGC	1 cut(s)	864
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	4 cut(s)	57, 173, 193, 540
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HindIII	AAGCTT	3 cut(s)	67, 509, 901
HinfI	GANTC	6 cut(s)	82, 174, 291, 483, 533, 938
HpaII	CCGG	2 cut(s)	255, 569
HphI	GGTGA	3 cut(s)	445, 752, 766
Hpy166II	GTNNAC	4 cut(s)	94, 166, 590, 918
Hpy188I	TCNGA	7 cut(s)	103, 241, 516, 681, 717, 852, 928
Hpy188III	TCNNGA	2 cut(s)	190, 347
Hpy8I	GTNNAC	4 cut(s)	94, 166, 590, 918
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	1 cut(s)	884
HpyCH4III	ACNGT	3 cut(s)	237, 808, 957
HpyCH4IV	ACGT	2 cut(s)	309, 920
HpyCH4V	TGCA	5 cut(s)	26, 57, 138, 670, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 295, 508
HpyF3I	CTNAG	4 cut(s)	100, 503, 515, 644
HpySE526I	ACGT	2 cut(s)	309, 920
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	4 cut(s)	57, 173, 193, 540
HspAI	GCGC	1 cut(s)	500
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	487, 647, 712
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	458, 974
MaeII	ACGT	2 cut(s)	309, 920
MaeIII	GTNAC	2 cut(s)	275, 530
MalI	GATC	3 cut(s)	489, 649, 714
MboI	GATC	3 cut(s)	487, 647, 712
MboII	GAAGA	5 cut(s)	214, 448, 451, 538, 908
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	569, 618, 981
MlsI	TGGCCA	1 cut(s)	999
MluCI	AATT	3 cut(s)	351, 396, 595
MluNI	TGGCCA	1 cut(s)	999
MlyI	GAGTC	3 cut(s)	183, 527, 947
MmeI	TCCRAC	1 cut(s)	296
Mox20I	TGGCCA	1 cut(s)	999
MroNI	GCCGGC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	999
MseI	TTAA	3 cut(s)	29, 732, 774
Msp20I	TGGCCA	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	255, 569
MspR9I	CCNGG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	260, 295, 508
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	569
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	3 cut(s)	487, 647, 712
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	4 cut(s)	57, 173, 193, 540
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	1 cut(s)	530
PagI	TCATGA	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	134
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	82, 291, 483
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	3 cut(s)	182, 527, 946
PmaCI	CACGTG	1 cut(s)	921
PmlI	CACGTG	1 cut(s)	921
PpsI	GAGTC	3 cut(s)	182, 527, 946
Ppu21I	YACGTR	1 cut(s)	921
PshBI	ATTAAT	1 cut(s)	732
PspCI	CACGTG	1 cut(s)	921
PspPI	GGNCC	5 cut(s)	252, 257, 296, 842, 924
PsrI	GAACNNNNNNTAC	4 cut(s)	137, 169, 899, 931
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	23
RigI	GGCCGGCC	1 cut(s)	258
RsaI	GTAC	4 cut(s)	146, 456, 908, 932
RsaNI	GTAC	4 cut(s)	145, 455, 907, 931
SaqAI	TTAA	3 cut(s)	29, 732, 774
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	3 cut(s)	487, 647, 712
Sau96I	GGNCC	5 cut(s)	252, 257, 296, 842, 924
SchI	GAGTC	3 cut(s)	183, 527, 947
ScrFI	CCNGG	1 cut(s)	569
SduI	GDGCHC	3 cut(s)	569, 618, 981
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	749
SinI	GGWCC	1 cut(s)	924
SmlI	CTYRAG	4 cut(s)	200, 207, 215, 814
SmoI	CTYRAG	4 cut(s)	200, 207, 215, 814
Sse9I	AATT	3 cut(s)	351, 396, 595
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	431, 560, 660
SspMI	CTAG	2 cut(s)	458, 974
StuI	AGGCCT	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	567
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	237, 808, 957
TaiI	ACGT	2 cut(s)	312, 923
TaqI	TCGA	2 cut(s)	486, 824
TasI	AATT	3 cut(s)	351, 396, 595
TatI	WGTACW	2 cut(s)	906, 930
TfiI	GAWTC	3 cut(s)	82, 291, 483
Tru1I	TTAA	3 cut(s)	29, 732, 774
Tru9I	TTAA	3 cut(s)	29, 732, 774
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	178, 718, 870
TspGWI	ACGGA	3 cut(s)	294, 392, 607
TspRI	CASTG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	924
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	2 cut(s)	396, 595
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	458, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.