Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013952

Physical Location & Seq

Genomic Coordinates Forward (+)

3917455 .. 3919603

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGGTTCTTTCTCAACCCGCGGCATTAGACCATTTATCTGATCTGATCAAAGCGTGCAAGCCCACCAGCTTGTTCACTGGAATTCCAGTCGTGGACCTCTCAGACCCTGAAGCAAAACACCACATAGTCAAGGCCTGTCAAGACTACGGCTTGTTCAAGCTGGTCAACCATGGAGTGCCATTGGACTTCATGACCACGCTTGAAGCCCAAGCTCTCAAATTCTTTAACTTACCCCAGTCAGAGAAAGAGAAGGCAGGCCCTGCCGATCCATTCGGCTACGGAAGCAAGAGAATTGGCCCAAACGGTGACGTGGGTTGGATTGAATACATCCTTCTCAACACCAATCCTGATATCATCTACCCCAAGTCCCTCTCCATTTTCAAAGAAAACCCAGAAATTTTCCGTGATGCAGTGTTAGATTATATCTGCGCGGTGAAGAAGATGACCTTTGAGGTATTGGAATTGATGGTTGATGGGCTGGGGATTGAGCCAAGGAATGCGCTGAGCAATCTTTTGAGAGAGGATAAGAGCGACTGTTGCTTCAGGCTAAACTACTATCCGCCATGCCCAGAGCTTCAGGCATTGAGTGGACGAAACTTGATTGGCTTTGGGGAGCACACAGACCCACAGATCATCTCTGTCCTGAGATCAAACAACACATCAGGCCTGCAAATCAGCCTCAAGGATGGGACTTGGGTTTCTGTCCCACCTGATCAGAACTCCTTTTTCATCAATGTTGGTGATTGTTTGCAGGTGATGAGCAATGGGAGGTTCAAGAGCGTGAAGCATAGGGTTTTGGCAGACACTACAAGTTCAAGGATTTCAATGATCTTCTTTGGAGGGCCACCTTTGAGTGAAAAGATAGCACCTCTGCCGTCACTTATGGCAGAAGGAGAAGAAAGCTTGTACAAAGAGTTCACGTGGTGTGAATACAAAAAGTCCGCGTACAAGTCAAGGCTGGCTGATTATAGGCTAGGGCTGTTCGAGAAATCTGTGCCAATGATGTCAAATTCCCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

342

Amino Acids

38.05

Weight (kDa)

5.76

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30040 AT1G30040
fragaria_vesca	FvH4_3g05530
malus_domestica	MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica	Prupe.4G080700_v2.0.a1
pyrus_communis	pycom05g26290
rosa_chinensis	RchiOBHm_Chr5g0014211
rosa_laevigata	RLG00000032090
rosa_multiflora	Rmu_ssc0000120.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062380
rosa_rugosa	Rorug05G0016200
rosa_samantha	Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana	Rw5G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccII	CGCG	3 cut(s)	23, 434, 947
AciI	CCGC	5 cut(s)	21, 23, 434, 563, 945
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	4 cut(s)	84, 221, 399, 1012
AcuI	CTGAAG	3 cut(s)	132, 529, 563
AcvI	CACGTG	1 cut(s)	924
AdeI	CACNNNGTG	1 cut(s)	927
AfaI	GTAC	2 cut(s)	911, 950
AgsI	TTSAA	7 cut(s)	160, 206, 326, 385, 778, 819, 828
AjiI	CACGTC	1 cut(s)	313
AluBI	AGCT	5 cut(s)	72, 163, 215, 577, 906
AluI	AGCT	5 cut(s)	72, 163, 215, 577, 906
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	2 cut(s)	110, 263
AoxI	GGCC	5 cut(s)	135, 259, 298, 667, 845
ApoI	RAATTY	4 cut(s)	84, 221, 399, 1012
AspLEI	GCGC	2 cut(s)	434, 505
AspS9I	GGNCC	4 cut(s)	97, 260, 299, 845
AsuHPI	GGTGA	4 cut(s)	320, 448, 755, 769
AvaII	GGWCC	1 cut(s)	97
BbrPI	CACGTG	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	621
BccI	CCATC	3 cut(s)	463, 470, 683
BceAI	ACGGC	2 cut(s)	166, 862
BclI	TGATCA	2 cut(s)	48, 715
BfaI	CTAG	1 cut(s)	977
BfuAI	ACCTGC	1 cut(s)	745
BisI	GCNGC	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	97, 260, 299, 845
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	400
BmuI	ACTGGG	1 cut(s)	232
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	668
BsaAI	YACGTR	1 cut(s)	924
BsaJI	CCNNGG	3 cut(s)	21, 172, 494
Bse1I	ACTGG	3 cut(s)	85, 89, 238
Bse3DI	GCAATG	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	21, 172, 494
BseGI	GGATG	2 cut(s)	330, 694
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	3 cut(s)	117, 497, 638
BseNI	ACTGG	3 cut(s)	85, 89, 238
BseYI	CCCAGC	1 cut(s)	481
Bsh1236I	CGCG	3 cut(s)	23, 434, 947
BshFI	GGCC	5 cut(s)	137, 261, 300, 669, 847
BsiHKAI	GWGCWC	1 cut(s)	621
BslFI	GGGAC	3 cut(s)	355, 692, 706
BsmFI	GGGAC	3 cut(s)	355, 692, 706
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	5 cut(s)	137, 261, 300, 669, 847
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	5 cut(s)	21, 23, 434, 563, 945
BspANI	GGCC	5 cut(s)	137, 261, 300, 669, 847
BspCNI	CTCAG	3 cut(s)	116, 498, 639
BspFNI	CGCG	3 cut(s)	23, 434, 947
BspHI	TCATGA	1 cut(s)	192
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	772
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	85, 89, 238
BssECI	CCNNGG	3 cut(s)	21, 172, 494
BssMI	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
BssT1I	CCWWGG	2 cut(s)	172, 494
Bst4CI	ACNGT	2 cut(s)	308, 539
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	1 cut(s)	924
BstC8I	GCNNGC	5 cut(s)	58, 62, 259, 671, 963
BstDEI	CTNAG	3 cut(s)	103, 506, 647
BstDSI	CCRYGG	2 cut(s)	21, 172
BstF5I	GGATG	2 cut(s)	330, 694
BstFNI	CGCG	3 cut(s)	23, 434, 947
BstHHI	GCGC	2 cut(s)	434, 505
BstKTI	GATC	7 cut(s)	46, 51, 271, 636, 653, 718, 834
BstMBI	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 285, 540
BstUI	CGCG	3 cut(s)	23, 434, 947
BsuRI	GGCC	5 cut(s)	137, 261, 300, 669, 847
BtgI	CCRYGG	2 cut(s)	21, 172
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	330, 694
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	78, 420
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	5 cut(s)	58, 62, 259, 671, 963
CaiI	CAGNNNCTG	2 cut(s)	110, 263
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	2 cut(s)	434, 505
Cfr13I	GGNCC	4 cut(s)	97, 260, 299, 845
Cfr42I	CCGCGG	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	910, 949
CviAII	CATG	3 cut(s)	173, 193, 567
CviQI	GTAC	2 cut(s)	910, 949
DdeI	CTNAG	3 cut(s)	103, 506, 647
DpnI	GATC	7 cut(s)	45, 50, 270, 635, 652, 717, 833
DpnII	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
DraIII	CACNNNGTG	1 cut(s)	927
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	2 cut(s)	172, 494
Eco147I	AGGCCT	2 cut(s)	137, 669
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	3 cut(s)	132, 529, 563
Eco72I	CACGTG	1 cut(s)	924
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	172, 494
ErhI	CCWWGG	2 cut(s)	172, 494
FaeI	CATG	3 cut(s)	176, 196, 570
FaiI	YATR	8 cut(s)	128, 174, 194, 426, 568, 792, 887, 972
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	3 cut(s)	355, 692, 706
FatI	CATG	3 cut(s)	172, 192, 566
FauI	CCCGC	1 cut(s)	28
FbaI	TGATCA	2 cut(s)	48, 715
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	317, 701
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	977
GlaI	GCGC	2 cut(s)	433, 504
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	485
HaeIII	GGCC	5 cut(s)	137, 261, 300, 669, 847
HhaI	GCGC	2 cut(s)	434, 505
Hin1II	CATG	3 cut(s)	176, 196, 570
Hin6I	GCGC	2 cut(s)	432, 503
HinP1I	GCGC	2 cut(s)	432, 503
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	904
HphI	GGTGA	4 cut(s)	320, 448, 755, 769
Hpy166II	GTNNAC	5 cut(s)	78, 97, 169, 593, 921
Hpy188I	TCNGA	5 cut(s)	43, 48, 106, 244, 720
Hpy188III	TCNNGA	6 cut(s)	143, 193, 350, 646, 778, 988
Hpy8I	GTNNAC	5 cut(s)	78, 97, 169, 593, 921
HpyAV	CCTTC	3 cut(s)	247, 344, 887
HpyCH4III	ACNGT	2 cut(s)	308, 539
HpyCH4IV	ACGT	2 cut(s)	312, 923
HpyCH4V	TGCA	4 cut(s)	60, 413, 673, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 285, 540
HpyF3I	CTNAG	3 cut(s)	103, 506, 647
HpySE526I	ACGT	2 cut(s)	312, 923
Hsp92II	CATG	3 cut(s)	176, 196, 570
HspAI	GCGC	2 cut(s)	432, 503
Ksp22I	TGATCA	2 cut(s)	48, 715
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
LmnI	GCTCC	1 cut(s)	616
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	977
MaeII	ACGT	2 cut(s)	312, 923
MaeIII	GTNAC	2 cut(s)	308, 879
MalI	GATC	7 cut(s)	45, 50, 270, 635, 652, 717, 833
MboI	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
MboII	GAAGA	4 cut(s)	451, 454, 826, 911
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	7 cut(s)	84, 221, 294, 399, 464, 1012, 1019
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	110, 383, 448, 517, 692, 765, 836, 882
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	505
MvnI	CGCG	3 cut(s)	23, 434, 947
MwoI	GCNNNNNNNGC	3 cut(s)	263, 285, 540
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
NlaIII	CATG	3 cut(s)	176, 196, 570
NmuCI	GTSAC	2 cut(s)	308, 879
PagI	TCATGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	745
PceI	AGGCCT	2 cut(s)	137, 669
PctI	GAATGC	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	25
PmaCI	CACGTG	1 cut(s)	924
PmlI	CACGTG	1 cut(s)	924
Ppu21I	YACGTR	1 cut(s)	924
PspCI	CACGTG	1 cut(s)	924
PspFI	CCCAGC	1 cut(s)	481
PspPI	GGNCC	4 cut(s)	97, 260, 299, 845
PsrI	GAACNNNNNNTAC	2 cut(s)	902, 934
PstNI	CAGNNNCTG	2 cut(s)	110, 263
RsaI	GTAC	2 cut(s)	911, 950
RsaNI	GTAC	2 cut(s)	910, 949
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	7 cut(s)	43, 48, 268, 633, 650, 715, 831
Sau96I	GGNCC	4 cut(s)	97, 260, 299, 845
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	400
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	84, 221, 294, 399, 464, 1012, 1019
SseBI	AGGCCT	2 cut(s)	137, 669
SsiI	CCGC	5 cut(s)	21, 23, 434, 563, 945
SspMI	CTAG	1 cut(s)	977
StuI	AGGCCT	2 cut(s)	137, 669
StyI	CCWWGG	2 cut(s)	172, 494
TaaI	ACNGT	2 cut(s)	308, 539
TaiI	ACGT	2 cut(s)	315, 926
TaqI	TCGA	1 cut(s)	987
TasI	AATT	7 cut(s)	84, 221, 294, 399, 464, 1012, 1019
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	85, 420
TseFI	GTSAC	2 cut(s)	308, 879
Tsp45I	GTSAC	2 cut(s)	308, 879
TspDTI	ATGAA	2 cut(s)	181, 721
TspGWI	ACGGA	2 cut(s)	297, 395
TspRI	CASTG	2 cut(s)	85, 420
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	4 cut(s)	84, 221, 399, 1012
XspI	CTAG	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.