Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013952

Physical Location & Seq

Genomic Coordinates Reverse (-)

35639451 .. 35641331

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1262000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTGGTTCTGTCACGAACAGCTAAATTGGACCATTTTTCTGACCTAATCAAAACATGCAAGCCCACCAGCTTGTTCGCCGGCATCCCAGTCGTCGACCTCTCGAGCCCCGACGCAAAGCACCGCATAGTCAGGGCTTGTGAGGAGCACGGCATGTTTAAGGTGATCAACCATGGAGTCCCATTGGACTTCATGACTACACTGGAAGCCCAAGCTCTCAAATTTTTCAACCTGCCCCAGTCGCAGAAGGACAAGGCAGCCCCCGCCGACCCTTTCGGCTACAGAAGCAAGAGAATCGGTCCAAACGGCGACGTGGGTTGGATCGAATACATCCTCCTCAGCACCAATCTTGATATCATCTCTCATAAGTCCCTCCCCATTTTCAAGGAAAACCCTGAAATTTTCCGTGACGCAGTGGAAGATTATATTACAGCAGTGAAGAACATGACTTTTGAAGTGCTGGAAATGGTGGCTGATGGGCTGGGGATTGATCAAAAGAATGTGCTGAGCAAGCTTTTGAAAGATGAGAAGAGTGACTCATGTTTCAGGCTGAACTACTATCCGCCATGCCCAGAGCTTCACGCTTTGAGTGGACGAAGTTTGATAGGGTTTGGGGAGCACACAGACCCACAGATCATTTCTGTCCTGAAATCCAACAACACATCAGGCCTGCAGATCAGTCTCAAGGATGGGACTTGGGTTACAGTCGCACCTGATCAGACTGCCTTTTTCATCAATGTTGGTGATTGCTTGCAGGTGATGACTAACGGGCGGTTTAAGAGCGTGAAACATAGGGTTTTGGCTGACACACAAAGTTCAAGGGTTTCAATGATCTACTTTGGAGGGCCACCTTTGAGTGAGAAGATAGCACCTCTGCCGTCTCTAATGGCAGAAGGAGAAGAAAGCTTGTACAAGGAGTTCACGTGGAGTGAATTCAAAAAGTCTGCGAACAGGTCAAGGCTGGCCGATAATAGGCTAGGACCATTTGAGAAGTCTGCTGCTGTGATGCTGTCCAATTCCCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009987 GO:0010114 GO:0010817 GO:0016042 GO:0016053 GO:0016054 GO:0016101 GO:0016102 GO:0016103 GO:0016114 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042446 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0045487 GO:0045543 GO:0046394 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

343

Amino Acids

38.05

Weight (kDa)

6.72

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	29 - 95	6.9e-15	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	179 - 281	5.3e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30040 AT1G30040
fragaria_vesca	FvH4_3g05530
malus_domestica	MD05G1283800.v1.1 MD10G1262000.v1.1
prunus_persica	Prupe.4G080700_v2.0.a1
pyrus_communis	pycom05g26290
rosa_chinensis	RchiOBHm_Chr5g0014211
rosa_laevigata	RLG00000032090
rosa_multiflora	Rmu_ssc0000120.1_g000010
rosa_roxburghii	Rroxscaffold_1G00062380
rosa_rugosa	Rorug05G0016200
rosa_samantha	Rh5AG110500 Rh5BG107700 Rh5CG119200 Rh5DG105900
rosa_wichuraiana	Rw5G009620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	2 cut(s)	240, 745
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	4 cut(s)	124, 264, 563, 772
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	963
AcsI	RAATTY	3 cut(s)	221, 399, 932
AcvI	CACGTG	1 cut(s)	924
AfaI	GTAC	1 cut(s)	911
AfiI	CCNNNNNNNGG	1 cut(s)	972
AgsI	TTSAA	7 cut(s)	229, 385, 455, 520, 819, 828, 937
AjiI	CACGTC	1 cut(s)	313
AluBI	AGCT	6 cut(s)	23, 72, 215, 514, 577, 906
AluI	AGCT	6 cut(s)	23, 72, 215, 514, 577, 906
Alw21I	GWGCWC	2 cut(s)	150, 621
Alw26I	GTCTC	2 cut(s)	686, 885
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	3 cut(s)	667, 845, 963
ApeKI	GCWGC	2 cut(s)	257, 998
ApoI	RAATTY	3 cut(s)	221, 399, 932
AspS9I	GGNCC	4 cut(s)	31, 299, 845, 980
AsuHPI	GGTGA	3 cut(s)	175, 755, 769
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	3 cut(s)	31, 299, 980
BanII	GRGCYC	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	150, 621
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	269, 985
BccI	CCATC	2 cut(s)	470, 683
BceAI	ACGGC	3 cut(s)	166, 322, 862
BcgI	CGANNNNNNTGC	4 cut(s)	73, 107, 277, 311
BclI	TGATCA	3 cut(s)	165, 490, 715
BcoDI	GTCTC	2 cut(s)	686, 885
BfaI	CTAG	1 cut(s)	977
BfmI	CTRYAG	2 cut(s)	280, 671
BfuAI	ACCTGC	2 cut(s)	240, 745
BisI	GCNGC	2 cut(s)	258, 999
BlpI	GCTNAGC	1 cut(s)	506
BlsI	GCNGC	2 cut(s)	259, 1000
Bme18I	GGWCC	3 cut(s)	31, 299, 980
BmeT110I	CYCGRG	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	31, 299, 845, 980
BmrI	ACTGGG	2 cut(s)	83, 232
BmsI	GCATC	2 cut(s)	93, 996
BmuI	ACTGGG	2 cut(s)	83, 232
Bpu10I	CCTNAGC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	668
BsaAI	YACGTR	1 cut(s)	924
BsaJI	CCNNGG	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	908, 938
Bsc4I	CCNNNNNNNGG	1 cut(s)	972
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	3 cut(s)	89, 207, 238
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	3 cut(s)	84, 330, 694
BseLI	CCNNNNNNNGG	1 cut(s)	972
BseMII	CTCAG	2 cut(s)	352, 497
BseNI	ACTGG	3 cut(s)	89, 207, 238
BseRI	GAGGAG	2 cut(s)	158, 326
BseXI	GCAGC	2 cut(s)	269, 985
BseYI	CCCAGC	1 cut(s)	481
BshFI	GGCC	3 cut(s)	669, 847, 965
BsiHKAI	GWGCWC	2 cut(s)	150, 621
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	3 cut(s)	164, 355, 706
BslI	CCNNNNNNNGG	1 cut(s)	972
BsmAI	GTCTC	2 cut(s)	686, 885
BsmBI	CGTCTC	1 cut(s)	885
BsmFI	GGGAC	3 cut(s)	164, 355, 706
BsnI	GGCC	3 cut(s)	669, 847, 965
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	3 cut(s)	110, 150, 621
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
Bsp1720I	GCTNAGC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	4 cut(s)	124, 264, 563, 772
BspANI	GGCC	3 cut(s)	669, 847, 965
BspCNI	CTCAG	2 cut(s)	351, 498
BspHI	TCATGA	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	675
BspMI	ACCTGC	2 cut(s)	240, 745
BspPI	GGATC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	80
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	89, 207, 238
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	1 cut(s)	524
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	1 cut(s)	924
BstC8I	GCNNGC	6 cut(s)	62, 82, 512, 671, 752, 963
BstDEI	CTNAG	2 cut(s)	338, 506
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	3 cut(s)	84, 330, 694
BstKTI	GATC	7 cut(s)	168, 324, 493, 636, 678, 718, 834
BstMAI	GTCTC	2 cut(s)	686, 885
BstMBI	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	241, 263, 285, 511
BstNSI	RCATGY	2 cut(s)	60, 157
BstSFI	CTRYAG	2 cut(s)	280, 671
BstV1I	GCAGC	2 cut(s)	269, 985
BsuRI	GGCC	3 cut(s)	669, 847, 965
BtgI	CCRYGG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	84, 330, 694
BtsI	GCAGTG	2 cut(s)	420, 441
BtsIMutI	CAGTG	3 cut(s)	200, 420, 441
BveI	ACCTGC	2 cut(s)	240, 745
Cac8I	GCNNGC	6 cut(s)	62, 82, 512, 671, 752, 963
CciI	TCATGA	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	31, 299, 845, 980
CseI	GACGC	2 cut(s)	122, 419
Csp6I	GTAC	1 cut(s)	910
CviAII	CATG	7 cut(s)	57, 154, 173, 193, 445, 540, 567
CviQI	GTAC	1 cut(s)	910
DdeI	CTNAG	2 cut(s)	338, 506
DpnI	GATC	7 cut(s)	167, 323, 492, 635, 677, 717, 833
DpnII	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
EaeI	YGGCCR	1 cut(s)	963
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
EciI	GGCGGA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	172
Eco147I	AGGCCT	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	3 cut(s)	31, 299, 980
Eco72I	CACGTG	1 cut(s)	924
Eco88I	CYCGRG	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	932
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	885
FaeI	CATG	7 cut(s)	60, 157, 176, 196, 448, 543, 570
FaqI	GGGAC	3 cut(s)	164, 355, 706
FatI	CATG	7 cut(s)	56, 153, 172, 192, 444, 539, 566
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	3 cut(s)	165, 490, 715
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	2 cut(s)	258, 999
FokI	GGATG	3 cut(s)	71, 317, 701
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	258, 999
FspBI	CTAG	1 cut(s)	977
GluI	GCNGC	2 cut(s)	258, 999
GsaI	CCCAGC	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	669, 847, 965
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	2 cut(s)	122, 419
Hin1II	CATG	7 cut(s)	60, 157, 176, 196, 448, 543, 570
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	512, 904
HinfI	GANTC	3 cut(s)	177, 294, 536
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	3 cut(s)	175, 755, 769
Hpy166II	GTNNAC	3 cut(s)	97, 593, 921
Hpy188I	TCNGA	2 cut(s)	43, 720
Hpy188III	TCNNGA	5 cut(s)	15, 103, 193, 350, 646
Hpy8I	GTNNAC	3 cut(s)	97, 593, 921
Hpy99I	CGWCG	3 cut(s)	98, 116, 314
HpyAV	CCTTC	2 cut(s)	241, 887
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	2 cut(s)	312, 923
HpyCH4V	TGCA	3 cut(s)	60, 673, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	241, 263, 285, 511
HpyF3I	CTNAG	2 cut(s)	338, 506
HpySE526I	ACGT	2 cut(s)	312, 923
Hsp92II	CATG	7 cut(s)	60, 157, 176, 196, 448, 543, 570
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	3 cut(s)	165, 490, 715
Kzo9I	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
LmnI	GCTCC	2 cut(s)	145, 616
Lsp1109I	GCAGC	2 cut(s)	269, 985
LweI	GCATC	2 cut(s)	93, 996
MaeI	CTAG	1 cut(s)	977
MaeII	ACGT	2 cut(s)	312, 923
MaeIII	GTNAC	4 cut(s)	12, 407, 533, 700
MalI	GATC	7 cut(s)	167, 323, 492, 635, 677, 717, 833
MboI	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
MboII	GAAGA	5 cut(s)	431, 451, 541, 874, 911
MhlI	GDGCHC	3 cut(s)	110, 150, 621
MluCI	AATT	6 cut(s)	26, 221, 399, 932, 1015, 1022
MlyI	GAGTC	2 cut(s)	186, 530
MmeI	TCCRAC	2 cut(s)	299, 678
MnlI	CCTC	7 cut(s)	110, 136, 344, 347, 383, 836, 882
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	2 cut(s)	159, 777
MspI	CCGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	4 cut(s)	241, 263, 285, 511
NaeI	GCCGGC	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	7 cut(s)	60, 157, 176, 196, 448, 543, 570
NmuCI	GTSAC	3 cut(s)	12, 407, 533
NspI	RCATGY	2 cut(s)	60, 157
PaeR7I	CTCGAG	1 cut(s)	103
PagI	TCATGA	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	745
PceI	AGGCCT	1 cut(s)	669
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	259, 1000
PleI	GAGTC	2 cut(s)	185, 530
PmaCI	CACGTG	1 cut(s)	924
PmlI	CACGTG	1 cut(s)	924
PpsI	GAGTC	2 cut(s)	185, 530
Ppu21I	YACGTR	1 cut(s)	924
PspCI	CACGTG	1 cut(s)	924
PspFI	CCCAGC	1 cut(s)	481
PspPI	GGNCC	4 cut(s)	31, 299, 845, 980
PsrI	GAACNNNNNNTAC	2 cut(s)	902, 934
PstI	CTGCAG	1 cut(s)	675
RsaI	GTAC	1 cut(s)	911
RsaNI	GTAC	1 cut(s)	910
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	159, 777
SatI	GCNGC	2 cut(s)	258, 999
Sau3AI	GATC	7 cut(s)	165, 321, 490, 633, 675, 715, 831
Sau96I	GGNCC	4 cut(s)	31, 299, 845, 980
SchI	GAGTC	2 cut(s)	186, 530
SduI	GDGCHC	3 cut(s)	110, 150, 621
SfaNI	GCATC	2 cut(s)	93, 996
SfcI	CTRYAG	2 cut(s)	280, 671
Sfr274I	CTCGAG	1 cut(s)	103
SinI	GGWCC	3 cut(s)	31, 299, 980
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	103, 683
SmoI	CTYRAG	2 cut(s)	103, 683
Sse9I	AATT	6 cut(s)	26, 221, 399, 932, 1015, 1022
SseBI	AGGCCT	1 cut(s)	669
SsiI	CCGC	4 cut(s)	124, 264, 563, 772
SspMI	CTAG	1 cut(s)	977
StuI	AGGCCT	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	2 cut(s)	315, 926
TaqI	TCGA	3 cut(s)	96, 104, 324
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	6 cut(s)	26, 221, 399, 932, 1015, 1022
TatI	WGTACW	1 cut(s)	909
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	159, 777
Tru9I	TTAA	2 cut(s)	159, 777
TscAI	CASTG	3 cut(s)	207, 420, 441
TseFI	GTSAC	3 cut(s)	12, 407, 533
TseI	GCWGC	2 cut(s)	257, 998
Tsp45I	GTSAC	3 cut(s)	12, 407, 533
TspDTI	ATGAA	2 cut(s)	181, 721
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	3 cut(s)	207, 420, 441
VpaK11BI	GGWCC	3 cut(s)	31, 299, 980
XapI	RAATTY	3 cut(s)	221, 399, 932
XceI	RCATGY	2 cut(s)	60, 157
XhoI	CTCGAG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.