AT1G30090

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011247
Physical Location & Seq
Reverse (-)
10559496 .. 10561545
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30090.1

Sequence Viewer

Length: 1197 bp
ATGCAGAGGGTTAGGGTTTCATCTCAAAGAGCAGTTGTGCATAAGCTTGGTGATTCTCAGATGACATTATCTCCCAAATTTAGAGTAGCTGCATCGATACAATCGACATTGTTCGATAGATCATCGGAATTAGAACTGTCTCTTAGAGGAGAGCCCTTGATTCCCGGTTTACCAGACGATGTTGCGCTTAACTGTCTTTTACGGGTTCCAGTTCAAAGCCATGTATCGAGTAAATCCGTGTGCAAGAGATGGCATCTTTTGTTTGGTACTAAAGAGACGTTTTTCGCTAAGCGTAAGGAGTTCGGGTTTAAAGACCCGTGGCTGTTCGTTGTCGGGTTTAGTAGATGCACTGGGAAGATCCAGTGGAAGGTTTTGGATTTGAGGAATCTCACTTGGCATGAAATCCCTGCTATGCCTTGCAGAGATAAAGTTTGTCCTCACGGTTTTAGATCGGTTTCGATGCCTCGCGAAGGTACTATGTTTGTATGTGGTGGAATGGTTTCGGATTCTGATTGTCCTCTTGATTTGGTGTTGAAGTATGATATGGTGAAGAATCATTGGACTGTCACTAACAAGATGATAACCGCGAGGTCGTTTTTCGCTAGCGGTGTGATCGATGGGATGATATACGCGGCAGGTGGAAATGCTGCGGATTTATATGAGCTTGATTGTGCCGAGGTTTTGAACCCTTTGGATGGGAATTGGCGGCCAGTTTCGAACATGGTAGCTCATATGGCGTCTTACGACACAGCGGTTTTAAACGGGAAGCTTTTGGTAACGGAAGGATGGTTATGGCCGTTCTTTGTATCCCCGAGAGGTCAAGTTTATGACCCGAGGACGGATCAATGGGAAACAATGTCAATGGGGCTAAGAGAAGGATGGACCGGGACGAGTGTCGTGATTTATGATCGGTTGTTTATAGTTTCGGAGTTAGAGAGAATGAAGATGAAGGTTTATGATCCGGTTACAGATTCGTGGGAGACGATTAACGGACCGGAATTGCCTGAGCAGATTTGTAGACCGTTTGCGGTTAACTGTTATGGGAACAGAGTATATGTGGTTGGTAGGAATCTTCATCTCGCGGTTGGGAATATTTGGCAGTCGGAGAATAAGTTTGCTGTGAGGTGGGAGGTTGTTGAGTCGCCGGAGCGTTATGCAGATATAACTCCATCGAATTCTCAGATTCTTTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

398

Amino Acids

45.15

Weight (kDa)

7.56

Isoelectric Point (pI)

48.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 55 - 89 5.7e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 123 - 288 1.8e-07 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 129 - 249 4e-06 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 161 - 356 9.5e-19 FKB95, Kelch-repeats domain
Kelch_1 PF01344 196 - 241 1.6e-07 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 626
Acc36I ACCTGC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 1018
AccII CGCG 4 cut(s) 468, 587, 632, 1082
AciI CCGC 8 cut(s) 585, 606, 632, 650, 706, 752, 1028, 1082
AclWI GGATC 3 cut(s) 352, 849, 953
AcoI YGGCCR 2 cut(s) 707, 794
AcsI RAATTY 2 cut(s) 77, 1174
AcyI GRCGYC 1 cut(s) 737
AfaI GTAC 2 cut(s) 268, 475
AfiI CCNNNNNNNGG 4 cut(s) 367, 470, 695, 838
AgsI TTSAA 3 cut(s) 215, 535, 685
AluBI AGCT 5 cut(s) 46, 89, 664, 728, 769
AluI AGCT 5 cut(s) 46, 89, 664, 728, 769
Alw26I GTCTC 3 cut(s) 144, 269, 974
AlwI GGATC 3 cut(s) 352, 849, 953
Ama87I CYCGRG 2 cut(s) 811, 832
AoxI GGCC 2 cut(s) 707, 794
ApeKI GCWGC 2 cut(s) 89, 647
ApoI RAATTY 2 cut(s) 77, 1174
Asp700I GAANNNNTTC 1 cut(s) 499
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 882, 992
AsuC2I CCSGG 2 cut(s) 165, 886
AsuHPI GGTGA 2 cut(s) 62, 559
AsuII TTCGAA 1 cut(s) 716
AsuNHI GCTAGC 1 cut(s) 602
AvaI CYCGRG 2 cut(s) 811, 832
AvaII GGWCC 2 cut(s) 882, 992
BanII GRGCYC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 76, 634
BccI CCATC 6 cut(s) 243, 611, 689, 780, 873, 1177
BceAI ACGGC 1 cut(s) 781
BciVI GTATCC 1 cut(s) 817
BcnI CCSGG 2 cut(s) 165, 886
BcoDI GTCTC 3 cut(s) 144, 269, 974
BfaI CTAG 1 cut(s) 603
BfuAI ACCTGC 1 cut(s) 626
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 4 cut(s) 90, 633, 648, 707
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 4 cut(s) 91, 634, 649, 708
Bme1390I CCNGG 2 cut(s) 165, 886
Bme18I GGWCC 2 cut(s) 882, 992
BmeT110I CYCGRG 2 cut(s) 811, 832
BmgT120I GGNCC 2 cut(s) 882, 992
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 165, 886
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 4 cut(s) 101, 262, 335, 450
BmtI GCTAGC 1 cut(s) 606
BmuI ACTGGG 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 893
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu1102I GCTNAGC 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 716
BpuMI CCSGG 2 cut(s) 165, 886
Bsa29I ATCGAT 2 cut(s) 95, 615
BsaHI GRCGYC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 317, 675, 833
BsaWI WCCGGW 2 cut(s) 961, 994
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 290, 320, 1097, 1127
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 470, 695, 838
Bse1I ACTGG 4 cut(s) 209, 355, 361, 710
BseCI ATCGAT 2 cut(s) 95, 615
BseDI CCNNGG 3 cut(s) 317, 675, 833
BseGI GGATG 4 cut(s) 627, 700, 791, 884
BseLI CCNNNNNNNGG 4 cut(s) 367, 470, 695, 838
BseMII CTCAG 3 cut(s) 71, 996, 1193
BseNI ACTGG 4 cut(s) 209, 355, 361, 710
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 76, 634
Bsh1236I CGCG 4 cut(s) 468, 587, 632, 1082
BshFI GGCC 2 cut(s) 709, 796
BshVI ATCGAT 2 cut(s) 95, 615
BsiHKCI CYCGRG 2 cut(s) 811, 832
BsiSI CCGG 5 cut(s) 165, 885, 962, 995, 1145
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 4 cut(s) 367, 470, 695, 838
BsmAI GTCTC 3 cut(s) 144, 269, 974
BsmBI CGTCTC 2 cut(s) 269, 974
BsmFI GGGAC 1 cut(s) 901
BsnI GGCC 2 cut(s) 709, 796
BsoBI CYCGRG 2 cut(s) 811, 832
Bsp119I TTCGAA 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
Bsp1720I GCTNAGC 1 cut(s) 288
Bsp68I TCGCGA 1 cut(s) 468
BspACI CCGC 8 cut(s) 585, 606, 632, 650, 706, 752, 1028, 1082
BspANI GGCC 2 cut(s) 709, 796
BspCNI CTCAG 3 cut(s) 70, 997, 1192
BspDI ATCGAT 2 cut(s) 95, 615
BspFNI CGCG 4 cut(s) 468, 587, 632, 1082
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 626
BspOI GCTAGC 1 cut(s) 606
BspPI GGATC 3 cut(s) 352, 849, 953
BspT104I TTCGAA 1 cut(s) 716
BsrI ACTGG 4 cut(s) 209, 355, 361, 710
BssECI CCNNGG 3 cut(s) 317, 675, 833
BssMI GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
BssNI GRCGYC 1 cut(s) 737
Bst4CI ACNGT 6 cut(s) 138, 194, 443, 565, 1023, 1037
BstACI GRCGYC 1 cut(s) 737
BstBI TTCGAA 1 cut(s) 716
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 6 cut(s) 57, 143, 288, 869, 1005, 1179
BstDSI CCRYGG 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 627, 700, 791, 884
BstFNI CGCG 4 cut(s) 468, 587, 632, 1082
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 7 cut(s) 122, 360, 452, 615, 844, 910, 961
BstMAI GTCTC 3 cut(s) 144, 269, 974
BstMBI GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstPAI GACNNNNGTC 1 cut(s) 893
BstSCI CCNGG 2 cut(s) 163, 884
BstUI CGCG 4 cut(s) 468, 587, 632, 1082
BstV1I GCAGC 2 cut(s) 76, 634
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
Bsu15I ATCGAT 2 cut(s) 95, 615
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 2 cut(s) 709, 796
BsuTUI ATCGAT 2 cut(s) 95, 615
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 4 cut(s) 627, 700, 791, 884
BtsIMutI CAGTG 2 cut(s) 348, 368
BtuMI TCGCGA 1 cut(s) 468
BveI ACCTGC 1 cut(s) 626
Cac8I GCNNGC 1 cut(s) 604
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 882, 992
ClaI ATCGAT 2 cut(s) 95, 615
CpoI CGGWCCG 1 cut(s) 992
CseI GACGC 1 cut(s) 726
Csp6I GTAC 2 cut(s) 267, 474
CspI CGGWCCG 1 cut(s) 992
CviAII CATG 3 cut(s) 221, 398, 721
CviQI GTAC 2 cut(s) 267, 474
DdeI CTNAG 6 cut(s) 57, 143, 288, 869, 1005, 1179
DpnI GATC 7 cut(s) 121, 359, 451, 614, 843, 909, 960
DpnII GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
DraI TTTAAA 2 cut(s) 310, 759
EaeI YGGCCR 2 cut(s) 707, 794
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 882, 992
Eco88I CYCGRG 2 cut(s) 811, 832
EcoNI CCTNNNNNAGG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 1174
EcoT38I GRGCYC 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 269, 974
FaeI CATG 3 cut(s) 224, 401, 724
FaqI GGGAC 1 cut(s) 901
FatI CATG 3 cut(s) 220, 397, 720
FauNDI CATATG 1 cut(s) 732
FblI GTMKAC 1 cut(s) 1018
Fnu4HI GCNGC 4 cut(s) 90, 633, 648, 707
FokI GGATG 4 cut(s) 634, 707, 798, 891
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 4 cut(s) 90, 633, 648, 707
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 186
GluI GCNGC 4 cut(s) 90, 633, 648, 707
HaeIII GGCC 2 cut(s) 709, 796
HapII CCGG 5 cut(s) 165, 885, 962, 995, 1145
HgaI GACGC 1 cut(s) 726
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 737
Hin1II CATG 3 cut(s) 224, 401, 724
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HindIII AAGCTT 2 cut(s) 44, 767
HinfI GANTC 9 cut(s) 53, 160, 385, 506, 553, 971, 1069, 1139, 1183
HpaI GTTAAC 1 cut(s) 1033
HpaII CCGG 5 cut(s) 165, 885, 962, 995, 1145
HphI GGTGA 2 cut(s) 62, 559
Hpy166II GTNNAC 3 cut(s) 170, 1019, 1033
Hpy188I TCNGA 7 cut(s) 60, 127, 505, 511, 928, 1105, 1182
Hpy188III TCNNGA 3 cut(s) 467, 521, 898
Hpy8I GTNNAC 3 cut(s) 170, 1019, 1033
HpyAV CCTTC 5 cut(s) 361, 464, 776, 869, 943
HpyCH4III ACNGT 6 cut(s) 138, 194, 443, 565, 1023, 1037
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 7 cut(s) 4, 40, 92, 243, 348, 420, 1157
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpyF3I CTNAG 6 cut(s) 57, 143, 288, 869, 1005, 1179
HpySE526I ACGT 1 cut(s) 278
Hsp92I GRCGYC 1 cut(s) 737
Hsp92II CATG 3 cut(s) 224, 401, 724
HspAI GCGC 1 cut(s) 185
KspAI GTTAAC 1 cut(s) 1033
Kzo9I GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
LmnI GCTCC 1 cut(s) 1147
Lsp1109I GCAGC 2 cut(s) 76, 634
LweI GCATC 4 cut(s) 101, 262, 335, 450
MaeI CTAG 1 cut(s) 603
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 565, 775, 964
MalI GATC 7 cut(s) 121, 359, 451, 614, 843, 909, 960
MboI GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
MboII GAAGA 4 cut(s) 367, 562, 955, 1064
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 5 cut(s) 77, 128, 700, 998, 1174
MlyI GAGTC 1 cut(s) 1148
MmeI TCCRAC 1 cut(s) 1083
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 6 cut(s) 189, 309, 758, 987, 1032, 1195
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 5 cut(s) 165, 885, 962, 995, 1145
MspR9I CCNGG 2 cut(s) 165, 886
MvnI CGCG 4 cut(s) 468, 587, 632, 1082
MwoI GCNNNNNNNGC 1 cut(s) 734
NciI CCSGG 2 cut(s) 165, 886
NdeI CATATG 1 cut(s) 732
NdeII GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
NheI GCTAGC 1 cut(s) 602
NlaIII CATG 3 cut(s) 224, 401, 724
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 1 cut(s) 565
NruI TCGCGA 1 cut(s) 468
NspV TTCGAA 1 cut(s) 716
PaqCI CACCTGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 980
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 8 cut(s) 53, 160, 385, 506, 553, 971, 1069, 1183
PkrI GCNGC 4 cut(s) 91, 634, 649, 708
PleI GAGTC 1 cut(s) 1147
PpsI GAGTC 1 cut(s) 1147
PshAI GACNNNNGTC 1 cut(s) 893
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 2 cut(s) 882, 992
PsuI RGATCY 1 cut(s) 357
RruI TCGCGA 1 cut(s) 468
RsaI GTAC 2 cut(s) 268, 475
RsaNI GTAC 2 cut(s) 267, 474
Rsr2I CGGWCCG 1 cut(s) 992
RsrII CGGWCCG 1 cut(s) 992
SaqAI TTAA 6 cut(s) 189, 309, 758, 987, 1032, 1195
SatI GCNGC 4 cut(s) 90, 633, 648, 707
Sau3AI GATC 7 cut(s) 119, 357, 449, 612, 841, 907, 958
Sau96I GGNCC 2 cut(s) 882, 992
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 2 cut(s) 165, 886
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 4 cut(s) 101, 262, 335, 450
SfuI TTCGAA 1 cut(s) 716
SinI GGWCC 2 cut(s) 882, 992
Sse9I AATT 5 cut(s) 77, 128, 700, 998, 1174
SsiI CCGC 8 cut(s) 585, 606, 632, 650, 706, 752, 1028, 1082
SspI AATATT 1 cut(s) 1093
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 163, 884
TaaI ACNGT 6 cut(s) 138, 194, 443, 565, 1023, 1037
TaiI ACGT 1 cut(s) 281
TaqI TCGA 8 cut(s) 95, 104, 114, 227, 458, 615, 716, 1172
TasI AATT 5 cut(s) 77, 128, 700, 998, 1174
TauI GCSGC 2 cut(s) 635, 709
TfiI GAWTC 8 cut(s) 53, 160, 385, 506, 553, 971, 1069, 1183
Tru1I TTAA 6 cut(s) 189, 309, 758, 987, 1032, 1195
Tru9I TTAA 6 cut(s) 189, 309, 758, 987, 1032, 1195
TscAI CASTG 2 cut(s) 355, 368
TseFI GTSAC 1 cut(s) 565
TseI GCWGC 2 cut(s) 89, 647
Tsp45I GTSAC 1 cut(s) 565
TspDTI ATGAA 5 cut(s) 9, 414, 956, 962, 1064
TspGWI ACGGA 4 cut(s) 226, 794, 854, 1005
TspRI CASTG 2 cut(s) 355, 368
VpaK11BI GGWCC 2 cut(s) 882, 992
XagI CCTNNNNNAGG 1 cut(s) 468
XapI RAATTY 2 cut(s) 77, 1174
XmiI GTMKAC 1 cut(s) 1018
XmnI GAANNNNTTC 1 cut(s) 499
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.