Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011247

Physical Location & Seq

Genomic Coordinates Reverse (-)

3978733 .. 3981035

Gene Structure 2303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G081700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCAACGGGTTCGATTGTCCTCCCAACAGGCACCCGTACACAAGCTAGGGGATTCTCAAATTACATTATCCCCAAAGTTTAGGTTAGCGGTTATCCAATCTTCTTTGTTGAATCCTTCCCCAGACTTAGAGTTATCTCACGGGGGAGAACCCCTCATTCCGGGCCTTCCTGATGATGTTGCACTTAACTGTCTCCTTCGGCTTCCAGTCCAGAGCCACACAGCAAGCAAAGCTGTCTGCAAGCGTTGGCATCTACTGCTTGGTAGTAAAGAGCGGTTTTTCACTCGAAGAAAAGAATTAGGCTTCAAAGACCCTTGGCTTTTCGTCTTTGCCTATCATAAGTGCACTGGAAAGATTCAGTGGCAGGTTCTTGATCTCACTAATTTCTCTTGGCACACTATCCCTGCCATGCCCTGCAGAGAAAAAGTTTGTCCCCATGGATTCAGATGTGTTTCAACTCCCCGTGATGGCACTCTCTTTGTTTGTGGTGGAACGGTCTCTGATGTGGATTGTCCACTTGACTTGGTCCTGAAATATGAAATGCAGAAGAATCGGTGGACTGTGGTGAATCAGATGATAAGTGCTAGGTCATTTTTTGCAAGTGGAGTTATTGATGGGATGATTTATGTGGCTGGAGGAAACAGCACAGATCTTTTTGAGCTTGACTCAGCTGAGGTTTTGGACCCTGTTGAAGGGACTTGGCATCCCATTGCGAATATGGGAACAAATATGGCCTCTTATGATGCAGCAGTTCTCAATGGAAAGCTTCTTGTTACCGAAGGCTGGTTGTGGCCTTTCTATGTCTCTCCCAGGGGTCAGGTTTATGATCCAAGAACTAATAATTGGGAGAGTATGGCTGTTGGACTGAGAGAAGGCTGGACAGGTTCAAGTGTGGTGATTTATGGCCATTTGTTTGTGGTCGCAGAGCTTGAAAGGATGAAGCTTAAAGTTTATGATGCGGATACTGATAAGTGGGAAGCAATAGAAGGGCCCCCTTTGCCAGAGCAGATATGTAAACCCTTTGCTGTGAATGCCTGCGATTGCAGGATATACGTTGTGGGTAGGAACCTTCATGTTGCTGAGGGTCACATCTCAAGGGTTAGCCGTAAAGGAACTTGTGAGAAGAAGTGGTGCTTTGGTGTTCGATGGAATGTGGTCGATTCCCCAGATTGTTTCTCTGACTTGACACCCTCAAGCTCACAGGTCCTGTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

406

Amino Acids

45.37

Weight (kDa)

7.13

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30090
fragaria_vesca	FvH4_3g05461
malus_domestica	MD05G1283000.v1.1 MD10G1261300.v1.1
prunus_persica	Prupe.4G081700_v2.0.a1 Prupe.4G081700_v2.0.a1 Prupe.4G081700_v2.0.a1
pyrus_communis	pycom05g26240 pycom10g21750
rosa_chinensis	RchiOBHm_Chr5g0014291
rosa_laevigata	RLG00000032096
rosa_multiflora	Rmu_co8486329.1_g000001 Rmu_sc0009295.1_g000009
rosa_roxburghii	Rroxscaffold_1G00062280
rosa_rugosa	Rorug05G0016900
rosa_samantha	Rh5AG111200 Rh5BG108500 Rh5CG120100 Rh5DG107100
rosa_wichuraiana	Rw5G009710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	31
AccBSI	CCGCTC	1 cut(s)	274
AciI	CCGC	3 cut(s)	89, 274, 959
AclWI	GGATC	1 cut(s)	821
AcoI	YGGCCR	1 cut(s)	904
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	4 cut(s)	160, 467, 692, 783
AgsI	TTSAA	6 cut(s)	112, 307, 456, 692, 888, 932
AjnI	CCWGG	1 cut(s)	809
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
AluBI	AGCT	8 cut(s)	46, 233, 661, 671, 766, 928, 943, 1197
AluI	AGCT	8 cut(s)	46, 233, 661, 671, 766, 928, 943, 1197
Alw21I	GWGCWC	1 cut(s)	347
Alw26I	GTCTC	3 cut(s)	197, 502, 808
Alw44I	GTGCAC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	821
AlwNI	CAGNNNCTG	1 cut(s)	1207
AoxI	GGCC	5 cut(s)	163, 732, 791, 904, 989
ApaI	GGGCCC	1 cut(s)	993
ApaLI	GTGCAC	1 cut(s)	343
ApeKI	GCWGC	1 cut(s)	746
AspS9I	GGNCC	6 cut(s)	163, 526, 682, 989, 990, 1204
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	577, 907
AvaII	GGWCC	3 cut(s)	526, 682, 1204
BaeGI	GKGCMC	2 cut(s)	347, 993
BalI	TGGCCA	1 cut(s)	906
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	347
BbvCI	CCTCAGC	2 cut(s)	672, 1080
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	3 cut(s)	461, 608, 1140
BceAI	ACGGC	1 cut(s)	1089
BcgI	CGANNNNNNTGC	3 cut(s)	27, 533, 567
BciT130I	CCWGG	1 cut(s)	811
BciVI	GTATCC	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	197, 502, 808
BfaI	CTAG	2 cut(s)	47, 585
BfmI	CTRYAG	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	355
BfuI	GTATCC	1 cut(s)	955
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	162, 811
Bme18I	GGWCC	3 cut(s)	526, 682, 1204
BmgT120I	GGNCC	6 cut(s)	163, 526, 682, 989, 990, 1204
BmiI	GGNNCC	5 cut(s)	33, 684, 991, 992, 1067
BmrFI	CCNGG	2 cut(s)	162, 811
BmsI	GCATC	4 cut(s)	259, 712, 733, 946
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 650, 682
BpmI	CTGGAG	1 cut(s)	654
Bpu10I	CCTNAGC	2 cut(s)	672, 1080
BpuEI	CTTGAG	2 cut(s)	1078, 1177
BpuMI	CCSGG	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	4 cut(s)	314, 436, 809, 810
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 467, 692, 783
Bse1I	ACTGG	2 cut(s)	206, 352
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	811
BseDI	CCNNGG	4 cut(s)	314, 436, 809, 810
BseGI	GGATG	3 cut(s)	624, 703, 942
BseLI	CCNNNNNNNGG	4 cut(s)	160, 467, 692, 783
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	4 cut(s)	663, 681, 857, 1071
BseNI	ACTGG	2 cut(s)	206, 352
BseSI	GKGCMC	2 cut(s)	347, 993
BseXI	GCAGC	1 cut(s)	758
BshFI	GGCC	5 cut(s)	165, 734, 793, 906, 991
BshNI	GGYRCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	417, 709
BslI	CCNNNNNNNGG	4 cut(s)	160, 467, 692, 783
BsmAI	GTCTC	3 cut(s)	197, 502, 808
BsmFI	GGGAC	2 cut(s)	417, 709
BsmI	GAATGC	1 cut(s)	1036
BsnI	GGCC	5 cut(s)	165, 734, 793, 906, 991
Bso31I	GGTCTC	1 cut(s)	502
Bsp120I	GGGCCC	1 cut(s)	989
Bsp1286I	GDGCHC	2 cut(s)	347, 993
Bsp143I	GATC	3 cut(s)	373, 649, 826
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	3 cut(s)	89, 274, 959
BspANI	GGCC	5 cut(s)	165, 734, 793, 906, 991
BspCNI	CTCAG	4 cut(s)	664, 680, 858, 1072
BspLI	GGNNCC	5 cut(s)	33, 684, 991, 992, 1067
BspMAI	CTGCAG	1 cut(s)	419
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	1 cut(s)	821
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	708
BsrI	ACTGG	2 cut(s)	206, 352
BssECI	CCNNGG	4 cut(s)	314, 436, 809, 810
BssMI	GATC	3 cut(s)	373, 649, 826
BssT1I	CCWWGG	2 cut(s)	314, 436
Bst2UI	CCWGG	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	191, 496, 562
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	3 cut(s)	226, 242, 1036
BstDEI	CTNAG	6 cut(s)	127, 667, 672, 866, 1080, 1215
BstDSI	CCRYGG	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	690
BstF5I	GGATG	3 cut(s)	624, 703, 942
BstKTI	GATC	3 cut(s)	376, 652, 829
BstMAI	GTCTC	3 cut(s)	197, 502, 808
BstMBI	GATC	3 cut(s)	373, 649, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 256, 997, 1031
BstNI	CCWGG	1 cut(s)	811
BstSCI	CCNGG	2 cut(s)	160, 809
BstSFI	CTRYAG	1 cut(s)	415
BstSLI	GKGCMC	2 cut(s)	347, 993
BstV1I	GCAGC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	955
BsuRI	GGCC	5 cut(s)	165, 734, 793, 906, 991
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	3 cut(s)	624, 703, 942
BtsIMutI	CAGTG	2 cut(s)	345, 365
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	226, 242, 1036
CaiI	CAGNNNCTG	1 cut(s)	1207
Cfr13I	GGNCC	6 cut(s)	163, 526, 682, 989, 990, 1204
Csp6I	GTAC	1 cut(s)	38
CspCI	CAANNNNNGTGG	2 cut(s)	504, 539
CviAII	CATG	3 cut(s)	409, 437, 1073
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	6 cut(s)	127, 667, 672, 866, 1080, 1215
DpnI	GATC	3 cut(s)	375, 651, 828
DpnII	GATC	3 cut(s)	373, 649, 826
EaeI	YGGCCR	1 cut(s)	904
Eco130I	CCWWGG	2 cut(s)	314, 436
Eco24I	GRGCYC	1 cut(s)	993
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	3 cut(s)	526, 682, 1204
EcoNI	CCTNNNNNAGG	1 cut(s)	690
EcoO109I	RGGNCCY	3 cut(s)	989, 990, 1204
EcoRII	CCWGG	1 cut(s)	809
EcoT14I	CCWWGG	2 cut(s)	314, 436
EcoT38I	GRGCYC	1 cut(s)	993
ErhI	CCWWGG	2 cut(s)	314, 436
FaeI	CATG	3 cut(s)	412, 440, 1076
FalI	AAGNNNNNCTT	2 cut(s)	1118, 1150
FaqI	GGGAC	2 cut(s)	417, 709
FatI	CATG	3 cut(s)	408, 436, 1072
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	3 cut(s)	631, 690, 949
FriOI	GRGCYC	1 cut(s)	993
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	2 cut(s)	47, 585
GluI	GCNGC	1 cut(s)	747
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	5 cut(s)	165, 734, 793, 906, 991
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	412, 440, 1076
HindIII	AAGCTT	2 cut(s)	764, 941
HinfI	GANTC	8 cut(s)	53, 112, 355, 441, 550, 568, 665, 1160
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	577, 907
Hpy166II	GTNNAC	5 cut(s)	40, 345, 515, 558, 1016
Hpy188I	TCNGA	4 cut(s)	446, 502, 573, 1180
Hpy188III	TCNNGA	4 cut(s)	170, 211, 371, 529
Hpy8I	GTNNAC	5 cut(s)	40, 345, 515, 558, 1016
HpyAV	CCTTC	8 cut(s)	126, 176, 206, 686, 773, 866, 980, 1079
HpyCH4III	ACNGT	3 cut(s)	191, 496, 562
HpyCH4IV	ACGT	1 cut(s)	1053
HpyCH4V	TGCA	9 cut(s)	4, 182, 240, 345, 417, 544, 599, 746, 1044
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 256, 997, 1031
HpyF3I	CTNAG	6 cut(s)	127, 667, 672, 866, 1080, 1215
HpySE526I	ACGT	1 cut(s)	1053
Hsp92II	CATG	3 cut(s)	412, 440, 1076
Kzo9I	GATC	3 cut(s)	373, 649, 826
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	4 cut(s)	259, 712, 733, 946
MaeI	CTAG	2 cut(s)	47, 585
MaeII	ACGT	1 cut(s)	1053
MaeIII	GTNAC	2 cut(s)	772, 1085
MalI	GATC	3 cut(s)	375, 651, 828
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	3 cut(s)	373, 649, 826
MboII	GAAGA	4 cut(s)	93, 300, 559, 1135
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	2 cut(s)	347, 993
MlsI	TGGCCA	1 cut(s)	906
MluCI	AATT	4 cut(s)	60, 296, 382, 841
MluNI	TGGCCA	1 cut(s)	906
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	7 cut(s)	31, 164, 629, 667, 745, 1075, 1201
Mox20I	TGGCCA	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	906
MseI	TTAA	2 cut(s)	186, 945
Msp20I	TGGCCA	1 cut(s)	906
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	162, 811
Mva1269I	GAATGC	1 cut(s)	1036
MvaI	CCWGG	1 cut(s)	811
MwoI	GCNNNNNNNGC	4 cut(s)	230, 256, 997, 1031
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	373, 649, 826
NlaIII	CATG	3 cut(s)	412, 440, 1076
NlaIV	GGNNCC	5 cut(s)	33, 684, 991, 992, 1067
NmuCI	GTSAC	1 cut(s)	1085
PasI	CCCWGGG	1 cut(s)	810
PctI	GAATGC	1 cut(s)	1036
PfeI	GAWTC	7 cut(s)	53, 112, 355, 441, 550, 568, 1160
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	1204
Psp5II	RGGWCCY	1 cut(s)	1204
Psp6I	CCWGG	1 cut(s)	809
PspGI	CCWGG	1 cut(s)	809
PspN4I	GGNNCC	5 cut(s)	33, 684, 991, 992, 1067
PspOMI	GGGCCC	1 cut(s)	989
PspPI	GGNCC	6 cut(s)	163, 526, 682, 989, 990, 1204
PspPPI	RGGWCCY	1 cut(s)	1204
PstI	CTGCAG	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	1207
PsuI	RGATCY	1 cut(s)	649
PsyI	GACNNNGTC	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	186, 945
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	3 cut(s)	373, 649, 826
Sau96I	GGNCC	6 cut(s)	163, 526, 682, 989, 990, 1204
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	2 cut(s)	162, 811
SduI	GDGCHC	2 cut(s)	347, 993
SfaNI	GCATC	4 cut(s)	259, 712, 733, 946
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	3 cut(s)	526, 682, 1204
SmlI	CTYRAG	2 cut(s)	1093, 1192
SmoI	CTYRAG	2 cut(s)	1093, 1192
Sse9I	AATT	4 cut(s)	60, 296, 382, 841
SsiI	CCGC	3 cut(s)	89, 274, 959
SspMI	CTAG	2 cut(s)	47, 585
StyD4I	CCNGG	2 cut(s)	160, 809
StyI	CCWWGG	2 cut(s)	314, 436
TaaI	ACNGT	3 cut(s)	191, 496, 562
TaiI	ACGT	1 cut(s)	1056
TaqI	TCGA	4 cut(s)	13, 286, 1144, 1158
TasI	AATT	4 cut(s)	60, 296, 382, 841
TfiI	GAWTC	7 cut(s)	53, 112, 355, 441, 550, 568, 1160
Tru1I	TTAA	2 cut(s)	186, 945
Tru9I	TTAA	2 cut(s)	186, 945
TscAI	CASTG	2 cut(s)	352, 365
TseFI	GTSAC	1 cut(s)	1085
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	1085
TspDTI	ATGAA	3 cut(s)	552, 953, 1061
TspRI	CASTG	2 cut(s)	352, 365
Tth111I	GACNNNGTC	1 cut(s)	524
VneI	GTGCAC	1 cut(s)	343
VpaK11BI	GGWCC	3 cut(s)	526, 682, 1204
XagI	CCTNNNNNAGG	1 cut(s)	690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XspI	CTAG	2 cut(s)	47, 585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.