Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009867

Physical Location & Seq

Genomic Coordinates Forward (+)

10625000 .. 10627135

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCTTACCTTCTTCGCTCCGATCCGGTTTCACGAATCCACCCAGAACCTCAATCTCTAACCTCTTTCGACCACTTCGATCTCCTCCCTGACTCTCTCCTCCTCTTAATCTTCGACAAAGTCGCCGACGTCAAAGATCTCGGCCGTTGCTGCATCGTATCTCGTAGATTCCACTCTCTCGTCCCTTTCGTTGAGAACGTTCTCGTCCGTGTTGATTGTGTTATCTCCGACGATGATTCCTCTTCCTCCGACGAGAATCATCGATTCTCTTTAAACACTGCATCGATCTCAGACGCCGGCGGTGCTGGTGGCTCCTTCTCCGCCTTGTTCCGTCTCGTATTCGCTCCAATTTTCAAACCGTTTCAAATGTTAGGGCAGATTCTAGGACCGAAACGATCGTCTTCTTCGTTCGATGCGTCGTTTTCAGCGATTAACGATGAGATCGGCGTAACGCATCACTCTCCGACTCAGGTATTGAAAAACTTCGGTGAGATTCGGTTTTTGAAAATCGAACTTCCTACAGGAGAATTAGGTATCGAGGATGGTATATTGTTGAAATGGAGAGCTGATTTTGGATCTACGCTTGATAATTGTATGATACTTGGAGCATCTTCGGTGATTCAGTCGAATTCAGTGAAGAATCATGAGAATTCGGTTGATGAAGACAATGGTAACATACCTGAGTCGTTTTACACTAATGGAGGGCTTAAGCTTCGTGTGGTTTGGACGATAAGCTCGTTAATCGCTGCGTCGGCTCGGCATTATCTTCTTCAACCGATTATCAATGAGCATAAGTCGTTAGATCGTTTGGTTTTATCTGATGCTGATGGGCAAGGTGTTTTGTGTATGAATAGAGAACAGCTTGAAGAGCTTAGAGTTACTCCTTTATCAGCTTCTTCTGCTTCGAAGAGGACGCTTGTGCCTGCGTTGAATATGAGGTTGTGGTATGCTCCGGAATTGGATTTACCTGATGGGACGGTGTTGAAAGGTGCGACATTGGTGGCTATTAGGCCGAGTGAGTCTAAGAAGGAAGTTTGTGATGCTTCTTGGTTGTCTGATGCTTTTGAGGAACCGTTTGGGACTGTGGCGAAGATGTTGATCAAGAGGAGGACTTATTGTTTGGAGATGAACTCGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0006810 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009914 GO:0009987 GO:0010033 GO:0010286 GO:0010817 GO:0023052 GO:0030054 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

379

Amino Acids

41.84

Weight (kDa)

5.34

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	27 - 61	2.1e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30200 AT1G30200 AT4G18380 AT4G18380 AT5G46170
fragaria_vesca	FvH4_3g05230
malus_domestica	MD05G1281200.v1.1 MD10G1259600.v1.1
prunus_persica	Prupe.4G083400_v2.0.a1
pyrus_communis	pycom05g26130 pycom10g21600
rosa_chinensis	RchiOBHm_Chr5g0014481
rosa_laevigata	RLG00000032115
rosa_multiflora	Rmu_sc0017039.1_g000005
rosa_roxburghii	Rroxscaffold_1G00062070
rosa_rugosa	Rorug05G0018400
rosa_samantha	Rh5AG113700 Rh5BG110300 Rh5CG122200 Rh5DG109600
rosa_wichuraiana	Rw5G009860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	952
AciI	CCGC	2 cut(s)	300, 321
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	2 cut(s)	17, 583
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	628, 649
AcyI	GRCGYC	2 cut(s)	129, 294
AflII	CTTAAG	1 cut(s)	707
AgsI	TTSAA	9 cut(s)	355, 365, 478, 505, 556, 773, 866, 931, 985
AluBI	AGCT	6 cut(s)	566, 712, 735, 862, 871, 893
AluI	AGCT	6 cut(s)	566, 712, 735, 862, 871, 893
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	2 cut(s)	17, 583
Aor13HI	TCCGGA	1 cut(s)	952
AoxI	GGCC	2 cut(s)	142, 1010
ApeKI	GCWGC	2 cut(s)	150, 746
ApoI	RAATTY	2 cut(s)	628, 649
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 415, 1102, 1134
Asp700I	GAANNNNTTC	2 cut(s)	482, 1133
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	500, 628
AsuII	TTCGAA	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	393, 669
BbvI	GCAGC	2 cut(s)	137, 733
BccI	CCATC	3 cut(s)	536, 821, 965
BceAI	ACGGC	1 cut(s)	129
BclI	TGATCA	1 cut(s)	1098
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	519
BfrI	CTTAAG	1 cut(s)	707
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	151, 747
BlsI	GCNGC	2 cut(s)	152, 748
Bme18I	GGWCC	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	313, 1071
BmsI	GCATC	8 cut(s)	162, 290, 403, 463, 617, 811, 1030, 1048
BpiI	GAAGAC	2 cut(s)	393, 669
BplI	GAGNNNNNCTC	1 cut(s)	1115
Bpu14I	TTCGAA	1 cut(s)	905
Bsa29I	ATCGAT	2 cut(s)	262, 284
BsaBI	GATNNNNATC	1 cut(s)	1097
BsaHI	GRCGYC	2 cut(s)	129, 294
BsaWI	WCCGGW	2 cut(s)	25, 952
Bse118I	RCCGGY	1 cut(s)	296
Bse8I	GATNNNNATC	1 cut(s)	1097
BseAI	TCCGGA	1 cut(s)	952
BseCI	ATCGAT	2 cut(s)	262, 284
BseGI	GGATG	1 cut(s)	547
BseJI	GATNNNNATC	1 cut(s)	1097
BseMII	CTCAG	3 cut(s)	303, 482, 672
BseRI	GAGGAG	4 cut(s)	74, 89, 92, 1120
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	2 cut(s)	137, 733
Bsh1285I	CGRYCG	2 cut(s)	145, 398
BshFI	GGCC	2 cut(s)	144, 1012
BshVI	ATCGAT	2 cut(s)	262, 284
BsiEI	CGRYCG	2 cut(s)	145, 398
BsiSI	CCGG	3 cut(s)	26, 297, 953
BslFI	GGGAC	3 cut(s)	167, 988, 1093
BsmAI	GTCTC	1 cut(s)	338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	3 cut(s)	167, 988, 1093
BsnI	GGCC	2 cut(s)	144, 1012
Bsp119I	TTCGAA	1 cut(s)	905
Bsp13I	TCCGGA	1 cut(s)	952
Bsp143I	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
BspACI	CCGC	2 cut(s)	300, 321
BspANI	GGCC	2 cut(s)	144, 1012
BspCNI	CTCAG	3 cut(s)	302, 481, 673
BspDI	ATCGAT	2 cut(s)	262, 284
BspEI	TCCGGA	1 cut(s)	952
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	313, 1071
BspPI	GGATC	2 cut(s)	17, 583
BspQI	GCTCTTC	1 cut(s)	861
BspT104I	TTCGAA	1 cut(s)	905
BspTI	CTTAAG	1 cut(s)	707
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
BssNI	GRCGYC	2 cut(s)	129, 294
Bst4CI	ACNGT	4 cut(s)	360, 979, 1074, 1084
Bst6I	CTCTTC	3 cut(s)	247, 861, 902
BstACI	GRCGYC	2 cut(s)	129, 294
BstAFI	CTTAAG	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	905
BstC8I	GCNNGC	2 cut(s)	298, 924
BstDEI	CTNAG	5 cut(s)	289, 468, 681, 872, 1023
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	9 cut(s)	25, 82, 139, 288, 398, 444, 578, 805, 1101
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
BstMCI	CGRYCG	2 cut(s)	145, 398
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 302, 752, 868, 899
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	137, 733
BstV2I	GAAGAC	2 cut(s)	393, 669
BstX2I	RGATCY	2 cut(s)	136, 575
BstYI	RGATCY	2 cut(s)	136, 575
BstZI	CGGCCG	1 cut(s)	142
Bsu15I	ATCGAT	2 cut(s)	262, 284
BsuRI	GGCC	2 cut(s)	144, 1012
BsuTUI	ATCGAT	2 cut(s)	262, 284
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	2 cut(s)	276, 639
Cac8I	GCNNGC	2 cut(s)	298, 924
CciI	TCATGA	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	386
ClaI	ATCGAT	2 cut(s)	262, 284
CseI	GACGC	4 cut(s)	302, 405, 738, 922
CviAII	CATG	1 cut(s)	644
DdeI	CTNAG	5 cut(s)	289, 468, 681, 872, 1023
DpnI	GATC	9 cut(s)	24, 81, 138, 287, 397, 443, 577, 804, 1100
DpnII	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
DraI	TTTAAA	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	247, 861, 902
EarI	CTCTTC	3 cut(s)	247, 861, 902
EciI	GGCGGA	1 cut(s)	310
EclXI	CGGCCG	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	386
Eco52I	CGGCCG	1 cut(s)	142
EcoRI	GAATTC	2 cut(s)	628, 649
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	1 cut(s)	647
FaiI	YATR	8 cut(s)	548, 596, 645, 677, 792, 848, 935, 948
FaqI	GGGAC	3 cut(s)	167, 988, 1093
FatI	CATG	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	1098
Fnu4HI	GCNGC	2 cut(s)	151, 747
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	2 cut(s)	151, 747
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	2 cut(s)	151, 747
HaeIII	GGCC	2 cut(s)	144, 1012
HapII	CCGG	3 cut(s)	26, 297, 953
HgaI	GACGC	4 cut(s)	302, 405, 738, 922
Hin1I	GRCGYC	2 cut(s)	129, 294
Hin1II	CATG	1 cut(s)	647
HindIII	AAGCTT	1 cut(s)	710
HpaII	CCGG	3 cut(s)	26, 297, 953
HphI	GGTGA	2 cut(s)	500, 628
Hpy188I	TCNGA	8 cut(s)	22, 229, 250, 292, 465, 820, 1057, 1139
Hpy188III	TCNNGA	4 cut(s)	33, 644, 953, 1102
Hpy99I	CGWCG	5 cut(s)	131, 233, 254, 421, 754
HpyAV	CCTTC	3 cut(s)	20, 325, 1021
HpyCH4III	ACNGT	4 cut(s)	360, 979, 1074, 1084
HpyCH4IV	ACGT	2 cut(s)	129, 198
HpyCH4V	TGCA	2 cut(s)	153, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 302, 752, 868, 899
HpyF3I	CTNAG	5 cut(s)	289, 468, 681, 872, 1023
HpySE526I	ACGT	2 cut(s)	129, 198
Hsp92I	GRCGYC	2 cut(s)	129, 294
Hsp92II	CATG	1 cut(s)	647
Kpn2I	TCCGGA	1 cut(s)	952
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	1098
Kzo9I	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
LguI	GCTCTTC	1 cut(s)	861
LmnI	GCTCC	5 cut(s)	23, 317, 349, 605, 955
Lsp1109I	GCAGC	2 cut(s)	137, 733
LweI	GCATC	8 cut(s)	162, 290, 403, 463, 617, 811, 1030, 1048
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	2 cut(s)	129, 198
MaeIII	GTNAC	3 cut(s)	448, 671, 877
MalI	GATC	9 cut(s)	24, 81, 138, 287, 397, 443, 577, 804, 1100
MboI	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
MflI	RGATCY	2 cut(s)	136, 575
MluCI	AATT	6 cut(s)	348, 527, 589, 628, 649, 956
MlyI	GAGTC	4 cut(s)	86, 460, 692, 1028
MmeI	TCCRAC	3 cut(s)	252, 273, 488
MreI	CGCCGGCG	1 cut(s)	296
MroI	TCCGGA	1 cut(s)	952
MroNI	GCCGGC	1 cut(s)	296
MroXI	GAANNNNTTC	2 cut(s)	482, 1133
MseI	TTAA	5 cut(s)	107, 272, 432, 708, 740
MspCI	CTTAAG	1 cut(s)	707
MspI	CCGG	3 cut(s)	26, 297, 953
MwoI	GCNNNNNNNGC	5 cut(s)	150, 302, 752, 868, 899
NaeI	GCCGGC	1 cut(s)	298
NdeII	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	1 cut(s)	647
NlaIV	GGNNCC	2 cut(s)	313, 1071
NmeAIII	GCCGAG	3 cut(s)	120, 736, 1038
NspV	TTCGAA	1 cut(s)	905
PagI	TCATGA	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	861
PcsI	WCGNNNNNNNCGW	7 cut(s)	75, 186, 195, 404, 413, 425, 734
PdiI	GCCGGC	1 cut(s)	298
PdmI	GAANNNNTTC	2 cut(s)	482, 1133
PfeI	GAWTC	9 cut(s)	36, 168, 236, 256, 264, 379, 493, 619, 640
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	152, 748
Ple19I	CGATCG	1 cut(s)	398
PleI	GAGTC	4 cut(s)	86, 460, 691, 1027
PpsI	GAGTC	4 cut(s)	86, 460, 691, 1027
Psp1406I	AACGTT	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	313, 1071
PspPI	GGNCC	1 cut(s)	386
PsuI	RGATCY	2 cut(s)	136, 575
PsyI	GACNNNGTC	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	861
SaqAI	TTAA	5 cut(s)	107, 272, 432, 708, 740
SatI	GCNGC	2 cut(s)	151, 747
Sau3AI	GATC	9 cut(s)	22, 79, 136, 285, 395, 441, 575, 802, 1098
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	4 cut(s)	86, 460, 692, 1028
SfaNI	GCATC	8 cut(s)	162, 290, 403, 463, 617, 811, 1030, 1048
SfcI	CTRYAG	1 cut(s)	519
SfuI	TTCGAA	1 cut(s)	905
SgrAI	CRCCGGYG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	6 cut(s)	348, 527, 589, 628, 649, 956
SsiI	CCGC	2 cut(s)	300, 321
SspMI	CTAG	1 cut(s)	383
TaaI	ACNGT	4 cut(s)	360, 979, 1074, 1084
TaiI	ACGT	2 cut(s)	132, 201
TaqII	GACCGA	1 cut(s)	403
TasI	AATT	6 cut(s)	348, 527, 589, 628, 649, 956
TfiI	GAWTC	9 cut(s)	36, 168, 236, 256, 264, 379, 493, 619, 640
Tru1I	TTAA	5 cut(s)	107, 272, 432, 708, 740
Tru9I	TTAA	5 cut(s)	107, 272, 432, 708, 740
TscAI	CASTG	2 cut(s)	283, 639
TseI	GCWGC	2 cut(s)	150, 746
TspDTI	ATGAA	2 cut(s)	675, 863
TspGWI	ACGGA	2 cut(s)	197, 320
TspRI	CASTG	2 cut(s)	283, 639
Tth111I	GACNNNGTC	1 cut(s)	119
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	2 cut(s)	628, 649
XmnI	GAANNNNTTC	2 cut(s)	482, 1133
XspI	CTAG	1 cut(s)	383
ZraI	GACGTC	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.