FvH4_3g05230

F-box protein At5g46170-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
3026786 .. 3029205
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05230.t1

Sequence Viewer

Length: 1209 bp
ATGCCATCCACCACCACCGCAGATCTACCCATGTCCTCCTCCTTCTACCCAGATCTCACCTCCTCCTCCTCCTCCTCCTCCCGTGTCTACCCCGAACCCTCCGACCACTTCGACCGCCTCCCCGACTCCCTCCTCCTCCTCGTCTTCAACAAGATCGCCGACGTCAAGGCCCTCGGCCGCTGCTGCGTCGTCTCCCGCCGCTTCCACTCCCTCGTCCCTCAAGTCGACACCGTCCTCGTCCGCGTCGACTGCGTCATCTCCGACGACGACTCCACCTCATCCTCCTCCTCCTCCTCCCCTTCCTCCTCCGACAAATCCCGCGCTCCTTTCTCCTCCCTCGTCCGCCTCGTCCTCGGCGGCATTGTCAAGCCCCTCCAGGCCCTCGGCCAGTTCCTCGGCCCCCGCCGCTCCTCCTCCTCCCTCGCCGTCGGCACCGCCGACGAAACCGCCGCCGAGACGGACCAGGCCGGCGGCGTCACGCACCACTCGCCCACGCAGGTGCTCAAGAATTTCAACGAGATTCGGCTCCTCCGGATCGAGCTTCCCTCCGGCGAGCTCGGCATCGACGACGGAGTCTTGCTCAAATGGAGGGCCGATTTCGGGTCGACTCTGGACAACTGCGTCATTCTCGGAGCTTCCTCTGTGATTCAGCCCGGTCCGAATCACAAGCCCAACGACGTCGCCGTCTCCGGCGGCGACGGGGTCTGCGCCGCTAACGCCGAAGATAACGGGAGCATACCGGACTCGTTCTACACAAACGGCGGGCTGAAACTGAGGGTGGTGTGGACTATTAGCTCGCTGATCGCGGCGTCTGCGCGGCATTACTTGCTTCAGCCGATCATTTCGGAGCACAAGACGTTGGACAGCTTGGTGCTGACGGATGCCGACGGGCAGGGGGTGCTGTATATGAACAGAGAGCAGCTTGAGGAGTTGAGGGTGAAGCCATTGTCGGCTTCTTCTGCCTCCAAGAGGACGCTGGTGCCGGCACTCAATATGAGGCTCTGGTACGCGCCGCAGTTGGAATTGCCTGATGGGGTTGTGCTTAAGGGAGCTACTTTGGTTGCTATTCGCCCCAGTGAGCAGTCCAACCCGAAGAAGGAGGTGTCCGATCTCTCTTGGGTTTCGACTGCATTTGAGGAGCCGTATGGGACTGCTGCCAAGATGCTGGTGAAGAGAAGAACTTACTGCCTTGAGATGAACTCGTTCTGA

Protein Analysis

403

Amino Acids

43.22

Weight (kDa)

5.71

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 37 - 72 3.3e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009867)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
AasI GACNNNNNNGTC 3 cut(s) 572, 620, 683
AatII GACGTC 2 cut(s) 165, 681
Acc36I ACCTGC 1 cut(s) 487
AccB1I GGYRCC 2 cut(s) 431, 979
AccBSI CCGCTC 1 cut(s) 408
AccI GTMKAC 4 cut(s) 87, 225, 246, 605
AccII CGCG 5 cut(s) 243, 321, 806, 817, 1010
AccIII TCCGGA 1 cut(s) 531
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 2 cut(s) 175, 385
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 815
AcyI GRCGYC 4 cut(s) 162, 474, 678, 809
AfaI GTAC 1 cut(s) 1007
AfiI CCNNNNNNNGG 3 cut(s) 600, 969, 1096
AflII CTTAAG 1 cut(s) 1043
AgsI TTSAA 2 cut(s) 148, 514
AjnI CCWGG 2 cut(s) 375, 462
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 7 cut(s) 541, 556, 635, 795, 867, 922, 1052
AluI AGCT 7 cut(s) 541, 556, 635, 795, 867, 922, 1052
Alw21I GWGCWC 3 cut(s) 504, 558, 852
Alw26I GTCTC 3 cut(s) 196, 449, 691
AlwI GGATC 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 531
AoxI GGCC 7 cut(s) 168, 175, 378, 385, 397, 465, 591
ApeKI GCWGC 4 cut(s) 180, 183, 919, 1154
ApoI RAATTY 1 cut(s) 508
Asp700I GAANNNNTTC 1 cut(s) 1202
AspLEI GCGC 4 cut(s) 323, 710, 817, 1012
AspS9I GGNCC 6 cut(s) 169, 379, 398, 460, 591, 656
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 3 cut(s) 49, 949, 1180
AvaII GGWCC 2 cut(s) 460, 656
BanI GGYRCC 2 cut(s) 431, 979
BanII GRGCYC 1 cut(s) 558
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 3 cut(s) 504, 558, 852
BbvI GCAGC 4 cut(s) 167, 170, 931, 1141
BccI CCATC 2 cut(s) 13, 1025
BceAI ACGGC 4 cut(s) 410, 668, 775, 1126
BciT130I CCWGG 2 cut(s) 377, 464
BcnI CCSGG 1 cut(s) 654
BcoDI GTCTC 3 cut(s) 196, 449, 691
BfrI CTTAAG 1 cut(s) 1043
BfuAI ACCTGC 1 cut(s) 487
BglII AGATCT 2 cut(s) 22, 52
Bme1390I CCNGG 3 cut(s) 377, 464, 654
Bme18I GGWCC 2 cut(s) 460, 656
BmgT120I GGNCC 6 cut(s) 169, 379, 398, 460, 591, 656
BmiI GGNNCC 5 cut(s) 400, 433, 527, 981, 1140
BmrFI CCNGG 3 cut(s) 377, 464, 654
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 3 cut(s) 570, 871, 1152
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 1 cut(s) 136
BplI GAGNNNNNCTC 5 cut(s) 530, 562, 564, 596, 1184
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 3 cut(s) 204, 488, 944
BpuMI CCSGG 1 cut(s) 654
BsaHI GRCGYC 4 cut(s) 162, 474, 678, 809
BsaJI CCNNGG 4 cut(s) 172, 352, 382, 394
BsaWI WCCGGW 2 cut(s) 531, 739
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 3 cut(s) 600, 969, 1096
Bse118I RCCGGY 2 cut(s) 467, 982
Bse1I ACTGG 2 cut(s) 388, 1074
BseAI TCCGGA 1 cut(s) 531
BseBI CCWGG 2 cut(s) 377, 464
BseDI CCNNGG 4 cut(s) 172, 352, 382, 394
BseGI GGATG 3 cut(s) 5, 278, 886
BseLI CCNNNNNNNGG 3 cut(s) 600, 969, 1096
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 2 cut(s) 388, 1074
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 4 cut(s) 167, 170, 931, 1141
Bsh1236I CGCG 5 cut(s) 243, 321, 806, 817, 1010
Bsh1285I CGRYCG 2 cut(s) 115, 178
BshFI GGCC 7 cut(s) 170, 177, 380, 387, 399, 467, 593
BshNI GGYRCC 2 cut(s) 431, 979
BsiEI CGRYCG 2 cut(s) 115, 178
BsiHKAI GWGCWC 3 cut(s) 504, 558, 852
BsiSI CCGG 7 cut(s) 468, 532, 549, 654, 690, 740, 983
BslFI GGGAC 2 cut(s) 200, 1162
BslI CCNNNNNNNGG 3 cut(s) 600, 969, 1096
BsmAI GTCTC 3 cut(s) 196, 449, 691
BsmBI CGTCTC 3 cut(s) 196, 449, 691
BsmFI GGGAC 2 cut(s) 200, 1162
BsnI GGCC 7 cut(s) 170, 177, 380, 387, 399, 467, 593
Bsp1286I GDGCHC 3 cut(s) 504, 558, 852
Bsp13I TCCGGA 1 cut(s) 531
Bsp143I GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
BspANI GGCC 7 cut(s) 170, 177, 380, 387, 399, 467, 593
BspCNI CTCAG 1 cut(s) 765
BspEI TCCGGA 1 cut(s) 531
BspFNI CGCG 5 cut(s) 243, 321, 806, 817, 1010
BspLI GGNNCC 5 cut(s) 400, 433, 527, 981, 1140
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 2 cut(s) 431, 979
BspTI CTTAAG 1 cut(s) 1043
BsrBI CCGCTC 1 cut(s) 408
BsrFI RCCGGY 2 cut(s) 467, 982
BsrI ACTGG 2 cut(s) 388, 1074
BssAI RCCGGY 2 cut(s) 467, 982
BssECI CCNNGG 4 cut(s) 172, 352, 382, 394
BssMI GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
BssNI GRCGYC 4 cut(s) 162, 474, 678, 809
Bst2UI CCWGG 2 cut(s) 377, 464
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 1166
BstACI GRCGYC 4 cut(s) 162, 474, 678, 809
BstAFI CTTAAG 1 cut(s) 1043
BstAPI GCANNNNNTGC 2 cut(s) 826, 898
BstC8I GCNNGC 5 cut(s) 469, 554, 764, 797, 984
BstDEI CTNAG 1 cut(s) 773
BstENI CCTNNNNNAGG 1 cut(s) 967
BstF5I GGATG 3 cut(s) 5, 278, 886
BstFNI CGCG 5 cut(s) 243, 321, 806, 817, 1010
BstHHI GCGC 4 cut(s) 323, 710, 817, 1012
BstKTI GATC 7 cut(s) 25, 55, 156, 537, 804, 840, 1111
BstMAI GTCTC 3 cut(s) 196, 449, 691
BstMBI GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
BstMCI CGRYCG 2 cut(s) 115, 178
BstNI CCWGG 2 cut(s) 377, 464
BstSCI CCNGG 3 cut(s) 375, 462, 652
BstUI CGCG 5 cut(s) 243, 321, 806, 817, 1010
BstV1I GCAGC 4 cut(s) 167, 170, 931, 1141
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 22, 52
BstXI CCANNNNNNTGG 1 cut(s) 1165
BstYI RGATCY 2 cut(s) 22, 52
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 7 cut(s) 170, 177, 380, 387, 399, 467, 593
BtsCI GGATG 3 cut(s) 5, 278, 886
BtsIMutI CAGTG 1 cut(s) 1081
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 5 cut(s) 469, 554, 764, 797, 984
CfoI GCGC 4 cut(s) 323, 710, 817, 1012
Cfr10I RCCGGY 2 cut(s) 467, 982
Cfr13I GGNCC 6 cut(s) 169, 379, 398, 460, 591, 656
CpoI CGGWCCG 1 cut(s) 656
CseI GACGC 7 cut(s) 175, 232, 241, 463, 610, 798, 982
Csp6I GTAC 1 cut(s) 1006
CspI CGGWCCG 1 cut(s) 656
CviAII CATG 1 cut(s) 31
CviQI GTAC 1 cut(s) 1006
DdeI CTNAG 1 cut(s) 773
DpnI GATC 7 cut(s) 24, 54, 155, 536, 803, 839, 1110
DpnII GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
DrdI GACNNNNNNGTC 3 cut(s) 572, 620, 683
DseDI GACNNNNNNGTC 3 cut(s) 572, 620, 683
EaeI YGGCCR 2 cut(s) 175, 385
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 1166
EarI CTCTTC 1 cut(s) 1166
EciI GGCGGA 1 cut(s) 332
Ecl136II GAGCTC 1 cut(s) 556
EclXI CGGCCG 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 460, 656
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 815
EcoICRI GAGCTC 1 cut(s) 556
EcoNI CCTNNNNNAGG 1 cut(s) 967
EcoO109I RGGNCCY 2 cut(s) 169, 379
EcoRII CCWGG 2 cut(s) 375, 462
EcoT38I GRGCYC 1 cut(s) 558
Esp3I CGTCTC 3 cut(s) 196, 449, 691
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 32, 737, 906, 908, 995, 1146
FaqI GGGAC 2 cut(s) 200, 1162
FatI CATG 1 cut(s) 30
FauI CCCGC 4 cut(s) 203, 326, 410, 755
FblI GTMKAC 4 cut(s) 87, 225, 246, 605
FokI GGATG 2 cut(s) 265, 893
FriOI GRGCYC 1 cut(s) 558
GlaI GCGC 4 cut(s) 322, 709, 816, 1011
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 7 cut(s) 170, 177, 380, 387, 399, 467, 593
HapII CCGG 7 cut(s) 468, 532, 549, 654, 690, 740, 983
HgaI GACGC 7 cut(s) 175, 232, 241, 463, 610, 798, 982
HhaI GCGC 4 cut(s) 323, 710, 817, 1012
Hin1I GRCGYC 4 cut(s) 162, 474, 678, 809
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 4 cut(s) 321, 708, 815, 1010
HinP1I GCGC 4 cut(s) 321, 708, 815, 1010
HincII GTYRAC 3 cut(s) 226, 247, 606
HindII GTYRAC 3 cut(s) 226, 247, 606
HinfI GANTC 8 cut(s) 125, 269, 520, 573, 607, 646, 661, 743
HpaII CCGG 7 cut(s) 468, 532, 549, 654, 690, 740, 983
HphI GGTGA 3 cut(s) 49, 949, 1180
Hpy166II GTNNAC 5 cut(s) 88, 226, 247, 606, 786
Hpy188I TCNGA 8 cut(s) 103, 262, 310, 632, 660, 847, 1108, 1208
Hpy188III TCNNGA 3 cut(s) 505, 532, 611
Hpy8I GTNNAC 5 cut(s) 88, 226, 247, 606, 786
HpyAV CCTTC 3 cut(s) 52, 309, 1090
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 3 cut(s) 162, 678, 857
HpyCH4V TGCA 1 cut(s) 1130
HpyF3I CTNAG 1 cut(s) 773
HpySE526I ACGT 3 cut(s) 162, 678, 857
Hsp92I GRCGYC 4 cut(s) 162, 474, 678, 809
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 4 cut(s) 321, 708, 815, 1010
Kpn2I TCCGGA 1 cut(s) 531
KroI GCCGGC 2 cut(s) 467, 982
KroNI GCCGGC 2 cut(s) 469, 984
Kzo9I GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
LmnI GCTCC 8 cut(s) 328, 413, 531, 632, 732, 847, 1049, 1138
Lsp1109I GCAGC 4 cut(s) 167, 170, 931, 1141
LweI GCATC 3 cut(s) 570, 871, 1152
MaeII ACGT 3 cut(s) 162, 678, 857
MaeIII GTNAC 1 cut(s) 475
MalI GATC 7 cut(s) 24, 54, 155, 536, 803, 839, 1110
MbiI CCGCTC 1 cut(s) 408
MboI GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
MboII GAAGA 6 cut(s) 136, 734, 948, 1105, 1183, 1188
MflI RGATCY 2 cut(s) 22, 52
MhlI GDGCHC 3 cut(s) 504, 558, 852
MluCI AATT 2 cut(s) 508, 1022
MlyI GAGTC 5 cut(s) 119, 263, 582, 601, 737
MmeI TCCRAC 6 cut(s) 126, 285, 333, 840, 999, 1110
MroI TCCGGA 1 cut(s) 531
MroNI GCCGGC 2 cut(s) 467, 982
MroXI GAANNNNTTC 1 cut(s) 1202
MseI TTAA 1 cut(s) 1044
MslI CAYNNNNRTG 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 180
MspCI CTTAAG 1 cut(s) 1043
MspI CCGG 7 cut(s) 468, 532, 549, 654, 690, 740, 983
MspR9I CCNGG 3 cut(s) 377, 464, 654
MvaI CCWGG 2 cut(s) 377, 464
MvnI CGCG 5 cut(s) 243, 321, 806, 817, 1010
NaeI GCCGGC 2 cut(s) 469, 984
NciI CCSGG 1 cut(s) 654
NdeII GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
NgoMIV GCCGGC 2 cut(s) 467, 982
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 5 cut(s) 400, 433, 527, 981, 1140
NmeAIII GCCGAG 6 cut(s) 153, 333, 363, 375, 478, 537
NmuCI GTSAC 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 5 cut(s) 243, 345, 435, 564, 681
PdiI GCCGGC 2 cut(s) 469, 984
PdmI GAANNNNTTC 1 cut(s) 1202
PfeI GAWTC 3 cut(s) 520, 646, 661
PflFI GACNNNGTC 4 cut(s) 230, 251, 572, 701
PleI GAGTC 5 cut(s) 119, 263, 581, 601, 737
PpsI GAGTC 5 cut(s) 119, 263, 581, 601, 737
Psp124BI GAGCTC 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 375, 462
PspGI CCWGG 2 cut(s) 375, 462
PspN4I GGNNCC 5 cut(s) 400, 433, 527, 981, 1140
PspPI GGNCC 6 cut(s) 169, 379, 398, 460, 591, 656
PsuI RGATCY 2 cut(s) 22, 52
PsyI GACNNNGTC 4 cut(s) 230, 251, 572, 701
RsaI GTAC 1 cut(s) 1007
RsaNI GTAC 1 cut(s) 1006
RseI CAYNNNNRTG 1 cut(s) 497
Rsr2I CGGWCCG 1 cut(s) 656
RsrII CGGWCCG 1 cut(s) 656
SacI GAGCTC 1 cut(s) 558
SalI GTCGAC 3 cut(s) 224, 245, 604
SaqAI TTAA 1 cut(s) 1044
Sau3AI GATC 7 cut(s) 22, 52, 153, 534, 801, 837, 1108
Sau96I GGNCC 6 cut(s) 169, 379, 398, 460, 591, 656
SchI GAGTC 5 cut(s) 119, 263, 582, 601, 737
ScrFI CCNGG 3 cut(s) 377, 464, 654
SduI GDGCHC 3 cut(s) 504, 558, 852
SfaNI GCATC 3 cut(s) 570, 871, 1152
SinI GGWCC 2 cut(s) 460, 656
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 5 cut(s) 219, 503, 923, 1043, 1190
SmoI CTYRAG 5 cut(s) 219, 503, 923, 1043, 1190
Sse9I AATT 2 cut(s) 508, 1022
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 375, 462, 652
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 3 cut(s) 165, 681, 860
TaqI TCGA 7 cut(s) 111, 225, 246, 537, 564, 605, 1124
TasI AATT 2 cut(s) 508, 1022
TfiI GAWTC 3 cut(s) 520, 646, 661
Tru1I TTAA 1 cut(s) 1044
Tru9I TTAA 1 cut(s) 1044
TscAI CASTG 1 cut(s) 1081
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 4 cut(s) 180, 183, 919, 1154
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 3 cut(s) 473, 585, 893
TspRI CASTG 1 cut(s) 1081
Tth111I GACNNNGTC 4 cut(s) 230, 251, 572, 701
Vha464I CTTAAG 1 cut(s) 1043
VpaK11BI GGWCC 2 cut(s) 460, 656
XagI CCTNNNNNAGG 1 cut(s) 967
XapI RAATTY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 973
XmiI GTMKAC 4 cut(s) 87, 225, 246, 605
XmnI GAANNNNTTC 1 cut(s) 1202
ZraI GACGTC 2 cut(s) 163, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.