AT4G18380

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009867
Physical Location & Seq
Forward (+)
10157807 .. 10159748
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18380.1

Sequence Viewer

Length: 1143 bp
ATGGCGATAATTCTCCGTTCATCAGATCCACTCCTCTCACGAATCCATCCGGAACCACAAGAAATCGACCACTTCGATAACCTCCCAGACTCAATCCTCCTCCTCATCTTCAACAACATCGGCGACGTCAAAGCCTTAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATTCCTTAATCCCTCAAGTCGAAAATGTCTTCGTTCGTGTCGATTGCGTTATCTCCGACGACGATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGCCTCCGCCGCTTCTCCTTTCTCCGCCATTTTCCGTCTCGTCTTCAAGCCGTTACAAGCTTTGGGACAGTTCCTTAAACGCTCAGGTTCTTCTTCTCTTCCTTCAGGATCATCTCCTTCTTCGTTGTTGATTAGTGGTGGTGATGATGGAGAGATTGAACAAGGAGGTGTAACGCATCATTCACCGACTCAGGTTTTGAAAAACTTCGATGAGATTAAGTTTCTTAAAATCGAGCTTCCTAGTGGTGAATTAGGGATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCTACTCTCGAGAATTGTGTGATCCTCGGTGCTTCCTCTGTGATTCCGCCGACGAATTCGGATAAGACGGAAGCGAGTTCGGCTCCCGTCGCGGCGGTGGAAGATAATGGAAGTATACCGGAATCGTTTTATACAAACGGAGGGCTTAAGCTACGTGTTGTATGGACTATAAGCTCTTTGATTGCTGCTTCCGCTAGACATTACTTGTTGCAACCGATTATAGCAGAGCATAAGACGCTTGATAGTTTAGTGCTTACTGATGTTGATGGTCAAGGAGTTTTGTGTATGAATCGAGATCAGTTAGAGGAATTGAGAGTGAAACCATTGTCAGCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTGAATATGAGACTTTGGTATGCTCCTTCTTTGGAATTGCCTGATGGGACTGTGTTGAAGGGAGCTACGCTTGTGGCGATTAGGCCGAGTGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTGGGTTTCTTCTGCGTTTGATGAGCCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGGACTTATTGTCTTGAAATGAATTCGTTCTAA

Protein Analysis

380

Amino Acids

41.16

Weight (kDa)

5.47

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 25 - 60 1.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30200 AT1G30200 AT4G18380 AT4G18380 AT5G46170
fragaria_vesca FvH4_3g05230
malus_domestica MD05G1281200.v1.1 MD10G1259600.v1.1
prunus_persica Prupe.4G083400_v2.0.a1
pyrus_communis pycom05g26130 pycom10g21600
rosa_chinensis RchiOBHm_Chr5g0014481
rosa_laevigata RLG00000032115
rosa_multiflora Rmu_sc0017039.1_g000005
rosa_roxburghii Rroxscaffold_1G00062070
rosa_rugosa Rorug05G0018400
rosa_samantha Rh5AG113700 Rh5BG110300 Rh5CG122200 Rh5DG109600
rosa_wichuraiana Rw5G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
Acc36I ACCTGC 1 cut(s) 934
AccI GTMKAC 1 cut(s) 679
AccII CGCG 1 cut(s) 656
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 8 cut(s) 267, 273, 276, 291, 611, 656, 659, 756
AclWI GGATC 4 cut(s) 20, 258, 382, 580
AcsI RAATTY 3 cut(s) 557, 619, 1132
AcuI CTGAAG 2 cut(s) 354, 885
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 924
AflII CTTAAG 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 8 cut(s) 112, 313, 425, 466, 544, 934, 988, 1127
AhdI GACNNNNNGTC 1 cut(s) 1119
AluBI AGCT 9 cut(s) 326, 502, 554, 715, 738, 896, 905, 995, 1088
AluI AGCT 9 cut(s) 326, 502, 554, 715, 738, 896, 905, 995, 1088
Alw26I GTCTC 3 cut(s) 160, 308, 934
AlwI GGATC 4 cut(s) 20, 258, 382, 580
Ama87I CYCGRG 1 cut(s) 572
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 1013
ApeKI GCWGC 2 cut(s) 749, 1088
ApoI RAATTY 3 cut(s) 557, 619, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 445, 477
Asp700I GAANNNNTTC 2 cut(s) 470, 1136
AsuHPI GGTGA 3 cut(s) 419, 441, 524
AvaI CYCGRG 1 cut(s) 572
AxyI CCTNAGG 1 cut(s) 136
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BbsI GAAGAC 2 cut(s) 190, 301
BbvI GCAGC 2 cut(s) 736, 1075
BccI CCATC 5 cut(s) 54, 407, 524, 824, 968
BceAI ACGGC 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 160, 308, 934
BfaI CTAG 2 cut(s) 507, 759
BfrI CTTAAG 1 cut(s) 710
BfuAI ACCTGC 1 cut(s) 934
BisI GCNGC 4 cut(s) 276, 657, 750, 1089
BlsI GCNGC 4 cut(s) 277, 658, 751, 1090
BmeRI GACNNNNNGTC 1 cut(s) 1119
BmeT110I CYCGRG 1 cut(s) 572
BmiI GGNNCC 2 cut(s) 54, 648
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 2 cut(s) 190, 301
BplI GAGNNNNNCTC 2 cut(s) 631, 663
Bpu10I CCTNAGC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 589
BsaWI WCCGGW 2 cut(s) 49, 682
Bse21I CCTNAGG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 589
BseGI GGATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 363, 470
BseRI GAGGAG 4 cut(s) 23, 89, 92, 236
BseXI GCAGC 2 cut(s) 736, 1075
Bsh1236I CGCG 1 cut(s) 656
BshFI GGCC 1 cut(s) 1015
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 2 cut(s) 50, 683
BslFI GGGAC 2 cut(s) 345, 991
BsmAI GTCTC 3 cut(s) 160, 308, 934
BsmBI CGTCTC 2 cut(s) 160, 308
BsmFI GGGAC 2 cut(s) 345, 991
BsnI GGCC 1 cut(s) 1015
BsoBI CYCGRG 1 cut(s) 572
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 5 cut(s) 25, 263, 374, 585, 859
BspACI CCGC 8 cut(s) 267, 273, 276, 291, 611, 656, 659, 756
BspANI GGCC 1 cut(s) 1015
BspCNI CTCAG 2 cut(s) 362, 469
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 656
BspLI GGNNCC 2 cut(s) 54, 648
BspMI ACCTGC 1 cut(s) 934
BspPI GGATC 4 cut(s) 20, 258, 382, 580
BspTI CTTAAG 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 5 cut(s) 25, 263, 374, 585, 859
BssNAI GTATAC 1 cut(s) 680
BssNI GRCGYC 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 680
Bst4CI ACNGT 2 cut(s) 336, 982
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 710
BstBAI YACGTR 1 cut(s) 719
BstDEI CTNAG 5 cut(s) 136, 349, 456, 909, 1092
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 656
BstKTI GATC 5 cut(s) 28, 266, 377, 588, 862
BstMAI GTCTC 3 cut(s) 160, 308, 934
BstMBI GATC 5 cut(s) 25, 263, 374, 585, 859
BstMWI GCNNNNNNNGC 6 cut(s) 275, 644, 653, 755, 799, 902
BstUI CGCG 1 cut(s) 656
BstV1I GCAGC 2 cut(s) 736, 1075
BstV2I GAAGAC 2 cut(s) 190, 301
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BstZ17I GTATAC 1 cut(s) 680
Bsu36I CCTNAGG 1 cut(s) 136
BsuRI GGCC 1 cut(s) 1015
BtsCI GGATG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 934
CseI GACGC 1 cut(s) 808
Csp6I GTAC 1 cut(s) 923
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 5 cut(s) 136, 349, 456, 909, 1092
DpnI GATC 5 cut(s) 27, 265, 376, 587, 861
DpnII GATC 5 cut(s) 25, 263, 374, 585, 859
DriI GACNNNNNGTC 1 cut(s) 1119
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 4 cut(s) 256, 262, 280, 600
Eco57I CTGAAG 2 cut(s) 354, 885
Eco81I CCTNAGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 572
EcoRI GAATTC 2 cut(s) 619, 1132
Esp3I CGTCTC 2 cut(s) 160, 308
FaqI GGGAC 2 cut(s) 345, 991
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 4 cut(s) 276, 657, 750, 1089
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 276, 657, 750, 1089
FspBI CTAG 2 cut(s) 507, 759
GluI GCNGC 4 cut(s) 276, 657, 750, 1089
HaeIII GGCC 1 cut(s) 1015
HapII CCGG 2 cut(s) 50, 683
HgaI GACGC 1 cut(s) 808
Hin1I GRCGYC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 324
HpaII CCGG 2 cut(s) 50, 683
HphI GGTGA 3 cut(s) 419, 441, 524
Hpy166II GTNNAC 1 cut(s) 680
Hpy188I TCNGA 4 cut(s) 25, 226, 253, 625
Hpy188III TCNNGA 7 cut(s) 39, 50, 372, 572, 574, 857, 1124
Hpy8I GTNNAC 1 cut(s) 680
Hpy99I CGWCG 6 cut(s) 128, 155, 230, 233, 619, 656
HpyAV CCTTC 6 cut(s) 378, 393, 966, 982, 1024, 1104
HpyCH4III ACNGT 2 cut(s) 336, 982
HpyCH4IV ACGT 2 cut(s) 126, 718
HpyCH4V TGCA 1 cut(s) 775
HpyF10VI GCNNNNNNNGC 6 cut(s) 275, 644, 653, 755, 799, 902
HpyF3I CTNAG 5 cut(s) 136, 349, 456, 909, 1092
HpySE526I ACGT 2 cut(s) 126, 718
Hsp92I GRCGYC 1 cut(s) 126
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 25, 263, 374, 585, 859
LmnI GCTCC 4 cut(s) 152, 652, 958, 992
LpnPI CCDG 8 cut(s) 63, 99, 336, 357, 443, 696, 939, 984
Lsp1109I GCAGC 2 cut(s) 736, 1075
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 507, 759
MaeII ACGT 2 cut(s) 126, 718
MaeIII GTNAC 2 cut(s) 318, 436
MalI GATC 5 cut(s) 27, 265, 376, 587, 861
MboI GATC 5 cut(s) 25, 263, 374, 585, 859
MflI RGATCY 1 cut(s) 25
MluCI AATT 8 cut(s) 9, 515, 557, 577, 619, 872, 965, 1132
MlyI GAGTC 4 cut(s) 83, 448, 910, 1031
MmeI TCCRAC 1 cut(s) 249
MroI TCCGGA 1 cut(s) 49
MroXI GAANNNNTTC 2 cut(s) 470, 1136
MseI TTAA 6 cut(s) 176, 342, 483, 492, 711, 1104
MspCI CTTAAG 1 cut(s) 710
MspI CCGG 2 cut(s) 50, 683
MvnI CGCG 1 cut(s) 656
MwoI GCNNNNNNNGC 6 cut(s) 275, 644, 653, 755, 799, 902
NdeII GATC 5 cut(s) 25, 263, 374, 585, 859
NlaIV GGNNCC 2 cut(s) 54, 648
NmeAIII GCCGAG 1 cut(s) 1041
PaeR7I CTCGAG 1 cut(s) 572
PcsI WCGNNNNNNNCGW 3 cut(s) 72, 207, 1004
PdmI GAANNNNTTC 2 cut(s) 470, 1136
PfeI GAWTC 6 cut(s) 42, 165, 233, 607, 686, 853
PkrI GCNGC 4 cut(s) 277, 658, 751, 1090
PleI GAGTC 4 cut(s) 83, 448, 910, 1030
PpsI GAGTC 4 cut(s) 83, 448, 910, 1030
Ppu21I YACGTR 1 cut(s) 719
PspN4I GGNNCC 2 cut(s) 54, 648
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
SaqAI TTAA 6 cut(s) 176, 342, 483, 492, 711, 1104
SatI GCNGC 4 cut(s) 276, 657, 750, 1089
Sau3AI GATC 5 cut(s) 25, 263, 374, 585, 859
SchI GAGTC 4 cut(s) 83, 448, 910, 1031
SfaNI GCATC 1 cut(s) 451
Sfr274I CTCGAG 1 cut(s) 572
SlaI CTCGAG 1 cut(s) 572
SmlI CTYRAG 3 cut(s) 183, 572, 710
SmoI CTYRAG 3 cut(s) 183, 572, 710
Sse9I AATT 8 cut(s) 9, 515, 557, 577, 619, 872, 965, 1132
SsiI CCGC 8 cut(s) 267, 273, 276, 291, 611, 656, 659, 756
SspMI CTAG 2 cut(s) 507, 759
TaaI ACNGT 2 cut(s) 336, 982
TaiI ACGT 2 cut(s) 129, 721
TasI AATT 8 cut(s) 9, 515, 557, 577, 619, 872, 965, 1132
TauI GCSGC 2 cut(s) 278, 659
TfiI GAWTC 6 cut(s) 42, 165, 233, 607, 686, 853
Tru1I TTAA 6 cut(s) 176, 342, 483, 492, 711, 1104
Tru9I TTAA 6 cut(s) 176, 342, 483, 492, 711, 1104
TseI GCWGC 2 cut(s) 749, 1088
TspDTI ATGAA 2 cut(s) 9, 866
TspGWI ACGGA 5 cut(s) 5, 139, 290, 647, 717
Vha464I CTTAAG 1 cut(s) 710
XapI RAATTY 3 cut(s) 557, 619, 1132
XhoI CTCGAG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 679
XmnI GAANNNNTTC 2 cut(s) 470, 1136
XspI CTAG 2 cut(s) 507, 759
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.