Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G30820 AT2G34890 AT4G20320 AT4G20320 AT4G20320 AT4G20320 AT4G20320 AT4G20320 |
| fragaria_vesca | FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 |
| malus_domestica | MD00G1085100.v1.1 MD10G1221000.v1.1 |
| prunus_persica | Prupe.4G123500_v2.0.a1 Prupe.4G123500_v2.0.a1 Prupe.4G123500_v2.0.a1 Prupe.4G123500_v2.0.a1 |
| pyrus_communis | pycom05g21790 pycom10g18670 |
| rosa_chinensis | RchiOBHm_Chr5g0022491 |
| rosa_laevigata | RLG00000032665 |
| rosa_multiflora | Rmu_sc0001514.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00056550 |
| rosa_rugosa | Rorug05G0074200 |
| rosa_samantha | Rh5AG161000 Rh5CG174300 Rh5DG160600 |
| rosa_wichuraiana | Rw5G014350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 750 |
| AccII | CGCG | 1 cut(s) | 470 |
| AccIII | TCCGGA | 1 cut(s) | 1453 |
| AciI | CCGC | 3 cut(s) | 386, 468, 710 |
| AclWI | GGATC | 7 cut(s) | 113, 210, 380, 407, 420, 783, 1357 |
| AcsI | RAATTY | 4 cut(s) | 276, 520, 1095, 1265 |
| AcvI | CACGTG | 1 cut(s) | 1163 |
| AcyI | GRCGYC | 1 cut(s) | 629 |
| AfaI | GTAC | 2 cut(s) | 8, 1104 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 401, 750, 842, 1184, 1477, 1596 |
| AflIII | ACRYGT | 1 cut(s) | 883 |
| AgsI | TTSAA | 9 cut(s) | 161, 365, 437, 464, 668, 1369, 1466, 1535, 1585 |
| AjnI | CCWGG | 2 cut(s) | 514, 1105 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 136, 168, 315, 347 |
| Alw21I | GWGCWC | 3 cut(s) | 656, 810, 1567 |
| Alw26I | GTCTC | 2 cut(s) | 156, 246 |
| AlwI | GGATC | 7 cut(s) | 113, 210, 380, 407, 420, 783, 1357 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1673 |
| Ama87I | CYCGRG | 3 cut(s) | 1307, 1577, 1595 |
| Aor13HI | TCCGGA | 1 cut(s) | 1453 |
| AoxI | GGCC | 4 cut(s) | 511, 922, 1479, 1786 |
| ApeKI | GCWGC | 4 cut(s) | 1064, 1148, 1496, 1631 |
| ApoI | RAATTY | 4 cut(s) | 276, 520, 1095, 1265 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 228 |
| AspLEI | GCGC | 3 cut(s) | 472, 487, 1344 |
| AspS9I | GGNCC | 3 cut(s) | 512, 532, 1700 |
| AsuC2I | CCSGG | 2 cut(s) | 1596, 1597 |
| AsuHPI | GGTGA | 7 cut(s) | 179, 206, 467, 581, 904, 1130, 1459 |
| AvaI | CYCGRG | 3 cut(s) | 1307, 1577, 1595 |
| AvaII | GGWCC | 2 cut(s) | 532, 1700 |
| BamHI | GGATCC | 1 cut(s) | 412 |
| BanII | GRGCYC | 1 cut(s) | 1626 |
| BauI | CACGAG | 1 cut(s) | 545 |
| BbrPI | CACGTG | 1 cut(s) | 1163 |
| BbsI | GAAGAC | 1 cut(s) | 86 |
| Bbv12I | GWGCWC | 3 cut(s) | 656, 810, 1567 |
| BbvI | GCAGC | 4 cut(s) | 1051, 1135, 1483, 1643 |
| BccI | CCATC | 5 cut(s) | 182, 395, 1085, 1370, 1554 |
| BceAI | ACGGC | 1 cut(s) | 1789 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 365, 399, 973, 1007 |
| BciT130I | CCWGG | 2 cut(s) | 516, 1107 |
| BcnI | CCSGG | 2 cut(s) | 1596, 1597 |
| BcoDI | GTCTC | 2 cut(s) | 156, 246 |
| BfaI | CTAG | 5 cut(s) | 233, 689, 819, 842, 1797 |
| BfoI | RGCGCY | 1 cut(s) | 488 |
| BisI | GCNGC | 4 cut(s) | 1065, 1149, 1497, 1632 |
| BlsI | GCNGC | 4 cut(s) | 1066, 1150, 1498, 1633 |
| Bme1390I | CCNGG | 4 cut(s) | 516, 1107, 1596, 1597 |
| Bme18I | GGWCC | 2 cut(s) | 532, 1700 |
| BmeT110I | CYCGRG | 3 cut(s) | 1307, 1577, 1595 |
| BmgT120I | GGNCC | 3 cut(s) | 512, 532, 1700 |
| BmiI | GGNNCC | 2 cut(s) | 414, 1008 |
| BmrFI | CCNGG | 4 cut(s) | 516, 1107, 1596, 1597 |
| BmrI | ACTGGG | 1 cut(s) | 279 |
| BmsI | GCATC | 7 cut(s) | 127, 346, 922, 1042, 1302, 1438, 1643 |
| BmuI | ACTGGG | 1 cut(s) | 279 |
| BpiI | GAAGAC | 1 cut(s) | 86 |
| BpmI | CTGGAG | 1 cut(s) | 1128 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1345 |
| BpuEI | CTTGAG | 2 cut(s) | 734, 1493 |
| BpuMI | CCSGG | 2 cut(s) | 1596, 1597 |
| Bsa29I | ATCGAT | 1 cut(s) | 117 |
| BsaAI | YACGTR | 2 cut(s) | 10, 1163 |
| BsaBI | GATNNNNATC | 3 cut(s) | 123, 207, 936 |
| BsaHI | GRCGYC | 1 cut(s) | 629 |
| BsaJI | CCNNGG | 5 cut(s) | 514, 515, 1183, 1308, 1595 |
| BsaWI | WCCGGW | 1 cut(s) | 1453 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 15, 45, 136, 166 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 401, 750, 842, 1184, 1477, 1596 |
| Bse118I | RCCGGY | 2 cut(s) | 889, 1481 |
| Bse1I | ACTGG | 2 cut(s) | 274, 1516 |
| Bse3DI | GCAATG | 2 cut(s) | 1626, 1789 |
| Bse8I | GATNNNNATC | 3 cut(s) | 123, 207, 936 |
| BseAI | TCCGGA | 1 cut(s) | 1453 |
| BseBI | CCWGG | 2 cut(s) | 516, 1107 |
| BseCI | ATCGAT | 1 cut(s) | 117 |
| BseDI | CCNNGG | 5 cut(s) | 514, 515, 1183, 1308, 1595 |
| BseGI | GGATG | 2 cut(s) | 1285, 1546 |
| BseJI | GATNNNNATC | 3 cut(s) | 123, 207, 936 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 401, 750, 842, 1184, 1477, 1596 |
| BseMI | GCAATG | 2 cut(s) | 1626, 1789 |
| BseMII | CTCAG | 2 cut(s) | 707, 1026 |
| BseNI | ACTGG | 2 cut(s) | 274, 1516 |
| BseRI | GAGGAG | 2 cut(s) | 1140, 1599 |
| BseXI | GCAGC | 4 cut(s) | 1051, 1135, 1483, 1643 |
| Bsh1236I | CGCG | 1 cut(s) | 470 |
| BshFI | GGCC | 4 cut(s) | 513, 924, 1481, 1788 |
| BshVI | ATCGAT | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 3 cut(s) | 656, 810, 1567 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1307, 1577, 1595 |
| BsiSI | CCGG | 5 cut(s) | 632, 890, 1454, 1482, 1596 |
| BslFI | GGGAC | 1 cut(s) | 692 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 401, 750, 842, 1184, 1477, 1596 |
| BsmAI | GTCTC | 2 cut(s) | 156, 246 |
| BsmFI | GGGAC | 1 cut(s) | 692 |
| BsmI | GAATGC | 1 cut(s) | 1206 |
| BsnI | GGCC | 4 cut(s) | 513, 924, 1481, 1788 |
| BsoBI | CYCGRG | 3 cut(s) | 1307, 1577, 1595 |
| Bsp1286I | GDGCHC | 4 cut(s) | 656, 810, 1567, 1626 |
| Bsp13I | TCCGGA | 1 cut(s) | 1453 |
| BspACI | CCGC | 3 cut(s) | 386, 468, 710 |
| BspANI | GGCC | 4 cut(s) | 513, 924, 1481, 1788 |
| BspCNI | CTCAG | 2 cut(s) | 706, 1027 |
| BspDI | ATCGAT | 1 cut(s) | 117 |
| BspEI | TCCGGA | 1 cut(s) | 1453 |
| BspFNI | CGCG | 1 cut(s) | 470 |
| BspLI | GGNNCC | 2 cut(s) | 414, 1008 |
| BspPI | GGATC | 7 cut(s) | 113, 210, 380, 407, 420, 783, 1357 |
| BsrDI | GCAATG | 2 cut(s) | 1626, 1789 |
| BsrFI | RCCGGY | 2 cut(s) | 889, 1481 |
| BsrI | ACTGG | 2 cut(s) | 274, 1516 |
| BssAI | RCCGGY | 2 cut(s) | 889, 1481 |
| BssECI | CCNNGG | 5 cut(s) | 514, 515, 1183, 1308, 1595 |
| BssNI | GRCGYC | 1 cut(s) | 629 |
| BssSI | CACGAG | 1 cut(s) | 545 |
| Bst2BI | CACGAG | 1 cut(s) | 545 |
| Bst2UI | CCWGG | 2 cut(s) | 516, 1107 |
| Bst4CI | ACNGT | 5 cut(s) | 167, 331, 506, 1657, 1700 |
| Bst6I | CTCTTC | 1 cut(s) | 402 |
| BstACI | GRCGYC | 1 cut(s) | 629 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1157 |
| BstBAI | YACGTR | 2 cut(s) | 10, 1163 |
| BstC8I | GCNNGC | 1 cut(s) | 1244 |
| BstDEI | CTNAG | 6 cut(s) | 582, 640, 693, 1035, 1238, 1345 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 840, 1475 |
| BstF5I | GGATG | 2 cut(s) | 1285, 1546 |
| BstFNI | CGCG | 1 cut(s) | 470 |
| BstH2I | RGCGCY | 1 cut(s) | 488 |
| BstHHI | GCGC | 3 cut(s) | 472, 487, 1344 |
| BstMAI | GTCTC | 2 cut(s) | 156, 246 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 592, 791, 974, 1061, 1157, 1341 |
| BstNI | CCWGG | 2 cut(s) | 516, 1107 |
| BstNSI | RCATGY | 3 cut(s) | 290, 887, 968 |
| BstSCI | CCNGG | 4 cut(s) | 514, 1105, 1594, 1595 |
| BstUI | CGCG | 1 cut(s) | 470 |
| BstV1I | GCAGC | 4 cut(s) | 1051, 1135, 1483, 1643 |
| BstV2I | GAAGAC | 1 cut(s) | 86 |
| BstX2I | RGATCY | 2 cut(s) | 202, 412 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1750 |
| BstYI | RGATCY | 2 cut(s) | 202, 412 |
| Bsu15I | ATCGAT | 1 cut(s) | 117 |
| BsuRI | GGCC | 4 cut(s) | 513, 924, 1481, 1788 |
| BsuTUI | ATCGAT | 1 cut(s) | 117 |
| BtsCI | GGATG | 2 cut(s) | 1285, 1546 |
| BtsIMutI | CAGTG | 2 cut(s) | 132, 351 |
| Cac8I | GCNNGC | 1 cut(s) | 1244 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1673 |
| CfoI | GCGC | 3 cut(s) | 472, 487, 1344 |
| Cfr10I | RCCGGY | 2 cut(s) | 889, 1481 |
| Cfr13I | GGNCC | 3 cut(s) | 512, 532, 1700 |
| Cfr9I | CCCGGG | 1 cut(s) | 1595 |
| ClaI | ATCGAT | 1 cut(s) | 117 |
| CseI | GACGC | 2 cut(s) | 637, 1259 |
| Csp6I | GTAC | 2 cut(s) | 7, 1103 |
| CviAII | CATG | 9 cut(s) | 287, 347, 536, 704, 884, 965, 1303, 1459, 1522 |
| CviQI | GTAC | 2 cut(s) | 7, 1103 |
| DdeI | CTNAG | 6 cut(s) | 582, 640, 693, 1035, 1238, 1345 |
| Eam1104I | CTCTTC | 1 cut(s) | 402 |
| EarI | CTCTTC | 1 cut(s) | 402 |
| Eco147I | AGGCCT | 1 cut(s) | 924 |
| Eco24I | GRGCYC | 1 cut(s) | 1626 |
| Eco32I | GATATC | 2 cut(s) | 238, 637 |
| Eco47I | GGWCC | 2 cut(s) | 532, 1700 |
| Eco72I | CACGTG | 1 cut(s) | 1163 |
| Eco88I | CYCGRG | 3 cut(s) | 1307, 1577, 1595 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 840, 1475 |
| EcoRI | GAATTC | 1 cut(s) | 1095 |
| EcoRII | CCWGG | 2 cut(s) | 514, 1105 |
| EcoRV | GATATC | 2 cut(s) | 238, 637 |
| EcoT38I | GRGCYC | 1 cut(s) | 1626 |
| FaeI | CATG | 9 cut(s) | 290, 350, 539, 707, 887, 968, 1306, 1462, 1525 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 944, 976 |
| FaqI | GGGAC | 1 cut(s) | 692 |
| FatI | CATG | 9 cut(s) | 286, 346, 535, 703, 883, 964, 1302, 1458, 1521 |
| FauI | CCCGC | 1 cut(s) | 717 |
| FauNDI | CATATG | 1 cut(s) | 1326 |
| Fnu4HI | GCNGC | 4 cut(s) | 1065, 1149, 1497, 1632 |
| FokI | GGATG | 2 cut(s) | 1272, 1533 |
| FriOI | GRGCYC | 1 cut(s) | 1626 |
| Fsp4HI | GCNGC | 4 cut(s) | 1065, 1149, 1497, 1632 |
| FspBI | CTAG | 5 cut(s) | 233, 689, 819, 842, 1797 |
| GlaI | GCGC | 3 cut(s) | 471, 486, 1343 |
| GluI | GCNGC | 4 cut(s) | 1065, 1149, 1497, 1632 |
| GsuI | CTGGAG | 1 cut(s) | 1128 |
| HaeII | RGCGCY | 1 cut(s) | 488 |
| HaeIII | GGCC | 4 cut(s) | 513, 924, 1481, 1788 |
| HapII | CCGG | 5 cut(s) | 632, 890, 1454, 1482, 1596 |
| HgaI | GACGC | 2 cut(s) | 637, 1259 |
| HhaI | GCGC | 3 cut(s) | 472, 487, 1344 |
| Hin1I | GRCGYC | 1 cut(s) | 629 |
| Hin1II | CATG | 9 cut(s) | 290, 350, 539, 707, 887, 968, 1306, 1462, 1525 |
| Hin6I | GCGC | 3 cut(s) | 470, 485, 1342 |
| HinP1I | GCGC | 3 cut(s) | 470, 485, 1342 |
| HindIII | AAGCTT | 4 cut(s) | 84, 1240, 1411, 1602 |
| HinfI | GANTC | 6 cut(s) | 464, 897, 1045, 1141, 1450, 1663 |
| HpaII | CCGG | 5 cut(s) | 632, 890, 1454, 1482, 1596 |
| HphI | GGTGA | 7 cut(s) | 179, 206, 467, 581, 904, 1130, 1459 |
| Hpy166II | GTNNAC | 1 cut(s) | 572 |
| Hpy188I | TCNGA | 3 cut(s) | 129, 780, 931 |
| Hpy8I | GTNNAC | 1 cut(s) | 572 |
| HpyAV | CCTTC | 3 cut(s) | 846, 1127, 1471 |
| HpyCH4III | ACNGT | 5 cut(s) | 167, 331, 506, 1657, 1700 |
| HpyCH4IV | ACGT | 2 cut(s) | 9, 1162 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 592, 791, 974, 1061, 1157, 1341 |
| HpyF3I | CTNAG | 6 cut(s) | 582, 640, 693, 1035, 1238, 1345 |
| HpySE526I | ACGT | 2 cut(s) | 9, 1162 |
| Hsp92I | GRCGYC | 1 cut(s) | 629 |
| Hsp92II | CATG | 9 cut(s) | 290, 350, 539, 707, 887, 968, 1306, 1462, 1525 |
| HspAI | GCGC | 3 cut(s) | 470, 485, 1342 |
| Kpn2I | TCCGGA | 1 cut(s) | 1453 |
| LmnI | GCTCC | 1 cut(s) | 651 |
| Lsp1109I | GCAGC | 4 cut(s) | 1051, 1135, 1483, 1643 |
| LweI | GCATC | 7 cut(s) | 127, 346, 922, 1042, 1302, 1438, 1643 |
| MaeI | CTAG | 5 cut(s) | 233, 689, 819, 842, 1797 |
| MaeII | ACGT | 2 cut(s) | 9, 1162 |
| MaeIII | GTNAC | 7 cut(s) | 16, 52, 100, 349, 872, 1433, 1694 |
| MboII | GAAGA | 6 cut(s) | 86, 419, 680, 715, 1150, 1357 |
| MflI | RGATCY | 2 cut(s) | 202, 412 |
| MhlI | GDGCHC | 4 cut(s) | 656, 810, 1567, 1626 |
| MmeI | TCCRAC | 1 cut(s) | 1727 |
| MroI | TCCGGA | 1 cut(s) | 1453 |
| MroXI | GAANNNNTTC | 1 cut(s) | 228 |
| MseI | TTAA | 6 cut(s) | 81, 245, 558, 828, 950, 1269 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1301 |
| MspI | CCGG | 5 cut(s) | 632, 890, 1454, 1482, 1596 |
| MspR9I | CCNGG | 4 cut(s) | 516, 1107, 1596, 1597 |
| Mva1269I | GAATGC | 1 cut(s) | 1206 |
| MvaI | CCWGG | 2 cut(s) | 516, 1107 |
| MvnI | CGCG | 1 cut(s) | 470 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 592, 791, 974, 1061, 1157, 1341 |
| NciI | CCSGG | 2 cut(s) | 1596, 1597 |
| NdeI | CATATG | 1 cut(s) | 1326 |
| NlaIII | CATG | 9 cut(s) | 290, 350, 539, 707, 887, 968, 1306, 1462, 1525 |
| NlaIV | GGNNCC | 2 cut(s) | 414, 1008 |
| NmuCI | GTSAC | 3 cut(s) | 349, 872, 1433 |
| NspI | RCATGY | 3 cut(s) | 290, 887, 968 |
| PasI | CCCWGGG | 1 cut(s) | 515 |
| PceI | AGGCCT | 1 cut(s) | 924 |
| PciI | ACATGT | 1 cut(s) | 883 |
| PctI | GAATGC | 1 cut(s) | 1206 |
| PdmI | GAANNNNTTC | 1 cut(s) | 228 |
| PfeI | GAWTC | 6 cut(s) | 464, 897, 1045, 1141, 1450, 1663 |
| PflFI | GACNNNGTC | 1 cut(s) | 1655 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 750 |
| PkrI | GCNGC | 4 cut(s) | 1066, 1150, 1498, 1633 |
| PmaCI | CACGTG | 1 cut(s) | 1163 |
| PmlI | CACGTG | 1 cut(s) | 1163 |
| Ppu21I | YACGTR | 2 cut(s) | 10, 1163 |
| PscI | ACATGT | 1 cut(s) | 883 |
| Psp6I | CCWGG | 2 cut(s) | 514, 1105 |
| PspCI | CACGTG | 1 cut(s) | 1163 |
| PspGI | CCWGG | 2 cut(s) | 514, 1105 |
| PspN4I | GGNNCC | 2 cut(s) | 414, 1008 |
| PspPI | GGNCC | 3 cut(s) | 512, 532, 1700 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1673 |
| PsuI | RGATCY | 2 cut(s) | 202, 412 |
| PsyI | GACNNNGTC | 1 cut(s) | 1655 |
| RsaI | GTAC | 2 cut(s) | 8, 1104 |
| RsaNI | GTAC | 2 cut(s) | 7, 1103 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1301 |
| SaqAI | TTAA | 6 cut(s) | 81, 245, 558, 828, 950, 1269 |
| SatI | GCNGC | 4 cut(s) | 1065, 1149, 1497, 1632 |
| Sau96I | GGNCC | 3 cut(s) | 512, 532, 1700 |
| ScrFI | CCNGG | 4 cut(s) | 516, 1107, 1596, 1597 |
| SduI | GDGCHC | 4 cut(s) | 656, 810, 1567, 1626 |
| SfaNI | GCATC | 7 cut(s) | 127, 346, 922, 1042, 1302, 1438, 1643 |
| SinI | GGWCC | 2 cut(s) | 532, 1700 |
| SmaI | CCCGGG | 1 cut(s) | 1597 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1301 |
| SmlI | CTYRAG | 2 cut(s) | 713, 1472 |
| SmoI | CTYRAG | 2 cut(s) | 713, 1472 |
| SseBI | AGGCCT | 1 cut(s) | 924 |
| SsiI | CCGC | 3 cut(s) | 386, 468, 710 |
| SspMI | CTAG | 5 cut(s) | 233, 689, 819, 842, 1797 |
| StuI | AGGCCT | 1 cut(s) | 924 |
| StyD4I | CCNGG | 4 cut(s) | 514, 1105, 1594, 1595 |
| TaaI | ACNGT | 5 cut(s) | 167, 331, 506, 1657, 1700 |
| TaiI | ACGT | 2 cut(s) | 12, 1165 |
| TaqI | TCGA | 7 cut(s) | 97, 117, 375, 480, 1023, 1218, 1688 |
| TfiI | GAWTC | 6 cut(s) | 464, 897, 1045, 1141, 1450, 1663 |
| Tru1I | TTAA | 6 cut(s) | 81, 245, 558, 828, 950, 1269 |
| Tru9I | TTAA | 6 cut(s) | 81, 245, 558, 828, 950, 1269 |
| TscAI | CASTG | 2 cut(s) | 139, 358 |
| TseFI | GTSAC | 3 cut(s) | 349, 872, 1433 |
| TseI | GCWGC | 4 cut(s) | 1064, 1148, 1496, 1631 |
| Tsp45I | GTSAC | 3 cut(s) | 349, 872, 1433 |
| TspDTI | ATGAA | 4 cut(s) | 17, 1291, 1521, 1705 |
| TspMI | CCCGGG | 1 cut(s) | 1595 |
| TspRI | CASTG | 2 cut(s) | 139, 358 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1655 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 750 |
| VpaK11BI | GGWCC | 2 cut(s) | 532, 1700 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 840, 1475 |
| XapI | RAATTY | 4 cut(s) | 276, 520, 1095, 1265 |
| XbaI | TCTAGA | 1 cut(s) | 232 |
| XceI | RCATGY | 3 cut(s) | 290, 887, 968 |
| XmaI | CCCGGG | 1 cut(s) | 1595 |
| XmnI | GAANNNNTTC | 1 cut(s) | 228 |
| XspI | CTAG | 5 cut(s) | 233, 689, 819, 842, 1797 |