Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003725

Physical Location & Seq

Genomic Coordinates Reverse (-)

6407588 .. 6410346

Gene Structure 2759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTCGTCAAACTTGAGAGGAAAAAGAGAGTCTCTTCAATGACTTCTCATTCCCAAGAGAGTCTCTATCTGCAAATGTCACAACAAAGAGAATCAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAAATGAAGCTCAAGATCAACCAGAAGTTGCTCAAGCACAACAAGACTATGGAGCAAGCAGAGTGGAATCTAAACAACCAAGCATGAACAATGAAAGATATGGAAGGATCGTGAAGGTTCAAGGAGGCCACGTTATTAGATCAATTGCGAGAAAAGACAGGCACAGCAAGATCTACACGTCCAAGGGCCCAAGAGACAGAAGGTTCCGGCTTTCAGCTCAAACTGCCATAGAGTTCTATGATGTTCAAGACCGTCTTGGCTTTGATAGACCAAGCAAGGCCATTGACTGGCTCATTCACAAGGCCAAGGCCTCCATTGAAGCTCTCGAAGATTCTTCTACTACACACCAGCCTCAGCATCACCAAGGAGGCAATGCCGAGCCAGAAACTGTCAAAACTCATCAGCCTTTGGACGAGGGCACTATGAAAAATGAGAGCAAAGAACCTGTTCTTGACTATGCTGAAGAAGCCCTCAATTGTGCTCCCAATTTATCAGAGGCCAATTTCATGGAGATGGGTTGGTTTCAAAGTCTGATGGCTTGGAATTACAATGCAGGTGATGGTGGAGAAGGTTGTTCTTTCAATTCATCATCTGTTACTCTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003883 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006241 GO:0006629 GO:0006644 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009142 GO:0009147 GO:0009148 GO:0009163 GO:0009165 GO:0009199 GO:0009201 GO:0009208 GO:0009209 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019856 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0046036 GO:0046112 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00240 ko01100 map00240 map01100

Pfam Domains

Protein Families

CTP_synth_N GATase

Protein Analysis

245

Amino Acids

27.93

Weight (kDa)

5.15

Isoelectric Point (pI)

68.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	93 - 173	3.9e-31	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30820 AT2G34890 AT4G20320 AT4G20320 AT4G20320 AT4G20320 AT4G20320 AT4G20320
fragaria_vesca	FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530 FvH4_3g13530
malus_domestica	MD00G1085100.v1.1 MD10G1221000.v1.1
prunus_persica	Prupe.4G123500_v2.0.a1 Prupe.4G123500_v2.0.a1 Prupe.4G123500_v2.0.a1 Prupe.4G123500_v2.0.a1
pyrus_communis	pycom05g21790 pycom10g18670
rosa_chinensis	RchiOBHm_Chr5g0022491
rosa_laevigata	RLG00000032665
rosa_multiflora	Rmu_sc0001514.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056550
rosa_rugosa	Rorug05G0074200
rosa_samantha	Rh5AG161000 Rh5CG174300 Rh5DG160600
rosa_wichuraiana	Rw5G014350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	417
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	612
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	39, 251, 377, 449, 656, 712
AjiI	CACGTC	1 cut(s)	309
AluBI	AGCT	3 cut(s)	140, 347, 452
AluI	AGCT	3 cut(s)	140, 347, 452
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	3 cut(s)	37, 68, 318
AlwI	GGATC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	6 cut(s)	256, 316, 408, 432, 438, 627
ApaI	GGGCCC	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	316, 317
AsuHPI	GGTGA	2 cut(s)	482, 698
BaeGI	GKGCMC	2 cut(s)	320, 551
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	613
BbvCI	CCTCAGC	1 cut(s)	483
BccI	CCATC	3 cut(s)	637, 658, 683
BcoDI	GTCTC	3 cut(s)	37, 68, 318
BfmI	CTRYAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	674
BglII	AGATCT	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	316, 317
BmiI	GGNNCC	2 cut(s)	318, 335
BmsI	GCATC	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	3 cut(s)	35, 126, 147
BsaJI	CCNNGG	3 cut(s)	312, 435, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	312, 435, 493
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	8 cut(s)	116, 119, 122, 125, 128, 131, 134, 137
BseSI	GKGCMC	2 cut(s)	320, 551
BshFI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	3 cut(s)	37, 68, 318
BsnI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
Bsp120I	GGGCCC	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	320, 551, 613
Bsp143I	GATC	4 cut(s)	145, 237, 269, 300
BspANI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	318, 335
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	3 cut(s)	312, 435, 493
BssMI	GATC	4 cut(s)	145, 237, 269, 300
BssT1I	CCWWGG	3 cut(s)	312, 435, 493
Bst4CI	ACNGT	2 cut(s)	383, 520
Bst6I	CTCTTC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	483
BstKTI	GATC	4 cut(s)	148, 240, 272, 303
BstMAI	GTCTC	3 cut(s)	37, 68, 318
BstMBI	GATC	4 cut(s)	145, 237, 269, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 596
BstSFI	CTRYAG	1 cut(s)	734
BstSLI	GKGCMC	2 cut(s)	320, 551
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
BtrI	CACGTC	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	316, 317
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	2 cut(s)	214, 637
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	4 cut(s)	147, 239, 271, 302
DpnII	GATC	4 cut(s)	145, 237, 269, 300
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	3 cut(s)	312, 435, 493
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	316
EcoT14I	CCWWGG	3 cut(s)	312, 435, 493
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	3 cut(s)	312, 435, 493
FaeI	CATG	2 cut(s)	217, 640
FaiI	YATR	9 cut(s)	180, 215, 231, 359, 369, 554, 588, 638, 736
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	2 cut(s)	213, 636
FriOI	GRGCYC	1 cut(s)	320
HaeIII	GGCC	6 cut(s)	258, 318, 410, 434, 440, 629
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	2 cut(s)	217, 640
HinfI	GANTC	5 cut(s)	30, 61, 92, 197, 461
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	2 cut(s)	482, 698
Hpy188I	TCNGA	2 cut(s)	625, 663
Hpy188III	TCNNGA	5 cut(s)	143, 241, 377, 455, 581
HpyAV	CCTTC	4 cut(s)	228, 238, 324, 692
HpyCH4III	ACNGT	2 cut(s)	383, 520
HpyCH4IV	ACGT	2 cut(s)	261, 308
HpyCH4V	TGCA	2 cut(s)	73, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 596
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	2 cut(s)	261, 308
Hsp92II	CATG	2 cut(s)	217, 640
Kzo9I	GATC	4 cut(s)	145, 237, 269, 300
LmnI	GCTCC	2 cut(s)	182, 616
LpnPI	CCDG	8 cut(s)	165, 274, 350, 403, 491, 525, 588, 669
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	2 cut(s)	261, 308
MaeIII	GTNAC	2 cut(s)	78, 724
MalI	GATC	4 cut(s)	147, 239, 271, 302
MboI	GATC	4 cut(s)	145, 237, 269, 300
MboII	GAAGA	5 cut(s)	27, 140, 456, 470, 605
MfeI	CAATTG	2 cut(s)	273, 604
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	3 cut(s)	320, 551, 613
MluCI	AATT	6 cut(s)	273, 604, 616, 631, 673, 712
MlyI	GAGTC	2 cut(s)	39, 70
MroXI	GAANNNNTTC	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	641
MspI	CCGG	1 cut(s)	337
MunI	CAATTG	2 cut(s)	273, 604
MwoI	GCNNNNNNNGC	2 cut(s)	353, 596
NdeII	GATC	4 cut(s)	145, 237, 269, 300
NlaIII	CATG	2 cut(s)	217, 640
NlaIV	GGNNCC	2 cut(s)	318, 335
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	92, 197, 461
PflMI	CCANNNNNTGG	1 cut(s)	417
PleI	GAGTC	2 cut(s)	38, 69
PpsI	GAGTC	2 cut(s)	38, 69
PspN4I	GGNNCC	2 cut(s)	318, 335
PspOMI	GGGCCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	316, 317
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	641
Sau3AI	GATC	4 cut(s)	145, 237, 269, 300
Sau96I	GGNCC	2 cut(s)	316, 317
SchI	GAGTC	2 cut(s)	39, 70
SduI	GDGCHC	3 cut(s)	320, 551, 613
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	3 cut(s)	14, 141, 162
SmoI	CTYRAG	3 cut(s)	14, 141, 162
Sse9I	AATT	6 cut(s)	273, 604, 616, 631, 673, 712
SseBI	AGGCCT	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	440
StyI	CCWWGG	3 cut(s)	312, 435, 493
TaaI	ACNGT	2 cut(s)	383, 520
TaiI	ACGT	2 cut(s)	264, 311
TaqI	TCGA	1 cut(s)	456
TasI	AATT	6 cut(s)	273, 604, 616, 631, 673, 712
TfiI	GAWTC	3 cut(s)	92, 197, 461
TseFI	GTSAC	1 cut(s)	78
Tsp45I	GTSAC	1 cut(s)	78
TspDTI	ATGAA	6 cut(s)	150, 230, 237, 569, 625, 705
Van91I	CCANNNNNTGG	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.