AT1G30950

A Receptor for Ubiquitination Targets

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
11035992 .. 11037508
1517 bp
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UTR
Exon/CDS
Intron
AT1G30950.1

Sequence Viewer

Length: 1329 bp
ATGGATTCAACTGTGTTCATCAATAACCCATCTTTAACCTTACCTTTCTCTTACACATTTACCAGTAGCAGCAACAGTAGCACAACAACGAGCACCACCACAGACTCAAGCTCCGGTCAATGGATGGACGGTCGGATTTGGAGCAAGCTACCACCTCCTCTTCTTGACCGCGTCATTGCTTTTCTTCCACCTCCGGCGTTTTTCCGGACACGTTGCGTCTGCAAGAGATTCTACAGTCTACTTTTCTCCAACACCTTCCTCGAGACATATCTACAACTACTTCCTCTCCGACACAACTGTTTCCTCTTCTTCAAACACAAAACCCTAAAGAGTTACATTTACAAGAGAGGAGGAACAAACGATGATGATTCCAATAAAGCTGAAGGCTTTTTGTTTGATCCTAATGAGATCCGATGGTACCGTCTCTCTTTTGCTTATATCCCTTCAGGGTTTTATCCTTCAGGATCATCAGGAGGGTTAGTGAGTTGGGTCTCCGAAGAAGCTGGTCTTAAAACCATTCTCTTGTGTAACCCTCTTGTCGGATCCGTGAGTCAGTTGCCACCAATATCAAGGCCAAGGCTTTTCCCTTCGATAGGTCTCTCGGTAACACCAACCTCTATTGATGTTACTGTCGCTGGAGATGATCTCATATCTCCTTACGCTGTGAAAAACCTCTCATCGGAGAGTTTCCATGTCGACGCCGGCGGATTCTTTTCCCTCTGGGCGATGACTTCTTCTTTGCCACGGCTTTGTAGCTTGGAATCTGGTAAGATGGTTTACGTGCAAGGCAAGTTTTACTGTATGAACTATAGCCCTTTTAGCGTTTTGTCCTATGAAGTTACTGGAAACCGGTGGATCAAGATTCAAGCTCCGATGAGGAGATTTCTCAGATCTCCAAGCTTGTTAGAGAGCAAAGGGAGGCTTATTCTTGTAGCAGCTGTTGAGAAAAGCAAGTTGAACGTTCCCAAAAGCCTACGACTTTGGAGTTTGCAACAAGATAACGCCACATGGGTCGAGATCGAACGGATGCCTCAGCCGCTCTACACACAGTTTGCAGCAGAAGAAGGTGGAAAAGGATTCGAGTGTGTCGGAAATCAAGAGTTTGTAATGATTGTGTTAAGAGGAACCTCGTTGCAGTTGCTGTTTGATATAGTGAGAAAAAGCTGGCTGTGGGTCCCACCGTGTCCTTACTCCGGCAGTGGTGGCGGTAGCTCAGGTGGCGGTTCAGACGGAGAGGTCTTGCAGGGTTTTGCTTATGACCCGGTGCTTACTACACCGGTGGTTAGTCTTCTTGATCAGTTAACACTTCCATTTCCTGGAGTCTGTTAG

Protein Analysis

442

Amino Acids

49.05

Weight (kDa)

8.62

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 86 8.8e-08 F-box domain
Beta-prop_KIB1-4 PF03478 152 - 343 4.7e-09 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014215)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30950
fragaria_vesca FvH4_3g03990 FvH4_3g12960
malus_domestica MD05G1246800.v1.1 MD10G1227400.v1.1
prunus_persica Prupe.4G117600_v2.0.a1 Prupe.4G117800_v2.0.a1
pyrus_communis pycom05g22270
rosa_chinensis RchiOBHm_Chr5g0021071
rosa_laevigata RLG00000032581
rosa_multiflora Rmu_ssc0000244.1_g000018
rosa_roxburghii Rroxscaffold_1G00057390
rosa_rugosa Rorug05G0064100
rosa_samantha Rh5BG153400 Rh5CG166300 Rh5DG153000
rosa_wichuraiana Rw5G013660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1235
Acc65I GGTACC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 1316
AccBSI CCGCTC 1 cut(s) 1039
AccI GTMKAC 2 cut(s) 238, 696
AccII CGCG 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 5 cut(s) 169, 705, 1037, 1206, 1221
AclI AACGTT 1 cut(s) 960
AclWI GGATC 6 cut(s) 392, 403, 472, 537, 550, 863
AcuI CTGAAG 3 cut(s) 402, 429, 444
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 6 cut(s) 120, 539, 593, 679, 1193, 1316
AflIII ACRYGT 1 cut(s) 209
AgeI ACCGGT 2 cut(s) 849, 1276
AgsI TTSAA 4 cut(s) 9, 313, 866, 958
AjnI CCWGG 1 cut(s) 1315
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 4 cut(s) 257, 428, 496, 602
AlwI GGATC 6 cut(s) 392, 403, 472, 537, 550, 863
AlwNI CAGNNNCTG 1 cut(s) 1141
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 1 cut(s) 572
ApeKI GCWGC 3 cut(s) 69, 935, 1055
ArsI GACNNNNNNTTYG 2 cut(s) 721, 753
AsiGI ACCGGT 2 cut(s) 849, 1276
Asp718I GGTACC 1 cut(s) 417
AspS9I GGNCC 1 cut(s) 1174
AsuC2I CCSGG 1 cut(s) 1262
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 1 cut(s) 1174
BamHI GGATCC 1 cut(s) 542
BanI GGYRCC 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 1280
Bbv12I GWGCWC 1 cut(s) 95
BbvCI CCTCAGC 1 cut(s) 1032
BbvI GCAGC 3 cut(s) 81, 947, 1067
BccI CCATC 4 cut(s) 37, 118, 408, 766
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 1 cut(s) 1317
BclI TGATCA 1 cut(s) 1294
BcnI CCSGG 1 cut(s) 1262
BcoDI GTCTC 4 cut(s) 257, 428, 496, 602
BfmI CTRYAG 2 cut(s) 232, 808
BglII AGATCT 1 cut(s) 890
BisI GCNGC 4 cut(s) 70, 936, 1037, 1056
BlsI GCNGC 4 cut(s) 71, 937, 1038, 1057
Bme1390I CCNGG 2 cut(s) 1262, 1317
Bme18I GGWCC 1 cut(s) 1174
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 1174
BmiI GGNNCC 5 cut(s) 419, 544, 1126, 1175, 1176
BmrFI CCNGG 2 cut(s) 1262, 1317
BmsI GCATC 1 cut(s) 1017
BpiI GAAGAC 1 cut(s) 1280
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 657
Bpu10I CCTNAGC 2 cut(s) 1032, 1213
BpuEI CTTGAG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 1262
BsaAI YACGTR 1 cut(s) 781
BsaHI GRCGYC 1 cut(s) 699
BsaI GGTCTC 2 cut(s) 496, 602
BsaJI CCNNGG 2 cut(s) 575, 743
BsaWI WCCGGW 4 cut(s) 113, 204, 849, 1276
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 270, 300, 465, 495
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 539, 593, 679, 1193, 1316
Bse118I RCCGGY 3 cut(s) 701, 849, 1276
Bse1I ACTGG 2 cut(s) 63, 847
Bse3DI GCAATG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 1 cut(s) 1317
BseDI CCNNGG 2 cut(s) 575, 743
BseGI GGATG 2 cut(s) 129, 1032
BseLI CCNNNNNNNGG 6 cut(s) 120, 539, 593, 679, 1193, 1316
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 901, 1046, 1227
BseNI ACTGG 2 cut(s) 63, 847
BseRI GAGGAG 3 cut(s) 147, 363, 892
BseXI GCAGC 3 cut(s) 81, 947, 1067
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 574
BshNI GGYRCC 1 cut(s) 417
BshTI ACCGGT 2 cut(s) 849, 1276
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 8 cut(s) 114, 194, 205, 702, 850, 1194, 1262, 1277
BslFI GGGAC 1 cut(s) 1160
BslI CCNNNNNNNGG 6 cut(s) 120, 539, 593, 679, 1193, 1316
BsmAI GTCTC 4 cut(s) 257, 428, 496, 602
BsmBI CGTCTC 1 cut(s) 428
BsmFI GGGAC 1 cut(s) 1160
BsnI GGCC 1 cut(s) 574
Bso31I GGTCTC 2 cut(s) 496, 602
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 95
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
BspACI CCGC 5 cut(s) 169, 705, 1037, 1206, 1221
BspANI GGCC 1 cut(s) 574
BspCNI CTCAG 3 cut(s) 900, 1045, 1226
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 5 cut(s) 419, 544, 1126, 1175, 1176
BspPI GGATC 6 cut(s) 392, 403, 472, 537, 550, 863
BspT107I GGYRCC 1 cut(s) 417
BspTNI GGTCTC 2 cut(s) 496, 602
BsrBI CCGCTC 1 cut(s) 1039
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 3 cut(s) 701, 849, 1276
BsrI ACTGG 2 cut(s) 63, 847
BssAI RCCGGY 3 cut(s) 701, 849, 1276
BssECI CCNNGG 2 cut(s) 575, 743
BssMI GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 1317
Bst6I CTCTTC 2 cut(s) 165, 311
BstACI GRCGYC 1 cut(s) 699
BstBAI YACGTR 1 cut(s) 781
BstC8I GCNNGC 3 cut(s) 146, 703, 1166
BstDEI CTNAG 3 cut(s) 887, 1032, 1213
BstDSI CCRYGG 1 cut(s) 743
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 129, 1032
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 9 cut(s) 400, 411, 467, 545, 646, 858, 893, 1020, 1297
BstMAI GTCTC 4 cut(s) 257, 428, 496, 602
BstMBI GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 78, 819, 1036, 1203, 1218
BstNI CCWGG 1 cut(s) 1317
BstSCI CCNGG 2 cut(s) 1260, 1315
BstSFI CTRYAG 2 cut(s) 232, 808
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 81, 947, 1067
BstV2I GAAGAC 1 cut(s) 1280
BstX2I RGATCY 3 cut(s) 408, 542, 890
BstYI RGATCY 3 cut(s) 408, 542, 890
BsuRI GGCC 1 cut(s) 574
BtgI CCRYGG 1 cut(s) 743
BtgZI GCGATG 1 cut(s) 740
BtsCI GGATG 2 cut(s) 129, 1032
BtsI GCAGTG 1 cut(s) 1204
BtsIMutI CAGTG 1 cut(s) 1204
Cac8I GCNNGC 3 cut(s) 146, 703, 1166
CaiI CAGNNNCTG 1 cut(s) 1141
Cfr10I RCCGGY 3 cut(s) 701, 849, 1276
Cfr13I GGNCC 1 cut(s) 1174
CseI GACGC 3 cut(s) 160, 205, 707
Csp6I GTAC 1 cut(s) 418
CspAI ACCGGT 2 cut(s) 849, 1276
CviAII CATG 2 cut(s) 692, 1008
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 887, 1032, 1213
DpnI GATC 9 cut(s) 399, 410, 466, 544, 645, 857, 892, 1019, 1296
DpnII GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
DrdI GACNNNNNNGTC 1 cut(s) 1235
DseDI GACNNNNNNGTC 1 cut(s) 1235
Eam1104I CTCTTC 2 cut(s) 165, 311
EarI CTCTTC 2 cut(s) 165, 311
EciI GGCGGA 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 575
Eco31I GGTCTC 2 cut(s) 496, 602
Eco47I GGWCC 1 cut(s) 1174
Eco57I CTGAAG 3 cut(s) 402, 429, 444
Eco88I CYCGRG 1 cut(s) 260
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoO109I RGGNCCY 1 cut(s) 1174
EcoRII CCWGG 1 cut(s) 1315
EcoT14I CCWWGG 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 575
Esp3I CGTCTC 1 cut(s) 428
FaeI CATG 2 cut(s) 695, 1011
FalI AAGNNNNNCTT 4 cut(s) 492, 524, 906, 938
FaqI GGGAC 1 cut(s) 1160
FatI CATG 2 cut(s) 691, 1007
FbaI TGATCA 1 cut(s) 1294
FblI GTMKAC 2 cut(s) 238, 696
Fnu4HI GCNGC 4 cut(s) 70, 936, 1037, 1056
FokI GGATG 2 cut(s) 136, 1039
Fsp4HI GCNGC 4 cut(s) 70, 936, 1037, 1056
GluI GCNGC 4 cut(s) 70, 936, 1037, 1056
GsuI CTGGAG 1 cut(s) 657
HaeIII GGCC 1 cut(s) 574
HapII CCGG 8 cut(s) 114, 194, 205, 702, 850, 1194, 1262, 1277
HgaI GACGC 3 cut(s) 160, 205, 707
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 2 cut(s) 695, 1011
HincII GTYRAC 2 cut(s) 697, 1302
HindII GTYRAC 2 cut(s) 697, 1302
HindIII AAGCTT 1 cut(s) 898
HpaI GTTAAC 1 cut(s) 1302
HpaII CCGG 8 cut(s) 114, 194, 205, 702, 850, 1194, 1262, 1277
Hpy166II GTNNAC 4 cut(s) 239, 697, 778, 1302
Hpy188III TCNNGA 9 cut(s) 164, 205, 262, 462, 471, 859, 1015, 1097, 1292
Hpy8I GTNNAC 4 cut(s) 239, 697, 778, 1302
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 6 cut(s) 265, 377, 453, 468, 597, 1058
HpyCH4IV ACGT 3 cut(s) 211, 780, 960
HpyCH4V TGCA 6 cut(s) 222, 784, 991, 1055, 1135, 1243
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 819, 1036, 1203, 1218
HpyF3I CTNAG 3 cut(s) 887, 1032, 1213
HpySE526I ACGT 3 cut(s) 211, 780, 960
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 2 cut(s) 695, 1011
KflI GGGWCCC 1 cut(s) 1174
Kpn2I TCCGGA 1 cut(s) 204
KpnI GGTACC 1 cut(s) 421
KroI GCCGGC 1 cut(s) 701
KroNI GCCGGC 1 cut(s) 703
Ksp22I TGATCA 1 cut(s) 1294
KspAI GTTAAC 1 cut(s) 1302
Kzo9I GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
LmnI GCTCC 3 cut(s) 116, 141, 874
Lsp1109I GCAGC 3 cut(s) 81, 947, 1067
LweI GCATC 1 cut(s) 1017
MaeII ACGT 3 cut(s) 211, 780, 960
MaeIII GTNAC 5 cut(s) 332, 527, 604, 625, 838
MalI GATC 9 cut(s) 399, 410, 466, 544, 645, 857, 892, 1019, 1296
MbiI CCGCTC 1 cut(s) 1039
MboI GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
MboII GAAGA 8 cut(s) 152, 176, 298, 301, 509, 726, 1073, 1280
MflI RGATCY 3 cut(s) 408, 542, 890
MhlI GDGCHC 1 cut(s) 95
MlyI GAGTC 3 cut(s) 98, 559, 1329
MmeI TCCRAC 5 cut(s) 113, 273, 313, 520, 1069
MreI CGCCGGCG 1 cut(s) 701
MroI TCCGGA 1 cut(s) 204
MroNI GCCGGC 1 cut(s) 701
MseI TTAA 4 cut(s) 35, 510, 1118, 1301
MspA1I CMGCKG 1 cut(s) 938
MspI CCGG 8 cut(s) 114, 194, 205, 702, 850, 1194, 1262, 1277
MspR9I CCNGG 2 cut(s) 1262, 1317
MvaI CCWGG 1 cut(s) 1317
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 5 cut(s) 78, 819, 1036, 1203, 1218
NaeI GCCGGC 1 cut(s) 703
NciI CCSGG 1 cut(s) 1262
NdeII GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
NgoMIV GCCGGC 1 cut(s) 701
NlaIII CATG 2 cut(s) 695, 1011
NlaIV GGNNCC 5 cut(s) 419, 544, 1126, 1175, 1176
PaeR7I CTCGAG 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 703
PfeI GAWTC 7 cut(s) 5, 228, 368, 708, 761, 862, 1077
PflFI GACNNNGTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 1316
PfoI TCCNGGA 1 cut(s) 1315
PinAI ACCGGT 2 cut(s) 849, 1276
PkrI GCNGC 4 cut(s) 71, 937, 1038, 1057
PleI GAGTC 3 cut(s) 98, 558, 1328
PpsI GAGTC 3 cut(s) 98, 558, 1328
Ppu21I YACGTR 1 cut(s) 781
PpuMI RGGWCCY 1 cut(s) 1174
Psp1406I AACGTT 1 cut(s) 960
Psp5II RGGWCCY 1 cut(s) 1174
Psp6I CCWGG 1 cut(s) 1315
PspGI CCWGG 1 cut(s) 1315
PspN4I GGNNCC 5 cut(s) 419, 544, 1126, 1175, 1176
PspPI GGNCC 1 cut(s) 1174
PspPPI RGGWCCY 1 cut(s) 1174
PstNI CAGNNNCTG 1 cut(s) 1141
PsuI RGATCY 3 cut(s) 408, 542, 890
PsyI GACNNNGTC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SalI GTCGAC 1 cut(s) 695
SaqAI TTAA 4 cut(s) 35, 510, 1118, 1301
SatI GCNGC 4 cut(s) 70, 936, 1037, 1056
Sau3AI GATC 9 cut(s) 397, 408, 464, 542, 643, 855, 890, 1017, 1294
Sau96I GGNCC 1 cut(s) 1174
SchI GAGTC 3 cut(s) 98, 559, 1329
ScrFI CCNGG 2 cut(s) 1262, 1317
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 1 cut(s) 1017
SfcI CTRYAG 2 cut(s) 232, 808
Sfr274I CTCGAG 1 cut(s) 260
SgrAI CRCCGGYG 2 cut(s) 701, 1276
SinI GGWCC 1 cut(s) 1174
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 106, 260
SmoI CTYRAG 2 cut(s) 106, 260
SsiI CCGC 5 cut(s) 169, 705, 1037, 1206, 1221
StyD4I CCNGG 2 cut(s) 1260, 1315
StyI CCWWGG 1 cut(s) 575
TaiI ACGT 3 cut(s) 214, 783, 963
TaqI TCGA 6 cut(s) 261, 590, 696, 1014, 1020, 1080
TauI GCSGC 1 cut(s) 1039
TfiI GAWTC 7 cut(s) 5, 228, 368, 708, 761, 862, 1077
Tru1I TTAA 4 cut(s) 35, 510, 1118, 1301
Tru9I TTAA 4 cut(s) 35, 510, 1118, 1301
TscAI CASTG 1 cut(s) 1204
TseI GCWGC 3 cut(s) 69, 935, 1055
TspDTI ATGAA 3 cut(s) 7, 818, 849
TspGWI ACGGA 3 cut(s) 535, 1039, 1245
TspRI CASTG 1 cut(s) 1204
Tth111I GACNNNGTC 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 1316
VpaK11BI GGWCC 1 cut(s) 1174
XagI CCTNNNNNAGG 1 cut(s) 591
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 238, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.