Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014215

Physical Location & Seq

Genomic Coordinates Reverse (-)

7736992 .. 7739408

Gene Structure 2417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGAAGCCTTTCCTTCCTCTCTACCATTTCCTTTCTCATACATGTTCAACGCTGCTACTAGCGCTGGACCTAGTGCTTCTCTTGCCAACACCATATCAAGTGATCCATGGATGGACCCTAGAATATGGAGTAGACTCCCACGGCAGCTTCTAGATCGTGTTATCGCCTTTCTTCCACCGACTGCCTTCTTTCGAGCCAGGTGCGTCTGCAAGAGATGGTATGGTCTCTTGTTCACTAATGCCTTCCTTGAGTTGTACCTCCACCTCACTCATCGAAAGCGCCACTGGTTCGTCTTCTTCAAGCTAAAGAGCCCTAAGAACAGCTTCGTTTACAAGAATGGAGGGAGTAGTAGTAGCAGTAGTAGTGGTAGTAACACTACTAACATTTGGGAAGGGTATCTCTATGACCCTTATGAGCTTGCATGGTACAAACTCACTTTTCCTCTTGTTCCATCTGGTTTCTCTCCATCTGCTTCTTCAGGTGGTTTGATCTGTTGGGTTTCTGAAGAGGCTGGTCCAAAGAGTCTCTTTCTCTCCAACCCAATTGTGGGTTCTTTGACCCAATTGCCTCCAACTCTGAGGTCAAGGCTCTGCCCTTCCATAGGCCTTAGTGTCACCCCCACATCAATTGATGTCACTGTTGCTGGAGATGACATGATCTCTCCCTATGCTGTGAAGAACTTGACTTCTGAAAGCTTCCACATAGATGGTGGTGGGTTTTTCTCACTGTGGGGAATCAACTCTTCTCTGCCAAGGCTTTGTAGTTTTGAGTCAGGAAGAATGGTTCATCTTCATGGGAGACAATACTCCATGAACTACAGCCCTTTCAGTGTCTTGGCCTATGATGTGGTAGAAAACAATTGGTGGAAGATTCAGGCTCCCATGAGAAGGTTTCTGAGGTTTCCAAGCTTGGTGGAGAGCAGTGGAAAGCTGCTTTTGGTTGCTGCAGTTGAGAAGAACAGGCTGAATGTGCCTAAAAGCTTGAGGATTTGGGGCTTGCAGTCTTGTGGAACAACTTGGTTTGAGATGGAGAGGATGCCACAGCAGCTTTATGTTCAGTTTGCAACACTTGAAAATGGAAACGGGTTCCATTGTGTAGGCCATGGAGAGTTCATTATCATCATAATTCCGGGTTCTGGTAAGGCTTTGCAGTTTGACATGGAAAACAAACTGTGGCAATGGGTTCCTCCATGCCCTTATGTTCAATATGGTGGTGAGGCCGATGGTGATTTGCATGGTTTTGCTTATGAACCAAGGCTCGCAACACCAGTCACTGTGCTTCTGGATCAGTTGACTAATCCATTCCAGTCTTTTGGTGTGGTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

443

Amino Acids

49.55

Weight (kDa)

8.68

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	43 - 76	2.8e-07	F-box domain
F-box-like	PF12937	43 - 80	1.1e-06	F-box-like
Beta-prop_KIB1-4	PF03478	142 - 347	5.1e-07	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30950
fragaria_vesca	FvH4_3g03990 FvH4_3g12960
malus_domestica	MD05G1246800.v1.1 MD10G1227400.v1.1
prunus_persica	Prupe.4G117600_v2.0.a1 Prupe.4G117800_v2.0.a1
pyrus_communis	pycom05g22270
rosa_chinensis	RchiOBHm_Chr5g0021071
rosa_laevigata	RLG00000032581
rosa_multiflora	Rmu_ssc0000244.1_g000018
rosa_roxburghii	Rroxscaffold_1G00057390
rosa_rugosa	Rorug05G0064100
rosa_samantha	Rh5BG153400 Rh5CG166300 Rh5DG153000
rosa_wichuraiana	Rw5G013660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	133
AclWI	GGATC	2 cut(s)	98, 1293
AcuI	CTGAAG	2 cut(s)	462, 525
AfaI	GTAC	2 cut(s)	257, 428
AfeI	AGCGCT	1 cut(s)	64
AfiI	CCNNNNNNNGG	5 cut(s)	547, 548, 602, 888, 1136
AflIII	ACRYGT	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	49, 301, 1073, 1205
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	535, 567
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
AluBI	AGCT	9 cut(s)	148, 304, 324, 418, 696, 909, 931, 981, 1048
AluI	AGCT	9 cut(s)	148, 304, 324, 418, 696, 909, 931, 981, 1048
Alw26I	GTCTC	3 cut(s)	230, 530, 793
AlwI	GGATC	2 cut(s)	98, 1293
AlwNI	CAGNNNCTG	1 cut(s)	1274
Aor51HI	AGCGCT	1 cut(s)	64
AoxI	GGCC	4 cut(s)	604, 837, 1099, 1218
ApeKI	GCWGC	5 cut(s)	53, 145, 931, 944, 1045
Asp700I	GAANNNNTTC	2 cut(s)	9, 323
AspLEI	GCGC	2 cut(s)	65, 282
AspS9I	GGNCC	3 cut(s)	68, 115, 515
AsuC2I	CCSGG	1 cut(s)	1131
AsuHPI	GGTGA	3 cut(s)	607, 1226, 1238
AvaII	GGWCC	3 cut(s)	68, 115, 515
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	286
BbvI	GCAGC	5 cut(s)	40, 157, 918, 931, 1057
BccI	CCATC	7 cut(s)	106, 210, 460, 475, 701, 1021, 1217
BceAI	ACGGC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	183, 217
BciT130I	CCWGG	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	1131
BcoDI	GTCTC	3 cut(s)	230, 530, 793
BfaI	CTAG	5 cut(s)	60, 72, 120, 152, 1327
BfmI	CTRYAG	2 cut(s)	817, 945
BfoI	RGCGCY	2 cut(s)	66, 283
BisI	GCNGC	5 cut(s)	54, 146, 932, 945, 1046
BlsI	GCNGC	5 cut(s)	55, 147, 933, 946, 1047
Bme1390I	CCNGG	2 cut(s)	199, 1131
Bme18I	GGWCC	3 cut(s)	68, 115, 515
BmgT120I	GGNCC	3 cut(s)	68, 115, 515
BmiI	GGNNCC	4 cut(s)	117, 879, 1088, 1185
BmrFI	CCNGG	2 cut(s)	199, 1131
BmsI	GCATC	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	269, 1003
BpuMI	CCSGG	1 cut(s)	1131
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	107, 140, 752, 1102, 1253
BsaXI	ACNNNNNCTCC	2 cut(s)	337, 367
Bsc4I	CCNNNNNNNGG	5 cut(s)	547, 548, 602, 888, 1136
Bse1I	ACTGG	3 cut(s)	290, 1268, 1306
Bse3DI	GCAATG	1 cut(s)	1184
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	5 cut(s)	107, 140, 752, 1102, 1253
BseGI	GGATG	2 cut(s)	117, 1041
BseLI	CCNNNNNNNGG	5 cut(s)	547, 548, 602, 888, 1136
BseMI	GCAATG	1 cut(s)	1184
BseMII	CTCAG	2 cut(s)	569, 887
BseNI	ACTGG	3 cut(s)	290, 1268, 1306
BseXI	GCAGC	5 cut(s)	40, 157, 918, 931, 1057
BshFI	GGCC	4 cut(s)	606, 839, 1101, 1220
BsiSI	CCGG	1 cut(s)	1130
BslI	CCNNNNNNNGG	5 cut(s)	547, 548, 602, 888, 1136
BsmAI	GTCTC	3 cut(s)	230, 530, 793
BsnI	GGCC	4 cut(s)	606, 839, 1101, 1220
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	103, 154, 489, 657, 1285
Bsp19I	CCATGG	2 cut(s)	107, 1102
BspANI	GGCC	4 cut(s)	606, 839, 1101, 1220
BspCNI	CTCAG	2 cut(s)	570, 888
BspLI	GGNNCC	4 cut(s)	117, 879, 1088, 1185
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	2 cut(s)	98, 1293
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	1184
BsrI	ACTGG	3 cut(s)	290, 1268, 1306
BssECI	CCNNGG	5 cut(s)	107, 140, 752, 1102, 1253
BssMI	GATC	5 cut(s)	103, 154, 489, 657, 1285
BssT1I	CCWWGG	4 cut(s)	107, 752, 1102, 1253
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	4 cut(s)	640, 729, 1173, 1276
Bst6I	CTCTTC	2 cut(s)	501, 748
BstC8I	GCNNGC	3 cut(s)	420, 998, 1260
BstDEI	CTNAG	4 cut(s)	315, 578, 608, 896
BstDSI	CCRYGG	3 cut(s)	107, 140, 1102
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	117, 1041
BstH2I	RGCGCY	2 cut(s)	66, 283
BstHHI	GCGC	2 cut(s)	65, 282
BstKTI	GATC	5 cut(s)	106, 157, 492, 660, 1288
BstMAI	GTCTC	3 cut(s)	230, 530, 793
BstMBI	GATC	5 cut(s)	103, 154, 489, 657, 1285
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 83, 970, 1045
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	2 cut(s)	197, 1129
BstSFI	CTRYAG	2 cut(s)	817, 945
BstV1I	GCAGC	5 cut(s)	40, 157, 918, 931, 1057
BstV2I	GAAGAC	1 cut(s)	286
BstXI	CCANNNNNNTGG	2 cut(s)	707, 1313
BsuRI	GGCC	4 cut(s)	606, 839, 1101, 1220
BtgI	CCRYGG	3 cut(s)	107, 140, 1102
BtsCI	GGATG	2 cut(s)	117, 1041
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	6 cut(s)	283, 636, 725, 835, 928, 1272
Cac8I	GCNNGC	3 cut(s)	420, 998, 1260
CaiI	CAGNNNCTG	1 cut(s)	1274
CfoI	GCGC	2 cut(s)	65, 282
Cfr13I	GGNCC	3 cut(s)	68, 115, 515
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	256, 427
CspCI	CAANNNNNGTGG	4 cut(s)	610, 645, 894, 929
CviQI	GTAC	2 cut(s)	256, 427
DdeI	CTNAG	4 cut(s)	315, 578, 608, 896
DpnI	GATC	5 cut(s)	105, 156, 491, 659, 1287
DpnII	GATC	5 cut(s)	103, 154, 489, 657, 1285
Eam1104I	CTCTTC	2 cut(s)	501, 748
EarI	CTCTTC	2 cut(s)	501, 748
Eco130I	CCWWGG	4 cut(s)	107, 752, 1102, 1253
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	68, 115, 515
Eco47III	AGCGCT	1 cut(s)	64
Eco57I	CTGAAG	2 cut(s)	462, 525
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	4 cut(s)	107, 752, 1102, 1253
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	4 cut(s)	107, 752, 1102, 1253
FalI	AAGNNNNNCTT	4 cut(s)	308, 340, 512, 544
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	5 cut(s)	54, 146, 932, 945, 1046
FokI	GGATG	2 cut(s)	124, 1048
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	54, 146, 932, 945, 1046
FspBI	CTAG	5 cut(s)	60, 72, 120, 152, 1327
GlaI	GCGC	2 cut(s)	64, 281
GluI	GCNGC	5 cut(s)	54, 146, 932, 945, 1046
GsuI	CTGGAG	1 cut(s)	666
HaeII	RGCGCY	2 cut(s)	66, 283
HaeIII	GGCC	4 cut(s)	606, 839, 1101, 1220
HapII	CCGG	1 cut(s)	1130
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	65, 282
Hin6I	GCGC	2 cut(s)	63, 280
HinP1I	GCGC	2 cut(s)	63, 280
HincII	GTYRAC	1 cut(s)	1293
HindII	GTYRAC	1 cut(s)	1293
HindIII	AAGCTT	3 cut(s)	694, 907, 979
HinfI	GANTC	5 cut(s)	135, 523, 735, 770, 871
HpaII	CCGG	1 cut(s)	1130
HphI	GGTGA	3 cut(s)	607, 1226, 1238
Hpy166II	GTNNAC	5 cut(s)	134, 234, 331, 1293, 1324
Hpy188I	TCNGA	4 cut(s)	505, 579, 691, 897
Hpy188III	TCNNGA	3 cut(s)	152, 774, 1283
Hpy8I	GTNNAC	5 cut(s)	134, 234, 331, 1293, 1324
HpyAV	CCTTC	6 cut(s)	24, 196, 253, 386, 606, 882
HpyCH4III	ACNGT	4 cut(s)	640, 729, 1173, 1276
HpyCH4V	TGCA	7 cut(s)	210, 422, 947, 1000, 1064, 1150, 1234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 83, 970, 1045
HpyF3I	CTNAG	4 cut(s)	315, 578, 608, 896
HspAI	GCGC	2 cut(s)	63, 280
Kzo9I	GATC	5 cut(s)	103, 154, 489, 657, 1285
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	5 cut(s)	40, 157, 918, 931, 1057
LweI	GCATC	1 cut(s)	1026
MaeI	CTAG	5 cut(s)	60, 72, 120, 152, 1327
MaeIII	GTNAC	4 cut(s)	371, 613, 634, 1270
MalI	GATC	5 cut(s)	105, 156, 491, 659, 1287
MboI	GATC	5 cut(s)	103, 154, 489, 657, 1285
MfeI	CAATTG	4 cut(s)	543, 563, 627, 859
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	5 cut(s)	543, 563, 627, 859, 1125
MlyI	GAGTC	3 cut(s)	129, 532, 779
MmeI	TCCRAC	2 cut(s)	561, 596
MroXI	GAANNNNTTC	2 cut(s)	9, 323
MslI	CAYNNNNRTG	2 cut(s)	705, 792
MspI	CCGG	1 cut(s)	1130
MspR9I	CCNGG	2 cut(s)	199, 1131
MunI	CAATTG	4 cut(s)	543, 563, 627, 859
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	62, 83, 970, 1045
NciI	CCSGG	1 cut(s)	1131
NcoI	CCATGG	2 cut(s)	107, 1102
NdeII	GATC	5 cut(s)	103, 154, 489, 657, 1285
NlaIV	GGNNCC	4 cut(s)	117, 879, 1088, 1185
NmuCI	GTSAC	3 cut(s)	613, 634, 1270
NspI	RCATGY	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	606
PciI	ACATGT	1 cut(s)	42
PdmI	GAANNNNTTC	2 cut(s)	9, 323
PfeI	GAWTC	2 cut(s)	735, 871
PkrI	GCNGC	5 cut(s)	55, 147, 933, 946, 1047
PleI	GAGTC	3 cut(s)	129, 531, 778
PpsI	GAGTC	3 cut(s)	129, 531, 778
PscI	ACATGT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	4 cut(s)	117, 879, 1088, 1185
PspPI	GGNCC	3 cut(s)	68, 115, 515
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	1 cut(s)	1274
RsaI	GTAC	2 cut(s)	257, 428
RsaNI	GTAC	2 cut(s)	256, 427
RseI	CAYNNNNRTG	2 cut(s)	705, 792
SatI	GCNGC	5 cut(s)	54, 146, 932, 945, 1046
Sau3AI	GATC	5 cut(s)	103, 154, 489, 657, 1285
Sau96I	GGNCC	3 cut(s)	68, 115, 515
SchI	GAGTC	3 cut(s)	129, 532, 779
ScrFI	CCNGG	2 cut(s)	199, 1131
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	1 cut(s)	1026
SfcI	CTRYAG	2 cut(s)	817, 945
SinI	GGWCC	3 cut(s)	68, 115, 515
SmiMI	CAYNNNNRTG	2 cut(s)	705, 792
SmlI	CTYRAG	2 cut(s)	248, 982
SmoI	CTYRAG	2 cut(s)	248, 982
Sse9I	AATT	5 cut(s)	543, 563, 627, 859, 1125
SseBI	AGGCCT	1 cut(s)	606
SspMI	CTAG	5 cut(s)	60, 72, 120, 152, 1327
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	197, 1129
StyI	CCWWGG	4 cut(s)	107, 752, 1102, 1253
TaaI	ACNGT	4 cut(s)	640, 729, 1173, 1276
TaqI	TCGA	2 cut(s)	193, 274
TasI	AATT	5 cut(s)	543, 563, 627, 859, 1125
TfiI	GAWTC	2 cut(s)	735, 871
TscAI	CASTG	6 cut(s)	290, 643, 732, 835, 928, 1279
TseFI	GTSAC	3 cut(s)	613, 634, 1270
TseI	GCWGC	5 cut(s)	53, 145, 931, 944, 1045
Tsp45I	GTSAC	3 cut(s)	613, 634, 1270
TspDTI	ATGAA	5 cut(s)	776, 782, 827, 1102, 1263
TspRI	CASTG	6 cut(s)	290, 643, 732, 835, 928, 1279
VpaK11BI	GGWCC	3 cut(s)	68, 115, 515
XagI	CCTNNNNNAGG	1 cut(s)	600
XbaI	TCTAGA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	2 cut(s)	544, 707
XmiI	GTMKAC	1 cut(s)	133
XmnI	GAANNNNTTC	2 cut(s)	9, 323
XspI	CTAG	5 cut(s)	60, 72, 120, 152, 1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.