Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014215

Physical Location & Seq

Genomic Coordinates Reverse (-)

2224636 .. 2225868

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGAAGCCAACACCATATCAAAAGATCCATGGATGGACCCTATAATATGGAGTAGACTCCCACGCCAGCTTCTCGATCGGGTGATCGCCCTTCTTCCGCCGCCTGCCTTCTTTCGAAGCCGCTGCGTCTGCAAGAGATGGTATGGTCTCTTGTTCACCAATCCCTTCGTTGAGTTGTACCTCCAGCTCACTCATCGAAAGCGCCATTGGTTCCTCTTCTTCAAGCTAAAGAGCCCCAAGAACAGCTTCATTTACAAGAATGGAGGGATTAGTACTAGTAGTAGTAACACTACTACTAACATTCGTGAAGGGTATCTCTTTGACCCTTATGAGCTTGCTTGGTACAAACTCTCTTTCCCTCTTGTTCCATCTGGTTTCTCTCCAACTGCTTCTTCAGGTGGTTTGATCTGTTGGATTTCTGAAGAGGCTGGTCCAAAGAGTCTCTTTCTCTCCAACCCAATTGTTAGTTCTTTGACCCAATTGCCTCAAACTCTGAGGTCAAGGCTCGGCCCTTCCATAGGCCTAAGTGTCACCCCTACATCAATTGATGTCACTGTTGCTGGAGATGACATGATCTCTCCCTATTCTGTGAAGAACTTGACCTACGAAAGCTTCCACATAGATGGTCGTTGGCTTTTCTCACTGTGGGAAATCAATGGTTCTCTGCCAAGGCTTTGTAATTTTGAGTCAGGAAGAATGGTTCATCTTCATGGGAGACAATACTCCATGAGCTACAGCCCTTTCAGTGTCTTGGCCTATGATTTGTTCGCCAACATGTGGTGGAATATCGAGGCTCCCATGAAAAAGTATCTGAGGTTTCCAAGCTTGGTGGATAGTAGTGGAAAGCTGCTGTTGGTTGCTGCAGTTAACAGAAATAAGCTCAAAGTGCCTAAAAGCTTGAGGATTTGGGGCTTGCAGTCTTGTGGAACAAGTTGGTTTGAGATGGAGAGGATGCCAGAGCAGCTTTATGATCAGTCTGCAACTCTCGAAAACGGAACCGGGTTCCATTGTGTAGGACATGGAGAGTTCATTATCATCATGATTCTGGGTTCCGGTACGGCTTTGCAGTTTGACATGGAAAGCAAACTGTGGCAATGGGTTCCTCCATGCCCTTATGTTCAATATGGTGGTGGGGGTGATGGTGATTTGCATGGTTTTGCTTATGAACCAACACTTGCTACACCAGTCACTGTGCTTCTGGATCCATTCCAGTCTTTTGGTGTGATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

411

Amino Acids

46.41

Weight (kDa)

8.56

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 51	3.5e-06	F-box domain
Beta-prop_KIB1-4	PF03478	114 - 320	1e-05	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30950
fragaria_vesca	FvH4_3g03990 FvH4_3g12960
malus_domestica	MD05G1246800.v1.1 MD10G1227400.v1.1
prunus_persica	Prupe.4G117600_v2.0.a1 Prupe.4G117800_v2.0.a1
pyrus_communis	pycom05g22270
rosa_chinensis	RchiOBHm_Chr5g0021071
rosa_laevigata	RLG00000032581
rosa_multiflora	Rmu_ssc0000244.1_g000018
rosa_roxburghii	Rroxscaffold_1G00057390
rosa_rugosa	Rorug05G0064100
rosa_samantha	Rh5BG153400 Rh5CG166300 Rh5DG153000
rosa_wichuraiana	Rw5G013660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	777
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	3 cut(s)	98, 101, 121
AclWI	GGATC	3 cut(s)	20, 1196, 1209
AcuI	CTGAAG	2 cut(s)	378, 441
AfaI	GTAC	4 cut(s)	179, 274, 344, 1057
AfiI	CCNNNNNNNGG	2 cut(s)	518, 777
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	2 cut(s)	223, 1121
AhlI	ACTAGT	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	8 cut(s)	190, 222, 230, 262, 376, 408, 451, 483
AloI	GAACNNNNNNTCC	2 cut(s)	684, 716
Alw26I	GTCTC	3 cut(s)	152, 446, 709
AlwI	GGATC	3 cut(s)	20, 1196, 1209
AlwNI	CAGNNNCTG	1 cut(s)	1190
AoxI	GGCC	3 cut(s)	508, 520, 753
ApeKI	GCWGC	4 cut(s)	123, 847, 860, 961
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	37, 431, 509
AsuC2I	CCSGG	1 cut(s)	1000
AsuHPI	GGTGA	5 cut(s)	94, 148, 523, 1148, 1154
AsuII	TTCGAA	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	37, 431
BamHI	GGATCC	1 cut(s)	1201
BanII	GRGCYC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	110, 834, 847, 973
BccI	CCATC	6 cut(s)	28, 132, 376, 617, 937, 1133
BceAI	ACGGC	1 cut(s)	1074
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	1000
BcoDI	GTCTC	3 cut(s)	152, 446, 709
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	2 cut(s)	276, 1231
BfmI	CTRYAG	2 cut(s)	733, 861
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	6 cut(s)	101, 121, 124, 848, 861, 962
BlsI	GCNGC	6 cut(s)	102, 122, 125, 849, 862, 963
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	1000
Bme18I	GGWCC	2 cut(s)	37, 431
BmgT120I	GGNCC	3 cut(s)	37, 431, 509
BmiI	GGNNCC	8 cut(s)	39, 212, 795, 997, 1004, 1051, 1101, 1203
BmrFI	CCNGG	1 cut(s)	1000
BmsI	GCATC	1 cut(s)	942
BpmI	CTGGAG	2 cut(s)	167, 582
Bpu14I	TTCGAA	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	919
BpuMI	CCSGG	1 cut(s)	1000
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	29, 668
BsaWI	WCCGGW	1 cut(s)	1052
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 777
Bse1I	ACTGG	2 cut(s)	1184, 1210
Bse3DI	GCAATG	1 cut(s)	1100
BseDI	CCNNGG	2 cut(s)	29, 668
BseGI	GGATG	2 cut(s)	39, 957
BseLI	CCNNNNNNNGG	2 cut(s)	518, 777
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	2 cut(s)	485, 803
BseNI	ACTGG	2 cut(s)	1184, 1210
BseXI	GCAGC	4 cut(s)	110, 834, 847, 973
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	510, 522, 755
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	999, 1053
BslI	CCNNNNNNNGG	2 cut(s)	518, 777
BsmAI	GTCTC	3 cut(s)	152, 446, 709
BsnI	GGCC	3 cut(s)	510, 522, 755
Bso31I	GGTCTC	1 cut(s)	152
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	3 cut(s)	98, 101, 121
BspANI	GGCC	3 cut(s)	510, 522, 755
BspCNI	CTCAG	2 cut(s)	486, 804
BspHI	TCATGA	1 cut(s)	1038
BspLI	GGNNCC	8 cut(s)	39, 212, 795, 997, 1004, 1051, 1101, 1203
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	3 cut(s)	20, 1196, 1209
BspT104I	TTCGAA	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	1100
BsrI	ACTGG	2 cut(s)	1184, 1210
BssECI	CCNNGG	2 cut(s)	29, 668
BssMI	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
BssT1I	CCWWGG	2 cut(s)	29, 668
Bst4CI	ACNGT	4 cut(s)	556, 645, 1089, 1192
Bst6I	CTCTTC	2 cut(s)	221, 417
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	4 cut(s)	68, 105, 336, 914
BstDEI	CTNAG	3 cut(s)	494, 524, 812
BstDSI	CCRYGG	1 cut(s)	29
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	39, 957
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	7 cut(s)	28, 79, 87, 408, 576, 973, 1204
BstMAI	GTCTC	3 cut(s)	152, 446, 709
BstMBI	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	3 cut(s)	129, 886, 961
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	1 cut(s)	998
BstSFI	CTRYAG	2 cut(s)	733, 861
BstV1I	GCAGC	4 cut(s)	110, 834, 847, 973
BstX2I	RGATCY	2 cut(s)	25, 1201
BstXI	CCANNNNNNTGG	2 cut(s)	623, 1217
BstYI	RGATCY	2 cut(s)	25, 1201
BsuRI	GGCC	3 cut(s)	510, 522, 755
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	39, 957
BtsIMutI	CAGTG	4 cut(s)	552, 641, 751, 1188
Cac8I	GCNNGC	4 cut(s)	68, 105, 336, 914
CaiI	CAGNNNCTG	1 cut(s)	1190
CciI	TCATGA	1 cut(s)	1038
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	37, 431, 509
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	4 cut(s)	178, 273, 343, 1056
CspCI	CAANNNNNGTGG	2 cut(s)	810, 845
CviQI	GTAC	4 cut(s)	178, 273, 343, 1056
DdeI	CTNAG	3 cut(s)	494, 524, 812
DpnI	GATC	7 cut(s)	27, 78, 86, 407, 575, 972, 1203
DpnII	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
Eam1104I	CTCTTC	2 cut(s)	221, 417
EarI	CTCTTC	2 cut(s)	221, 417
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	29, 668
Eco147I	AGGCCT	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	37, 431
Eco57I	CTGAAG	2 cut(s)	378, 441
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoT14I	CCWWGG	2 cut(s)	29, 668
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	2 cut(s)	29, 668
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 428, 460
FbaI	TGATCA	1 cut(s)	970
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	6 cut(s)	101, 121, 124, 848, 861, 962
FokI	GGATG	2 cut(s)	46, 964
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	6 cut(s)	101, 121, 124, 848, 861, 962
FspBI	CTAG	2 cut(s)	276, 1231
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	101, 121, 124, 848, 861, 962
GsuI	CTGGAG	2 cut(s)	167, 582
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	510, 522, 755
HapII	CCGG	2 cut(s)	999, 1053
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HindIII	AAGCTT	3 cut(s)	610, 823, 895
HinfI	GANTC	4 cut(s)	57, 439, 686, 1042
HpaI	GTTAAC	1 cut(s)	868
HpaII	CCGG	2 cut(s)	999, 1053
HphI	GGTGA	5 cut(s)	94, 148, 523, 1148, 1154
Hpy166II	GTNNAC	3 cut(s)	56, 156, 868
Hpy188I	TCNGA	3 cut(s)	421, 495, 813
Hpy188III	TCNNGA	6 cut(s)	74, 305, 690, 986, 1039, 1199
Hpy8I	GTNNAC	3 cut(s)	56, 156, 868
HpyAV	CCTTC	5 cut(s)	101, 118, 175, 302, 522
HpyCH4III	ACNGT	4 cut(s)	556, 645, 1089, 1192
HpyCH4V	TGCA	6 cut(s)	132, 863, 916, 980, 1066, 1150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	129, 886, 961
HpyF3I	CTNAG	3 cut(s)	494, 524, 812
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	970
KspAI	GTTAAC	1 cut(s)	868
Kzo9I	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	4 cut(s)	110, 834, 847, 973
LweI	GCATC	1 cut(s)	942
MaeI	CTAG	2 cut(s)	276, 1231
MaeIII	GTNAC	4 cut(s)	284, 529, 550, 1186
MalI	GATC	7 cut(s)	27, 78, 86, 407, 575, 972, 1203
MboI	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
MboII	GAAGA	8 cut(s)	86, 208, 211, 384, 434, 604, 698, 705
MfeI	CAATTG	3 cut(s)	459, 479, 543
MflI	RGATCY	2 cut(s)	25, 1201
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	4 cut(s)	459, 479, 543, 679
MlyI	GAGTC	3 cut(s)	51, 448, 695
MmeI	TCCRAC	3 cut(s)	392, 407, 477
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	2 cut(s)	867, 1227
MslI	CAYNNNNRTG	2 cut(s)	621, 708
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	999, 1053
MspR9I	CCNGG	1 cut(s)	1000
MunI	CAATTG	3 cut(s)	459, 479, 543
MwoI	GCNNNNNNNGC	3 cut(s)	129, 886, 961
NciI	CCSGG	1 cut(s)	1000
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
NlaIV	GGNNCC	8 cut(s)	39, 212, 795, 997, 1004, 1051, 1101, 1203
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	3 cut(s)	529, 550, 1186
NspI	RCATGY	1 cut(s)	778
NspV	TTCGAA	1 cut(s)	115
PagI	TCATGA	1 cut(s)	1038
PceI	AGGCCT	1 cut(s)	522
PciI	ACATGT	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	1042
PflMI	CCANNNNNTGG	1 cut(s)	777
PkrI	GCNGC	6 cut(s)	102, 122, 125, 849, 862, 963
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	3 cut(s)	51, 447, 694
PpsI	GAGTC	3 cut(s)	51, 447, 694
PscI	ACATGT	1 cut(s)	774
PspN4I	GGNNCC	8 cut(s)	39, 212, 795, 997, 1004, 1051, 1101, 1203
PspPI	GGNCC	3 cut(s)	37, 431, 509
PsrI	GAACNNNNNNTAC	2 cut(s)	587, 619
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	1190
PsuI	RGATCY	2 cut(s)	25, 1201
PvuI	CGATCG	1 cut(s)	79
RsaI	GTAC	4 cut(s)	179, 274, 344, 1057
RsaNI	GTAC	4 cut(s)	178, 273, 343, 1056
RseI	CAYNNNNRTG	2 cut(s)	621, 708
SaqAI	TTAA	2 cut(s)	867, 1227
SatI	GCNGC	6 cut(s)	101, 121, 124, 848, 861, 962
Sau3AI	GATC	7 cut(s)	25, 76, 84, 405, 573, 970, 1201
Sau96I	GGNCC	3 cut(s)	37, 431, 509
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	3 cut(s)	51, 448, 695
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	1 cut(s)	942
SfcI	CTRYAG	2 cut(s)	733, 861
SfuI	TTCGAA	1 cut(s)	115
SinI	GGWCC	2 cut(s)	37, 431
SmiMI	CAYNNNNRTG	2 cut(s)	621, 708
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	4 cut(s)	459, 479, 543, 679
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	3 cut(s)	98, 101, 121
SspMI	CTAG	2 cut(s)	276, 1231
StuI	AGGCCT	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	998
StyI	CCWWGG	2 cut(s)	29, 668
TaaI	ACNGT	4 cut(s)	556, 645, 1089, 1192
TaqI	TCGA	5 cut(s)	75, 115, 196, 789, 987
TasI	AATT	4 cut(s)	459, 479, 543, 679
TatI	WGTACW	1 cut(s)	272
TauI	GCSGC	2 cut(s)	103, 123
TfiI	GAWTC	1 cut(s)	1042
Tru1I	TTAA	2 cut(s)	867, 1227
Tru9I	TTAA	2 cut(s)	867, 1227
TscAI	CASTG	4 cut(s)	559, 648, 751, 1195
TseFI	GTSAC	3 cut(s)	529, 550, 1186
TseI	GCWGC	4 cut(s)	123, 847, 860, 961
Tsp45I	GTSAC	3 cut(s)	529, 550, 1186
TspDTI	ATGAA	6 cut(s)	238, 692, 698, 815, 1018, 1179
TspGWI	ACGGA	1 cut(s)	1008
TspRI	CASTG	4 cut(s)	559, 648, 751, 1195
Van91I	CCANNNNNTGG	1 cut(s)	777
VpaK11BI	GGWCC	2 cut(s)	37, 431
XagI	CCTNNNNNAGG	1 cut(s)	516
XceI	RCATGY	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	2 cut(s)	276, 1231
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.