Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014215

Physical Location & Seq

Genomic Coordinates Reverse (-)

16135533 .. 16136732

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGACCCTAGAATATGGAGTAGACTCCCACGCCAGCTACTCGATCGCGTTATCGCCCTTCTTCCACCGCCTGCCTTCTTTCGAGCCCGGTGTGTCTGTAAGAGATGGTATGGTCTCTTGTTCACCAATGCCTTCCTCGAGTTGTACATCCAGCTCACTCAGCGCCAGCGCCATTGGTTCCTCTTCTTCAAGCAAAAGAGCCCCAAGAACAGCTACATTTACAGGAATGGAGGGAACAGTAGTAACACTACTAACATTTGTGAAGGGTACCTCTTTGACCCTTATGAGCTTGCATGGTACCGCCTCTCTTTTCCTCTTGTTCCGTCTGGGTTCTCTCCATGTGCTTCTTCAGGTGGTTTGATCTGTTGGGTTTCTGAAGAGGCTGGTCCAAAAAGTCTCATTCTCTCCAACCCAATTGTTGGTTCTGTGACCCAATTACCTCCAACTCTGAGGTCAAGGCTCTGCCCTTCCATAGGCCTAAGTGTCACCCCTACATCGATTGATGTCACTGTTGCTGGAGATGACATGATCTCTCCATATGCTGTGAAGAACTTGACTTCTGAAAGCTTCCACATAGATGGTGGTGGGTTTTTCTCACTCTGGGGAATCAACTCTTCTCTGCCAAGGCTTTGTAGTTTTGAGTCAGGAAGAATGGTTCATCTTCATGGAAGACTCTACTCCATGAACTACAGCCCTTTCAGTGTCTTGGCCTATGATGTGGCAGCAAACAATTGGTGGAAGATTCAGGCTCCCATGAGAAGGTTTCTGAGGTTTCCAAGCTTGGTGGAGAGCAGTGGAAAGCTCCTGTTGGTTGCTGCTGTTGAGAAGAGCAGGCTGAATGTGCCTAAAAGCTTGAGGATTTGGGGATTGCAGTCTTGTGGAACAACTTGGTTTGAGATGGAGAGAATGCCACAGCAGCTTTATGTTCAGTTTGCAGCGATCGAAAAGGGAAACGGTTTCCATTGTGTTGGCAATGGAGAGTTCATTATTATCATGATTCCGGGTTCCGGTAAGGCTTTGCTGTTTGACATGTGCAGGAAACTGTGGCAATGGGTTCCTCCATGCCCTTATGTTCAATATGGTGGTGGGGGTGATGGTGATTTGCATGGTTTTGCGTATGAACCAAGACTTGCTACACCAGTCACTGTGCTTCTGGATCAGTTGACTAATCCATTCCAGTCTTTTAGTGTGGTTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006355 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009987 GO:0010468 GO:0010498 GO:0010556 GO:0016567 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0031323 GO:0031326 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

399

Amino Acids

44.92

Weight (kDa)

9.16

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	6 - 39	1e-06	F-box domain
F-box-like	PF12937	6 - 43	7.3e-06	F-box-like
Beta-prop_KIB1-4	PF03478	98 - 303	8.7e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30950
fragaria_vesca	FvH4_3g03990 FvH4_3g12960
malus_domestica	MD05G1246800.v1.1 MD10G1227400.v1.1
prunus_persica	Prupe.4G117600_v2.0.a1 Prupe.4G117800_v2.0.a1
pyrus_communis	pycom05g22270
rosa_chinensis	RchiOBHm_Chr5g0021071
rosa_laevigata	RLG00000032581
rosa_multiflora	Rmu_ssc0000244.1_g000018
rosa_roxburghii	Rroxscaffold_1G00057390
rosa_rugosa	Rorug05G0064100
rosa_samantha	Rh5BG153400 Rh5CG166300 Rh5DG153000
rosa_wichuraiana	Rw5G013660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	267, 297
AccB1I	GGYRCC	2 cut(s)	267, 297
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	22
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	68, 301
AclWI	GGATC	1 cut(s)	1164
AcuI	CTGAAG	2 cut(s)	333, 396
AfaI	GTAC	3 cut(s)	146, 269, 299
AfiI	CCNNNNNNNGG	4 cut(s)	419, 473, 759, 1007
AflIII	ACRYGT	1 cut(s)	1029
AgsI	TTSAA	2 cut(s)	190, 1076
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AloI	GAACNNNNNNTCC	2 cut(s)	639, 671
AluBI	AGCT	9 cut(s)	37, 154, 213, 289, 567, 780, 802, 852, 919
AluI	AGCT	9 cut(s)	37, 154, 213, 289, 567, 780, 802, 852, 919
Alw26I	GTCTC	2 cut(s)	119, 401
AlwI	GGATC	1 cut(s)	1164
AlwNI	CAGNNNCTG	1 cut(s)	1145
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	475, 708
ApeKI	GCWGC	4 cut(s)	722, 815, 916, 935
Asp718I	GGTACC	2 cut(s)	267, 297
AspLEI	GCGC	2 cut(s)	165, 171
AspS9I	GGNCC	2 cut(s)	4, 386
AsuC2I	CCSGG	2 cut(s)	88, 1002
AsuHPI	GGTGA	4 cut(s)	115, 478, 1103, 1109
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	4, 386
BanI	GGYRCC	2 cut(s)	267, 297
BanII	GRGCYC	2 cut(s)	88, 203
BbsI	GAAGAC	1 cut(s)	676
BbvI	GCAGC	4 cut(s)	734, 802, 928, 947
BccI	CCATC	4 cut(s)	99, 572, 892, 1088
BcnI	CCSGG	2 cut(s)	88, 1002
BcoDI	GTCTC	2 cut(s)	119, 401
BfaI	CTAG	2 cut(s)	9, 1198
BfmI	CTRYAG	1 cut(s)	688
BfoI	RGCGCY	2 cut(s)	166, 172
BisI	GCNGC	4 cut(s)	723, 816, 917, 936
BlsI	GCNGC	4 cut(s)	724, 817, 918, 937
Bme1390I	CCNGG	2 cut(s)	88, 1002
Bme18I	GGWCC	2 cut(s)	4, 386
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	4, 386
BmiI	GGNNCC	7 cut(s)	6, 179, 269, 299, 750, 1006, 1056
BmrFI	CCNGG	2 cut(s)	88, 1002
BpiI	GAAGAC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	874
BpuMI	CCSGG	2 cut(s)	88, 1002
Bsa29I	ATCGAT	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	623
BsaWI	WCCGGW	1 cut(s)	1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 473, 759, 1007
Bse1I	ACTGG	2 cut(s)	1139, 1177
Bse3DI	GCAATG	2 cut(s)	979, 1055
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	623
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	419, 473, 759, 1007
BseMI	GCAATG	2 cut(s)	979, 1055
BseMII	CTCAG	3 cut(s)	173, 440, 758
BseNI	ACTGG	2 cut(s)	1139, 1177
BseXI	GCAGC	4 cut(s)	734, 802, 928, 947
BsgI	GTGCAG	1 cut(s)	1054
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	2 cut(s)	46, 942
BshFI	GGCC	2 cut(s)	477, 710
BshNI	GGYRCC	2 cut(s)	267, 297
BshVI	ATCGAT	1 cut(s)	497
BsiEI	CGRYCG	2 cut(s)	46, 942
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	88, 1001, 1008
BslI	CCNNNNNNNGG	4 cut(s)	419, 473, 759, 1007
BsmAI	GTCTC	2 cut(s)	119, 401
BsmI	GAATGC	1 cut(s)	912
BsnI	GGCC	2 cut(s)	477, 710
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	88, 203
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	43, 360, 528, 939, 1156
BspACI	CCGC	2 cut(s)	68, 301
BspANI	GGCC	2 cut(s)	477, 710
BspCNI	CTCAG	3 cut(s)	172, 441, 759
BspDI	ATCGAT	1 cut(s)	497
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	993
BspLI	GGNNCC	7 cut(s)	6, 179, 269, 299, 750, 1006, 1056
BspPI	GGATC	1 cut(s)	1164
BspQI	GCTCTTC	1 cut(s)	821
BspT107I	GGYRCC	2 cut(s)	267, 297
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	979, 1055
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	1139, 1177
BssECI	CCNNGG	1 cut(s)	623
BssMI	GATC	5 cut(s)	43, 360, 528, 939, 1156
BssT1I	CCWWGG	1 cut(s)	623
Bst4CI	ACNGT	5 cut(s)	239, 511, 956, 1044, 1147
Bst6I	CTCTTC	4 cut(s)	188, 372, 619, 821
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	5 cut(s)	35, 72, 167, 291, 833
BstDEI	CTNAG	4 cut(s)	159, 449, 479, 767
BstENI	CCTNNNNNAGG	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	2 cut(s)	166, 172
BstHHI	GCGC	2 cut(s)	165, 171
BstKTI	GATC	5 cut(s)	46, 363, 531, 942, 1159
BstMAI	GTCTC	2 cut(s)	119, 401
BstMBI	GATC	5 cut(s)	43, 360, 528, 939, 1156
BstMCI	CGRYCG	2 cut(s)	46, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 841, 916
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	2 cut(s)	86, 1000
BstSFI	CTRYAG	1 cut(s)	688
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	734, 802, 928, 947
BstV2I	GAAGAC	1 cut(s)	676
BstXI	CCANNNNNNTGG	2 cut(s)	578, 968
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	477, 710
BsuTUI	ATCGAT	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	4 cut(s)	507, 706, 799, 1143
Cac8I	GCNNGC	5 cut(s)	35, 72, 167, 291, 833
CaiI	CAGNNNCTG	1 cut(s)	1145
CciI	TCATGA	1 cut(s)	993
CfoI	GCGC	2 cut(s)	165, 171
Cfr13I	GGNCC	2 cut(s)	4, 386
ClaI	ATCGAT	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	145, 268, 298
CspCI	CAANNNNNGTGG	2 cut(s)	765, 800
CviQI	GTAC	3 cut(s)	145, 268, 298
DdeI	CTNAG	4 cut(s)	159, 449, 479, 767
DpnI	GATC	5 cut(s)	45, 362, 530, 941, 1158
DpnII	GATC	5 cut(s)	43, 360, 528, 939, 1156
Eam1104I	CTCTTC	4 cut(s)	188, 372, 619, 821
EarI	CTCTTC	4 cut(s)	188, 372, 619, 821
Eco130I	CCWWGG	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	2 cut(s)	88, 203
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	4, 386
Eco57I	CTGAAG	2 cut(s)	333, 396
Eco88I	CYCGRG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	623
EcoT38I	GRGCYC	2 cut(s)	88, 203
ErhI	CCWWGG	1 cut(s)	623
FauNDI	CATATG	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	723, 816, 917, 936
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	2 cut(s)	88, 203
Fsp4HI	GCNGC	4 cut(s)	723, 816, 917, 936
FspBI	CTAG	2 cut(s)	9, 1198
GlaI	GCGC	2 cut(s)	164, 170
GluI	GCNGC	4 cut(s)	723, 816, 917, 936
GsuI	CTGGAG	1 cut(s)	537
HaeII	RGCGCY	2 cut(s)	166, 172
HaeIII	GGCC	2 cut(s)	477, 710
HapII	CCGG	3 cut(s)	88, 1001, 1008
HhaI	GCGC	2 cut(s)	165, 171
Hin6I	GCGC	2 cut(s)	163, 169
HinP1I	GCGC	2 cut(s)	163, 169
HincII	GTYRAC	2 cut(s)	1164, 1195
HindII	GTYRAC	2 cut(s)	1164, 1195
HindIII	AAGCTT	3 cut(s)	565, 778, 850
HinfI	GANTC	6 cut(s)	24, 606, 641, 672, 742, 997
HpaI	GTTAAC	1 cut(s)	1195
HpaII	CCGG	3 cut(s)	88, 1001, 1008
HphI	GGTGA	4 cut(s)	115, 478, 1103, 1109
Hpy166II	GTNNAC	4 cut(s)	23, 123, 1164, 1195
Hpy188I	TCNGA	4 cut(s)	376, 450, 562, 768
Hpy188III	TCNNGA	3 cut(s)	645, 994, 1154
Hpy8I	GTNNAC	4 cut(s)	23, 123, 1164, 1195
HpyAV	CCTTC	6 cut(s)	68, 85, 142, 257, 477, 753
HpyCH4III	ACNGT	5 cut(s)	239, 511, 956, 1044, 1147
HpyCH4V	TGCA	5 cut(s)	293, 871, 935, 1035, 1105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 841, 916
HpyF3I	CTNAG	4 cut(s)	159, 449, 479, 767
HspAI	GCGC	2 cut(s)	163, 169
KpnI	GGTACC	2 cut(s)	271, 301
KspAI	GTTAAC	1 cut(s)	1195
Kzo9I	GATC	5 cut(s)	43, 360, 528, 939, 1156
LguI	GCTCTTC	1 cut(s)	821
LmnI	GCTCC	2 cut(s)	754, 807
Lsp1109I	GCAGC	4 cut(s)	734, 802, 928, 947
MaeI	CTAG	2 cut(s)	9, 1198
MaeIII	GTNAC	5 cut(s)	242, 427, 484, 505, 1141
MalI	GATC	5 cut(s)	45, 362, 530, 941, 1158
MboI	GATC	5 cut(s)	43, 360, 528, 939, 1156
MfeI	CAATTG	2 cut(s)	414, 730
MhlI	GDGCHC	2 cut(s)	88, 203
MluCI	AATT	3 cut(s)	414, 434, 730
MlyI	GAGTC	3 cut(s)	18, 650, 666
MmeI	TCCRAC	2 cut(s)	432, 467
MseI	TTAA	1 cut(s)	1194
MslI	CAYNNNNRTG	2 cut(s)	576, 663
MspI	CCGG	3 cut(s)	88, 1001, 1008
MspR9I	CCNGG	2 cut(s)	88, 1002
MunI	CAATTG	2 cut(s)	414, 730
Mva1269I	GAATGC	1 cut(s)	912
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	3 cut(s)	160, 841, 916
NciI	CCSGG	2 cut(s)	88, 1002
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	5 cut(s)	43, 360, 528, 939, 1156
NlaIV	GGNNCC	7 cut(s)	6, 179, 269, 299, 750, 1006, 1056
NmuCI	GTSAC	4 cut(s)	427, 484, 505, 1141
NspI	RCATGY	1 cut(s)	1033
PaeR7I	CTCGAG	1 cut(s)	137
PagI	TCATGA	1 cut(s)	993
PceI	AGGCCT	1 cut(s)	477
PciI	ACATGT	1 cut(s)	1029
PciSI	GCTCTTC	1 cut(s)	821
PctI	GAATGC	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	606, 742, 997
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	724, 817, 918, 937
Ple19I	CGATCG	2 cut(s)	46, 942
PleI	GAGTC	3 cut(s)	18, 649, 666
PpsI	GAGTC	3 cut(s)	18, 649, 666
PscI	ACATGT	1 cut(s)	1029
PspN4I	GGNNCC	7 cut(s)	6, 179, 269, 299, 750, 1006, 1056
PspPI	GGNCC	2 cut(s)	4, 386
PspXI	VCTCGAGB	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	1145
PvuI	CGATCG	2 cut(s)	46, 942
RsaI	GTAC	3 cut(s)	146, 269, 299
RsaNI	GTAC	3 cut(s)	145, 268, 298
RseI	CAYNNNNRTG	2 cut(s)	576, 663
SapI	GCTCTTC	1 cut(s)	821
SaqAI	TTAA	1 cut(s)	1194
SatI	GCNGC	4 cut(s)	723, 816, 917, 936
Sau3AI	GATC	5 cut(s)	43, 360, 528, 939, 1156
Sau96I	GGNCC	2 cut(s)	4, 386
SchI	GAGTC	3 cut(s)	18, 650, 666
ScrFI	CCNGG	2 cut(s)	88, 1002
SduI	GDGCHC	2 cut(s)	88, 203
SfcI	CTRYAG	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	4, 386
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	576, 663
SmlI	CTYRAG	2 cut(s)	137, 853
SmoI	CTYRAG	2 cut(s)	137, 853
Sse9I	AATT	3 cut(s)	414, 434, 730
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	2 cut(s)	68, 301
SspMI	CTAG	2 cut(s)	9, 1198
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	86, 1000
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	5 cut(s)	239, 511, 956, 1044, 1147
TaqI	TCGA	5 cut(s)	42, 82, 138, 497, 942
TasI	AATT	3 cut(s)	414, 434, 730
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	3 cut(s)	606, 742, 997
Tru1I	TTAA	1 cut(s)	1194
Tru9I	TTAA	1 cut(s)	1194
TscAI	CASTG	4 cut(s)	514, 706, 799, 1150
TseFI	GTSAC	4 cut(s)	427, 484, 505, 1141
TseI	GCWGC	4 cut(s)	722, 815, 916, 935
Tsp45I	GTSAC	4 cut(s)	427, 484, 505, 1141
TspDTI	ATGAA	5 cut(s)	647, 653, 698, 973, 1134
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	4 cut(s)	514, 706, 799, 1150
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	4, 386
XagI	CCTNNNNNAGG	1 cut(s)	471
XceI	RCATGY	1 cut(s)	1033
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	2 cut(s)	9, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.