Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Forward (+)

11672766 .. 11675387

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGTCATCACCGGCGAGATTCCGGCGGAGATGTAGTTCACGTGATTCCCACAAACAATCCTCCGCCGGATAATTGGTTTCCGAATCTCGGCGATAGTGCTGTTTGGGCGACGGAAGATGATTACAATAGAGCTTGGGCTATGAATCCCGATAACACCTCCGGCGACAACAATGGTCCACCGAACAAGAAGACTCGAGGCTCTCCGTCGTCTTCATCAGCCACGACTACTTCTGCTGCGAGCAATCGTACTAAAGCGATTGGGAAAATGTTCTTCAAGACGAAGCTTTGTTGCAAGTTTCGTGCTGGGACTTGTCCGTATATAACGAATTGTAACTTTGCTCATACGGTGGAGGAGCTTCGTCGTCCACCGCCGAATTGGCAGGAGATTGTGGCGGCTCATGAGGAGGAGAGATCTGGTGGTATGGGAACTCCTACAGTTTCTGTGGTTGAGATTCCACGGGAGGAGTTTCAGATCCCGTCTTTGGTGTCATCGACGGCTGAGAGTGGGAGATCTTTTAAAGGAAGACATTGTAAGAAGTTTTATACTGAAGAAGGATGTCCTTATGGAGAAAGTTGTACGTTTCTGCATGATGAGGCTTCGAGGAATAGAGAGAGTGTTGCTATTAGCTTAGGACCTGGTGGTTATGGAAGTGGTGGTGGTGGTGGAAGTGGCGGTGGTTCTGTTGGTGGTGGTGGTAGTAGTAGCAATGTAGTAGTGCTTGGTGGTGGTGGTGGAAGTGGAAGTGGAAGTGGGATTCAGATTTTGAAGCCTTCAAATTGGAAGACAAGGATTTGCAACAAATGGGAGATTACTGGGTATTGTCCATTTGGTGCTAAGTGTCATTTTGCTCATGGAGCTGCAGAGTTACATAGATTTGGCGGAGGACTCGTGGAAGAAGAAGGCAAAGATGGAGTATCACCCAATCCGGACACAAAGCAAACAGTACAAAACCCCAAAGGACTATCAGACACAACAACACTTCTATCTCCAGGAGTACCTCATAATGCAGATGCCAGTTACCACACTGGAGTTGCATTGCAACGAGCGTCTAGTGCGGTTACACAAAAGCCTGGAATTAGAACTCATCAGAAGTGGAAAGGACCGGCGAAAATCAGTCGGATATACGGTGATTGGATCGACGATATTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

384

Amino Acids

40.71

Weight (kDa)

8.01

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH_4	PF18044	176 - 198	6.8e-08	CCCH-type zinc finger
zf-CCCH	PF00642	261 - 286	1.4e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	262 - 285	4.1e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	928
AciI	CCGC	7 cut(s)	27, 65, 371, 395, 675, 882, 1058
AclWI	GGATC	2 cut(s)	469, 1145
AcuI	CTGAAG	1 cut(s)	570
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	4 cut(s)	250, 580, 948, 999
AfiI	CCNNNNNNNGG	2 cut(s)	89, 484
AgsI	TTSAA	4 cut(s)	277, 769, 777, 1151
AjnI	CCWGG	3 cut(s)	637, 991, 1072
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	5 cut(s)	134, 286, 358, 630, 860
AluI	AGCT	5 cut(s)	134, 286, 358, 630, 860
AlwI	GGATC	2 cut(s)	469, 1145
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	928
ApeKI	GCWGC	2 cut(s)	236, 860
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	3 cut(s)	176, 635, 1103
AsuHPI	GGTGA	2 cut(s)	912, 1142
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	3 cut(s)	176, 635, 1103
BauI	CACGAG	1 cut(s)	890
BbrPI	CACGTG	1 cut(s)	43
BbsI	GAAGAC	4 cut(s)	197, 204, 532, 791
BbvI	GCAGC	2 cut(s)	223, 847
BccI	CCATC	1 cut(s)	905
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	3 cut(s)	639, 993, 1074
BfaI	CTAG	1 cut(s)	1053
BfmI	CTRYAG	2 cut(s)	435, 861
BglI	GCCNNNNNGGC	1 cut(s)	379
BglII	AGATCT	2 cut(s)	413, 512
BisI	GCNGC	3 cut(s)	237, 396, 861
BlsI	GCNGC	3 cut(s)	238, 397, 862
Bme1390I	CCNGG	3 cut(s)	639, 993, 1074
Bme18I	GGWCC	3 cut(s)	176, 635, 1103
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	176, 635, 1103
BmrFI	CCNGG	3 cut(s)	639, 993, 1074
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	1 cut(s)	1003
BmuI	ACTGGG	1 cut(s)	825
BpiI	GAAGAC	4 cut(s)	197, 204, 532, 791
BpmI	CTGGAG	2 cut(s)	975, 1050
Bpu10I	CCTNAGC	1 cut(s)	631
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	458
BsaWI	WCCGGW	1 cut(s)	928
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 876, 906
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 484
Bse118I	RCCGGY	2 cut(s)	12, 1105
Bse1I	ACTGG	3 cut(s)	820, 1017, 1033
Bse3DI	GCAATG	2 cut(s)	715, 1037
BseAI	TCCGGA	1 cut(s)	928
BseBI	CCWGG	3 cut(s)	639, 993, 1074
BseDI	CCNNGG	1 cut(s)	458
BseGI	GGATG	1 cut(s)	563
BseLI	CCNNNNNNNGG	2 cut(s)	89, 484
BseMI	GCAATG	2 cut(s)	715, 1037
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	3 cut(s)	820, 1017, 1033
BseRI	GAGGAG	4 cut(s)	368, 419, 422, 479
BseXI	GCAGC	2 cut(s)	223, 847
BseYI	CCCAGC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	6 cut(s)	13, 24, 68, 162, 929, 1106
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	89, 484
BsmFI	GGGAC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	195
Bsp13I	TCCGGA	1 cut(s)	928
Bsp143I	GATC	4 cut(s)	413, 474, 512, 1137
BspACI	CCGC	7 cut(s)	27, 65, 371, 395, 675, 882, 1058
BspCNI	CTCAG	1 cut(s)	493
BspEI	TCCGGA	1 cut(s)	928
BspHI	TCATGA	1 cut(s)	400
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	2 cut(s)	469, 1145
BsrDI	GCAATG	2 cut(s)	715, 1037
BsrFI	RCCGGY	2 cut(s)	12, 1105
BsrI	ACTGG	3 cut(s)	820, 1017, 1033
BssAI	RCCGGY	2 cut(s)	12, 1105
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	4 cut(s)	413, 474, 512, 1137
BssSI	CACGAG	1 cut(s)	890
Bst2BI	CACGAG	1 cut(s)	890
Bst2UI	CCWGG	3 cut(s)	639, 993, 1074
Bst4CI	ACNGT	4 cut(s)	349, 439, 946, 1130
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	3 cut(s)	501, 631, 837
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	1 cut(s)	563
BstKTI	GATC	4 cut(s)	416, 477, 515, 1140
BstMBI	GATC	4 cut(s)	413, 474, 512, 1137
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 379, 857, 1055
BstNI	CCWGG	3 cut(s)	639, 993, 1074
BstSCI	CCNGG	3 cut(s)	637, 991, 1072
BstSFI	CTRYAG	2 cut(s)	435, 861
BstV1I	GCAGC	2 cut(s)	223, 847
BstV2I	GAAGAC	4 cut(s)	197, 204, 532, 791
BstX2I	RGATCY	3 cut(s)	413, 474, 512
BstYI	RGATCY	3 cut(s)	413, 474, 512
BtgI	CCRYGG	1 cut(s)	458
BtsCI	GGATG	1 cut(s)	563
BtsIMutI	CAGTG	1 cut(s)	1026
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	400
Cfr10I	RCCGGY	2 cut(s)	12, 1105
Cfr13I	GGNCC	3 cut(s)	176, 635, 1103
CseI	GACGC	1 cut(s)	1038
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	4 cut(s)	249, 579, 947, 998
CviAII	CATG	3 cut(s)	401, 590, 854
CviQI	GTAC	4 cut(s)	249, 579, 947, 998
DdeI	CTNAG	3 cut(s)	501, 631, 837
DpnI	GATC	4 cut(s)	415, 476, 514, 1139
DpnII	GATC	4 cut(s)	413, 474, 512, 1137
DraI	TTTAAA	1 cut(s)	520
EciI	GGCGGA	3 cut(s)	42, 54, 897
Eco47I	GGWCC	3 cut(s)	176, 635, 1103
Eco57I	CTGAAG	1 cut(s)	570
Eco72I	CACGTG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	637, 991, 1072
FaeI	CATG	3 cut(s)	404, 593, 857
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	400, 589, 853
Fnu4HI	GCNGC	3 cut(s)	237, 396, 861
FokI	GGATG	1 cut(s)	570
Fsp4HI	GCNGC	3 cut(s)	237, 396, 861
FspBI	CTAG	1 cut(s)	1053
GluI	GCNGC	3 cut(s)	237, 396, 861
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	975, 1050
HapII	CCGG	6 cut(s)	13, 24, 68, 162, 929, 1106
HgaI	GACGC	1 cut(s)	1038
Hin1II	CATG	3 cut(s)	404, 593, 857
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	9 cut(s)	4, 20, 46, 85, 145, 193, 454, 757, 888
HpaII	CCGG	6 cut(s)	13, 24, 68, 162, 929, 1106
HphI	GGTGA	2 cut(s)	912, 1142
Hpy166II	GTNNAC	3 cut(s)	40, 179, 368
Hpy188I	TCNGA	6 cut(s)	84, 474, 762, 970, 1092, 1122
Hpy188III	TCNNGA	4 cut(s)	149, 277, 401, 929
Hpy8I	GTNNAC	3 cut(s)	40, 179, 368
Hpy99I	CGWCG	5 cut(s)	115, 211, 366, 499, 1145
HpyAV	CCTTC	3 cut(s)	548, 783, 896
HpyCH4III	ACNGT	4 cut(s)	349, 439, 946, 1130
HpyCH4IV	ACGT	2 cut(s)	42, 581
HpyCH4V	TGCA	7 cut(s)	294, 589, 798, 863, 1010, 1037, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 379, 857, 1055
HpyF3I	CTNAG	3 cut(s)	501, 631, 837
HpySE526I	ACGT	2 cut(s)	42, 581
Hsp92II	CATG	3 cut(s)	404, 593, 857
Kpn2I	TCCGGA	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	413, 474, 512, 1137
LmnI	GCTCC	2 cut(s)	355, 857
Lsp1109I	GCAGC	2 cut(s)	223, 847
LweI	GCATC	1 cut(s)	1003
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	1 cut(s)	1053
MaeII	ACGT	2 cut(s)	42, 581
MaeIII	GTNAC	4 cut(s)	332, 867, 1019, 1060
MalI	GATC	4 cut(s)	415, 476, 514, 1139
MboI	GATC	4 cut(s)	413, 474, 512, 1137
MboII	GAAGA	9 cut(s)	128, 202, 204, 265, 537, 563, 796, 908, 911
MflI	RGATCY	3 cut(s)	413, 474, 512
MluCI	AATT	5 cut(s)	73, 328, 376, 778, 1077
MlyI	GAGTC	3 cut(s)	13, 187, 882
MmeI	TCCRAC	1 cut(s)	1100
MroI	TCCGGA	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	1 cut(s)	519
MspI	CCGG	6 cut(s)	13, 24, 68, 162, 929, 1106
MspR9I	CCNGG	3 cut(s)	639, 993, 1074
MvaI	CCWGG	3 cut(s)	639, 993, 1074
MwoI	GCNNNNNNNGC	4 cut(s)	107, 379, 857, 1055
NdeII	GATC	4 cut(s)	413, 474, 512, 1137
NlaIII	CATG	3 cut(s)	404, 593, 857
NmeAIII	GCCGAG	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	6 cut(s)	20, 46, 85, 145, 454, 757
PfoI	TCCNGGA	1 cut(s)	991
PkrI	GCNGC	3 cut(s)	238, 397, 862
PleI	GAGTC	3 cut(s)	12, 187, 882
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
PpsI	GAGTC	3 cut(s)	12, 187, 882
Ppu21I	YACGTR	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	3 cut(s)	637, 991, 1072
PspCI	CACGTG	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	637, 991, 1072
PspPI	GGNCC	3 cut(s)	176, 635, 1103
PspPPI	RGGWCCY	1 cut(s)	635
PspXI	VCTCGAGB	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	413, 474, 512
RsaI	GTAC	4 cut(s)	250, 580, 948, 999
RsaNI	GTAC	4 cut(s)	249, 579, 947, 998
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	3 cut(s)	237, 396, 861
Sau3AI	GATC	4 cut(s)	413, 474, 512, 1137
Sau96I	GGNCC	3 cut(s)	176, 635, 1103
SchI	GAGTC	3 cut(s)	13, 187, 882
ScrFI	CCNGG	3 cut(s)	639, 993, 1074
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	2 cut(s)	435, 861
Sfr274I	CTCGAG	1 cut(s)	195
SgrAI	CRCCGGYG	1 cut(s)	12
SinI	GGWCC	3 cut(s)	176, 635, 1103
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	5 cut(s)	73, 328, 376, 778, 1077
SsiI	CCGC	7 cut(s)	27, 65, 371, 395, 675, 882, 1058
SspMI	CTAG	1 cut(s)	1053
StyD4I	CCNGG	3 cut(s)	637, 991, 1072
TaaI	ACNGT	4 cut(s)	349, 439, 946, 1130
TaiI	ACGT	2 cut(s)	45, 584
TaqI	TCGA	4 cut(s)	196, 494, 602, 1140
TasI	AATT	5 cut(s)	73, 328, 376, 778, 1077
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	6 cut(s)	20, 46, 85, 145, 454, 757
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	1033
TseI	GCWGC	2 cut(s)	236, 860
TspDTI	ATGAA	2 cut(s)	158, 204
TspGWI	ACGGA	3 cut(s)	128, 195, 306
TspRI	CASTG	1 cut(s)	1033
VpaK11BI	GGWCC	3 cut(s)	176, 635, 1103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XhoI	CTCGAG	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.