Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Reverse (-)

13773668 .. 13777894

Gene Structure 4227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGTTATGGTGGTAGAGAAACAAATGTAGTCCAAGTAATCACTGGGAATGGTGGTGGTGGTGATATGTGGTCTGGTGACCAAGCAGTTTGGGCTACTGAGGATGAGTATCAAGTTTGGAATAATGGTGATGCAATGGGGGATACCATGTCCAACTCGAATTATGATCAGAGGCAATCCCAGAGTCGCTCTGGCAGCGAACCTCCCAACAAGAAATCTAGGAACACCCCAGATGTGACGTCTTCTAACCGGTCGAAAGCCATTGGGAAGATGTTTTTCAAGACCAAGCTTTGTTGCAAGTTTCGAGCTGGGACGTGCCCATATGTCACCAACTGCAACTTTGCTCATAGCATTGAGGAGCTTCGGCGGCCTCCTCCTAATTGGCAAGAGATTGTGGCTGCTCATGAGGAAGAAAAGGCAGTGTCTTCAGAGCCCAGGGAAGAGTTTCAGATTCCAATTGTGACCACAGGGTATGGTGTGGAGACTCAGAGATCATATAAAGGGAGGCATTGTAAGAAGTTCTATACTGAGGAAGGGTGCCCTTATGGAGATAATTGCACTTTTCTTCATGATGAGAGTTCGAAGAATCGGGAGAGTGTGGCAATAAGTTTAGGTCCCGGAGGATATGGTGGTGCTGCCGCTGCCGCTGCTGCGGGTGGAGCAAATAATAAGCCATCAAATTGGAAAACAAGGATATGTAATAAGTGGGAATTGACAGGTTATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGTGTAGCGGATGCAAATTTGCTCTTATTTGGAAGCACTTGGCGTCATCTGTGGGTCATAAATTTTTGTGCCACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

279

Amino Acids

30.63

Weight (kDa)

7.52

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	93 - 117	4.7e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	169 - 191	3.9e-09	CCCH-type zinc finger
zf-CCCH	PF00642	228 - 253	3.9e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	229 - 252	3.9e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	537
AciI	CCGC	5 cut(s)	367, 639, 645, 653, 764
AcsI	RAATTY	2 cut(s)	772, 817
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	2 cut(s)	239, 799
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	315
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	3 cut(s)	289, 308, 361
AluI	AGCT	3 cut(s)	289, 308, 361
Alw26I	GTCTC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	6 cut(s)	195, 398, 635, 641, 647, 650
ApoI	RAATTY	2 cut(s)	772, 817
AsiGI	ACCGGT	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	618
AsuHPI	GGTGA	4 cut(s)	74, 89, 140, 319
AsuII	TTCGAA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	614
BaeGI	GKGCMC	2 cut(s)	320, 542
BanI	GGYRCC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	234, 417
BbvI	GCAGC	6 cut(s)	207, 385, 622, 628, 634, 637
BccI	CCATC	1 cut(s)	682
BciT130I	CCWGG	1 cut(s)	436
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	9 cut(s)	196, 368, 399, 636, 639, 642, 645, 648, 651
BlsI	GCNGC	9 cut(s)	197, 369, 400, 637, 640, 643, 646, 649, 652
Bme1390I	CCNGG	2 cut(s)	436, 618
Bme18I	GGWCC	1 cut(s)	614
BmgBI	CACGTC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	2 cut(s)	539, 616
BmrFI	CCNGG	2 cut(s)	436, 618
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	121, 757
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	234, 417
Bpu14I	TTCGAA	1 cut(s)	581
BpuMI	CCSGG	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	239, 799
BsaJI	CCNNGG	2 cut(s)	434, 435
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	434, 435
BseGI	GGATG	2 cut(s)	109, 772
BseJI	GATNNNNATC	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	3 cut(s)	90, 500, 519
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	363, 371
BseSI	GKGCMC	2 cut(s)	320, 542
BseXI	GCAGC	6 cut(s)	207, 385, 622, 628, 634, 637
BseYI	CCCAGC	1 cut(s)	308
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	537
BshTI	ACCGGT	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	250, 618
BslFI	GGGAC	2 cut(s)	325, 600
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	325, 600
BsnI	GGCC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	320, 435, 542
Bsp143I	GATC	2 cut(s)	166, 491
BspACI	CCGC	5 cut(s)	367, 639, 645, 653, 764
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	3 cut(s)	91, 499, 520
BspHI	TCATGA	2 cut(s)	403, 568
BspLI	GGNNCC	2 cut(s)	539, 616
BspT104I	TTCGAA	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	537
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	434, 435
BssMI	GATC	2 cut(s)	166, 491
BssNI	GRCGYC	2 cut(s)	239, 799
Bst2UI	CCWGG	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	2 cut(s)	239, 799
BstBI	TTCGAA	1 cut(s)	581
BstDEI	CTNAG	3 cut(s)	99, 486, 528
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	109, 772
BstKTI	GATC	2 cut(s)	169, 494
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	166, 491
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 195, 367, 641, 644, 647, 650, 659
BstNI	CCWGG	1 cut(s)	436
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	434, 616
BstSLI	GKGCMC	2 cut(s)	320, 542
BstV1I	GCAGC	6 cut(s)	207, 385, 622, 628, 634, 637
BstV2I	GAAGAC	2 cut(s)	234, 417
BstXI	CCANNNNNNTGG	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	109, 772
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	42, 426
CciI	TCATGA	2 cut(s)	403, 568
Cfr10I	RCCGGY	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	1 cut(s)	788
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	4 cut(s)	148, 404, 569, 755
CviJI	RGCY	9 cut(s)	95, 260, 289, 308, 361, 370, 398, 433, 673
CviKI_1	RGCY	9 cut(s)	95, 260, 289, 308, 361, 370, 398, 433, 673
DdeI	CTNAG	3 cut(s)	99, 486, 528
DpnI	GATC	2 cut(s)	168, 493
DpnII	GATC	2 cut(s)	166, 491
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	411
Eco91I	GGTNACC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	614
EcoO65I	GGTNACC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	4 cut(s)	151, 407, 572, 758
FaqI	GGGAC	2 cut(s)	325, 600
FatI	CATG	4 cut(s)	147, 403, 568, 754
FauI	CCCGC	1 cut(s)	646
FauNDI	CATATG	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	9 cut(s)	196, 368, 399, 636, 639, 642, 645, 648, 651
FokI	GGATG	2 cut(s)	116, 779
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	9 cut(s)	196, 368, 399, 636, 639, 642, 645, 648, 651
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	9 cut(s)	196, 368, 399, 636, 639, 642, 645, 648, 651
GsaI	CCCAGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	2 cut(s)	250, 618
HgaI	GACGC	1 cut(s)	788
Hin1I	GRCGYC	2 cut(s)	239, 799
Hin1II	CATG	4 cut(s)	151, 407, 572, 758
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	4 cut(s)	184, 451, 484, 586
HpaII	CCGG	2 cut(s)	250, 618
HphI	GGTGA	4 cut(s)	74, 89, 140, 319
Hpy188I	TCNGA	5 cut(s)	171, 430, 450, 489, 836
Hpy188III	TCNNGA	4 cut(s)	280, 404, 569, 590
HpyAV	CCTTC	1 cut(s)	527
HpyCH4IV	ACGT	2 cut(s)	239, 314
HpyCH4V	TGCA	5 cut(s)	134, 297, 336, 558, 770
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 195, 367, 641, 644, 647, 650, 659
HpyF3I	CTNAG	3 cut(s)	99, 486, 528
HpySE526I	ACGT	2 cut(s)	239, 314
Hsp92I	GRCGYC	2 cut(s)	239, 799
Hsp92II	CATG	4 cut(s)	151, 407, 572, 758
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	166, 491
LmnI	GCTCC	2 cut(s)	358, 659
Lsp1109I	GCAGC	6 cut(s)	207, 385, 622, 628, 634, 637
LweI	GCATC	2 cut(s)	121, 757
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	239, 314
MaeIII	GTNAC	4 cut(s)	77, 235, 325, 460
MalI	GATC	2 cut(s)	168, 493
MboI	GATC	2 cut(s)	166, 491
MboII	GAAGA	7 cut(s)	234, 280, 417, 422, 452, 557, 595
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	3 cut(s)	320, 435, 542
MluCI	AATT	8 cut(s)	160, 379, 456, 553, 679, 710, 772, 817
MlyI	GAGTC	2 cut(s)	193, 478
MmeI	TCCRAC	1 cut(s)	177
MroXI	GAANNNNTTC	1 cut(s)	444
MspA1I	CMGCKG	2 cut(s)	641, 647
MspI	CCGG	2 cut(s)	250, 618
MspR9I	CCNGG	2 cut(s)	436, 618
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	8 cut(s)	92, 195, 367, 641, 644, 647, 650, 659
NciI	CCSGG	1 cut(s)	618
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	166, 491
NlaIII	CATG	4 cut(s)	151, 407, 572, 758
NlaIV	GGNNCC	2 cut(s)	539, 616
NmuCI	GTSAC	4 cut(s)	77, 235, 325, 460
NspV	TTCGAA	1 cut(s)	581
PagI	TCATGA	2 cut(s)	403, 568
PasI	CCCWGGG	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	451, 586
PfoI	TCCNGGA	1 cut(s)	616
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	9 cut(s)	197, 369, 400, 637, 640, 643, 646, 649, 652
PleI	GAGTC	2 cut(s)	192, 478
PpsI	GAGTC	2 cut(s)	192, 478
PpuMI	RGGWCCY	1 cut(s)	614
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	434
PspEI	GGTNACC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	539, 616
PspPI	GGNCC	1 cut(s)	614
PspPPI	RGGWCCY	1 cut(s)	614
SatI	GCNGC	9 cut(s)	196, 368, 399, 636, 639, 642, 645, 648, 651
Sau3AI	GATC	2 cut(s)	166, 491
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	2 cut(s)	193, 478
ScrFI	CCNGG	2 cut(s)	436, 618
SduI	GDGCHC	3 cut(s)	320, 435, 542
SetI	ASST	8 cut(s)	205, 242, 291, 310, 317, 363, 616, 721
SfaNI	GCATC	2 cut(s)	121, 757
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	1 cut(s)	614
Sse9I	AATT	8 cut(s)	160, 379, 456, 553, 679, 710, 772, 817
SsiI	CCGC	5 cut(s)	367, 639, 645, 653, 764
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	434, 616
TaiI	ACGT	2 cut(s)	242, 317
TaqI	TCGA	4 cut(s)	158, 254, 304, 581
TasI	AATT	8 cut(s)	160, 379, 456, 553, 679, 710, 772, 817
TauI	GCSGC	3 cut(s)	370, 641, 647
TfiI	GAWTC	2 cut(s)	451, 586
TscAI	CASTG	2 cut(s)	49, 426
TseFI	GTSAC	4 cut(s)	77, 235, 325, 460
TseI	GCWGC	6 cut(s)	195, 398, 635, 641, 647, 650
Tsp45I	GTSAC	4 cut(s)	77, 235, 325, 460
TspDTI	ATGAA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	49, 426
VpaK11BI	GGWCC	1 cut(s)	614
XapI	RAATTY	2 cut(s)	772, 817
XcmI	CCANNNNNNNNNTGG	3 cut(s)	41, 188, 752
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	1 cut(s)	219
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.