Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Reverse (-)

22104106 .. 22107247

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAGTTATGGTAGAGAAACAAATGTAGTTCAAGTAATCACTGGGAATGGTGGTGGAGCTGATATGTGGTCTGGTGACCAAGCAGTTTGGGCTACTGAGGATGAGTATCAAGTTTGGAATAATGGTGATGCATTGGGGGATACAATGTCCAACTCGAATTATGATCAGAGGCAATCCCAAAGTCGCTCCGGAAGCGAACCTCCCAACAAGAAATCTAGGAACACCCAAGATGTGACTTCTTCTAACCGGTCGAAAGCCATTGGGAAGATGTTTTTCAAGACCAAGCTTTGTTGCAAGTTTCGAGCTGGAACGTGCCCGTATGTCACTAATTGCAACTTTGCGCATAGCATTGAAGAGCTTCGGCGGCCACCTCCTAATTGGCAAGAGATTGTGGCTGCTCATGAGGAAGAAAAGGCGGTGTCTTCGGAGCCCAGGGAAGAGTTTCAGATTCCGATTGTGACCACAGGTTATGGTGTGGAGACTCAGAGGTCATATAAAGGGAGGCATTGCAAGAAGTTCTATACTGAGGAAGGGTGCCCTTATGGAGATAATTGCACTTTTCTTCATGATGAGAGTTCGAAGAATCGGGAGAGTGTGGCAATAAGTTTAGGTCCCGGAGGGTATGGTGGTGCTGCAGCTGCTGCTGCTGCTGCGGGTGGAGCAAATAACAAGCCATCAAATTGGAAAACAAGGATTTGCAATAAGTGGGAATTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGTGTTGCAGAATTACACCGATATGGAGGTGGGCTTGTGGACGGAGAAATTAGAGATTCTTCAGTCCCTCTTGACAATAAGCAGGGAGGAGTGCCTTCGAAAACTCCAGCTGATAATGTGGTAGTATCAGTCCCTATAGTTCCTCATTCTGATTTATATCATGGAGTTTCATCACAAAGATCATCGATAGTAAGTCAGAGGCCAGGGCAGAGAGCCCATCAGAAATGGAAGGGGCCAGACAAAATCAGTAGGATATATGGTGACTGGATAGATGATATCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

346

Amino Acids

37.96

Weight (kDa)

7.12

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	92 - 116	6.3e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	168 - 190	5.1e-09	CCCH-type zinc finger
zf-CCCH	PF00642	228 - 253	5.2e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L	PF25585	229 - 252	4.4e-06	DUS3L CCCH zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc16I	TGCGCA	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	534
AccIII	TCCGGA	1 cut(s)	188
AciI	CCGC	3 cut(s)	364, 416, 653
AcoI	YGGCCR	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	801
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	32, 277, 353
AjnI	CCWGG	2 cut(s)	431, 958
AluBI	AGCT	6 cut(s)	59, 286, 305, 358, 638, 866
AluI	AGCT	6 cut(s)	59, 286, 305, 358, 638, 866
Alw26I	GTCTC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	3 cut(s)	365, 956, 989
ApeKI	GCWGC	8 cut(s)	395, 632, 635, 638, 641, 644, 647, 650
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	2 cut(s)	357, 441
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	611, 989
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	86, 137, 1028
AsuII	TTCGAA	2 cut(s)	578, 854
AvaII	GGWCC	1 cut(s)	611
BaeGI	GKGCMC	2 cut(s)	317, 539
BanI	GGYRCC	1 cut(s)	534
BanII	GRGCYC	2 cut(s)	432, 973
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	8 cut(s)	382, 619, 625, 628, 631, 634, 637, 647
BccI	CCATC	2 cut(s)	682, 981
BciT130I	CCWGG	2 cut(s)	433, 960
BciVI	GTATCC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	633, 891
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	9 cut(s)	365, 396, 633, 636, 639, 642, 645, 648, 651
BlsI	GCNGC	9 cut(s)	366, 397, 634, 637, 640, 643, 646, 649, 652
Bme1390I	CCNGG	3 cut(s)	433, 615, 960
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	611, 989
BmiI	GGNNCC	4 cut(s)	429, 536, 613, 990
BmrFI	CCNGG	3 cut(s)	433, 615, 960
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	846
Bpu14I	TTCGAA	2 cut(s)	578, 854
BpuMI	CCSGG	1 cut(s)	615
Bsa29I	ATCGAT	1 cut(s)	941
BsaBI	GATNNNNATC	2 cut(s)	105, 912
BsaJI	CCNNGG	3 cut(s)	431, 432, 959
BsaWI	WCCGGW	2 cut(s)	188, 246
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	46, 1025
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	2 cut(s)	105, 912
BseAI	TCCGGA	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	433, 960
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	3 cut(s)	431, 432, 959
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	2 cut(s)	105, 912
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	87, 497, 516
BseNI	ACTGG	2 cut(s)	46, 1025
BseRI	GAGGAG	1 cut(s)	858
BseSI	GKGCMC	2 cut(s)	317, 539
BseXI	GCAGC	8 cut(s)	382, 619, 625, 628, 631, 634, 637, 647
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	367, 958, 991
BshNI	GGYRCC	1 cut(s)	534
BshTI	ACCGGT	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	941
BsiEI	CGRYCG	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	189, 247, 615
BslFI	GGGAC	3 cut(s)	597, 806, 872
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	3 cut(s)	597, 806, 872
BsnI	GGCC	3 cut(s)	367, 958, 991
Bsp119I	TTCGAA	2 cut(s)	578, 854
Bsp1286I	GDGCHC	4 cut(s)	317, 432, 539, 973
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	163, 935
BspACI	CCGC	3 cut(s)	364, 416, 653
BspANI	GGCC	3 cut(s)	367, 958, 991
BspCNI	CTCAG	3 cut(s)	88, 496, 517
BspDI	ATCGAT	1 cut(s)	941
BspEI	TCCGGA	1 cut(s)	188
BspHI	TCATGA	2 cut(s)	400, 565
BspLI	GGNNCC	4 cut(s)	429, 536, 613, 990
BspMAI	CTGCAG	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	348
BspT104I	TTCGAA	2 cut(s)	578, 854
BspT107I	GGYRCC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	46, 1025
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	431, 432, 959
BssMI	GATC	2 cut(s)	163, 935
Bst2UI	CCWGG	2 cut(s)	433, 960
Bst6I	CTCTTC	2 cut(s)	348, 432
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	2 cut(s)	578, 854
BstDEI	CTNAG	3 cut(s)	96, 483, 525
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	166, 938
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	163, 935
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	9 cut(s)	89, 192, 364, 638, 641, 644, 647, 650, 659
BstNI	CCWGG	2 cut(s)	433, 960
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	431, 613, 958
BstSFI	CTRYAG	2 cut(s)	633, 891
BstSLI	GKGCMC	2 cut(s)	317, 539
BstV1I	GCAGC	8 cut(s)	382, 619, 625, 628, 631, 634, 637, 647
BstV2I	GAAGAC	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	681
Bsu15I	ATCGAT	1 cut(s)	941
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	367, 958, 991
BsuTUI	ATCGAT	1 cut(s)	941
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	2 cut(s)	400, 565
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	611, 989
ClaI	ATCGAT	1 cut(s)	941
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	4 cut(s)	401, 566, 755, 917
DdeI	CTNAG	3 cut(s)	96, 483, 525
DpnI	GATC	2 cut(s)	165, 937
DpnII	GATC	2 cut(s)	163, 935
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	348, 432
EarI	CTCTTC	2 cut(s)	348, 432
Eco24I	GRGCYC	2 cut(s)	432, 973
Eco32I	GATATC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	431, 958
EcoRV	GATATC	1 cut(s)	1033
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	432, 973
FaeI	CATG	4 cut(s)	404, 569, 758, 920
FaqI	GGGAC	3 cut(s)	597, 806, 872
FatI	CATG	4 cut(s)	400, 565, 754, 916
FauI	CCCGC	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	9 cut(s)	365, 396, 633, 636, 639, 642, 645, 648, 651
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	432, 973
Fsp4HI	GCNGC	9 cut(s)	365, 396, 633, 636, 639, 642, 645, 648, 651
FspBI	CTAG	1 cut(s)	216
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	9 cut(s)	365, 396, 633, 636, 639, 642, 645, 648, 651
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	3 cut(s)	367, 958, 991
HapII	CCGG	3 cut(s)	189, 247, 615
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	4 cut(s)	404, 569, 758, 920
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	448, 481, 583, 812
HpaII	CCGG	3 cut(s)	189, 247, 615
HphI	GGTGA	3 cut(s)	86, 137, 1028
Hpy166II	GTNNAC	1 cut(s)	796
Hpy188I	TCNGA	8 cut(s)	168, 427, 447, 453, 486, 907, 954, 978
Hpy188III	TCNNGA	6 cut(s)	189, 277, 401, 566, 587, 827
Hpy8I	GTNNAC	1 cut(s)	796
HpyAV	CCTTC	3 cut(s)	524, 861, 979
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	8 cut(s)	131, 294, 333, 510, 555, 635, 699, 764
HpyF10VI	GCNNNNNNNGC	9 cut(s)	89, 192, 364, 638, 641, 644, 647, 650, 659
HpyF3I	CTNAG	3 cut(s)	96, 483, 525
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	404, 569, 758, 920
HspAI	GCGC	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 935
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	4 cut(s)	56, 191, 427, 659
Lsp1109I	GCAGC	8 cut(s)	382, 619, 625, 628, 631, 634, 637, 647
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	5 cut(s)	74, 232, 322, 457, 1016
MalI	GATC	2 cut(s)	165, 937
MboI	GATC	2 cut(s)	163, 935
MboII	GAAGA	9 cut(s)	231, 277, 365, 414, 419, 449, 554, 592, 807
MhlI	GDGCHC	4 cut(s)	317, 432, 539, 973
MluCI	AATT	8 cut(s)	157, 328, 376, 550, 679, 710, 767, 804
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	188
MroXI	GAANNNNTTC	2 cut(s)	357, 441
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	2 cut(s)	638, 866
MspI	CCGG	3 cut(s)	189, 247, 615
MspR9I	CCNGG	3 cut(s)	433, 615, 960
MvaI	CCWGG	2 cut(s)	433, 960
MwoI	GCNNNNNNNGC	9 cut(s)	89, 192, 364, 638, 641, 644, 647, 650, 659
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	2 cut(s)	163, 935
NlaIII	CATG	4 cut(s)	404, 569, 758, 920
NlaIV	GGNNCC	4 cut(s)	429, 536, 613, 990
NmuCI	GTSAC	5 cut(s)	74, 232, 322, 457, 1016
NsbI	TGCGCA	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	133
NspV	TTCGAA	2 cut(s)	578, 854
PagI	TCATGA	2 cut(s)	400, 565
PasI	CCCWGGG	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	348
PdmI	GAANNNNTTC	2 cut(s)	357, 441
PfeI	GAWTC	3 cut(s)	448, 583, 812
PfoI	TCCNGGA	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	9 cut(s)	366, 397, 634, 637, 640, 643, 646, 649, 652
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	431, 958
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	431, 958
PspN4I	GGNNCC	4 cut(s)	429, 536, 613, 990
PspPI	GGNCC	2 cut(s)	611, 989
PspPPI	RGGWCCY	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	641
PvuII	CAGCTG	2 cut(s)	638, 866
RseI	CAYNNNNRTG	1 cut(s)	777
SapI	GCTCTTC	1 cut(s)	348
SatI	GCNGC	9 cut(s)	365, 396, 633, 636, 639, 642, 645, 648, 651
Sau3AI	GATC	2 cut(s)	163, 935
Sau96I	GGNCC	2 cut(s)	611, 989
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	433, 615, 960
SduI	GDGCHC	4 cut(s)	317, 432, 539, 973
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	2 cut(s)	633, 891
SfuI	TTCGAA	2 cut(s)	578, 854
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	777
Sse9I	AATT	8 cut(s)	157, 328, 376, 550, 679, 710, 767, 804
SsiI	CCGC	3 cut(s)	364, 416, 653
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	431, 613, 958
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	7 cut(s)	155, 251, 301, 578, 854, 941, 1035
TasI	AATT	8 cut(s)	157, 328, 376, 550, 679, 710, 767, 804
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	3 cut(s)	448, 583, 812
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	5 cut(s)	74, 232, 322, 457, 1016
TseI	GCWGC	8 cut(s)	395, 632, 635, 638, 641, 644, 647, 650
Tsp45I	GTSAC	5 cut(s)	74, 232, 322, 457, 1016
TspDTI	ATGAA	2 cut(s)	554, 915
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	2 cut(s)	375, 752
XmnI	GAANNNNTTC	2 cut(s)	357, 441
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.