Rh7DG259700

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
27311068 .. 27315294
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG259700.1

Sequence Viewer

Length: 1038 bp
ATGAGTTATGCTAGAGAAACAAATGTAGTTCAAGTAATCACTGGGAATGGTGGTGGAGCCGATTTGTGGTCTGGTGACCAAGCAGTTTGGGCTACTGAGGATGAGTATCAAGTTTGGAATAATGGTGATGCATTGGGGGATTCCATGTCCAACTCGAATTATGATCAGAGGCAATCCCAAAGTCGCTCCGGAAGCGAACCTCCCAACAAGAAATCTAGGAACACCCAAGATGTGACTTCCTCTAACCGGTCAAAAGCCATTGGGAAGATGTTTTTCAAGACCAAGCTTTGTTGCAAGTTTCGAGCTGGGACGTGCCCGTATGTCACTAATTGCAACTTTGCGCATAGCATTGAAGAGCTTCGGCGGCCGCCTCCTAATTGGCAAGAGATTGTGGCTGCTCATGAGGAAGAAAAGGCGGTGTCTTCGGAGCCCAGGGAAGAGTTTCAGATTCCGATTGTGACCACAGGTTATGGTGTGGAGACTCAGAGGTCATATAAAGGGAGGCATTGCAAGAAGTTCTATACTGAGGAAGGTTGCCCTTATGGAGATAATTGCACTTTTCTTCATGATGAGAGTTCGAAGAATCGGGAGAGTGTGGCAATAAGTTTAGGTCCCGGAGGGTATGGTGGTGCTGCAGCTGCTGCTGCTGCGGGTGGAGCAAATAACAAGCCATCAAATTGGAAAACAAGGATTTGCAATAAGTGGGAATTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGTGTTGCAGAATTACACCGATATGGAGGTGGGCTTGTGGACGGAGAAATTAGAGATTCTTCAGTCCCTCTTGACAATAAGCAGGGAGGAATGCCTTCGAAAACTCCAGCTGATACTGTGGTAGTATCAGTCCCTGTAGTTCCTCATTCTGATTTATATCATGGAGTTCCATCACAAAGATCATCGATAGTAAGTCAGAGGCCAGGGCAGAGAGCCCATCAGAAATGGAAGGGGCCAGACAAAATCAGTAGGATATATGGTGACTGGATAGATGATATCGAATAA

Protein Analysis

345

Amino Acids

37.89

Weight (kDa)

7.12

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 92 - 116 6.3e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 168 - 190 5.1e-09 CCCH-type zinc finger
zf-CCCH PF00642 227 - 252 5.2e-11 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_DUS3L PF25585 228 - 251 4.4e-06 DUS3L CCCH zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013326)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 487
Acc16I TGCGCA 1 cut(s) 342
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 4 cut(s) 364, 368, 416, 650
AcoI YGGCCR 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 798
AfiI CCNNNNNNNGG 2 cut(s) 66, 246
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 32, 277, 353
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 2 cut(s) 431, 955
AluBI AGCT 5 cut(s) 286, 305, 358, 638, 863
AluI AGCT 5 cut(s) 286, 305, 358, 638, 863
Alw26I GTCTC 1 cut(s) 473
AlwNI CAGNNNCTG 2 cut(s) 641, 887
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 3 cut(s) 365, 953, 986
ApeKI GCWGC 7 cut(s) 395, 632, 635, 638, 641, 644, 647
AsiGI ACCGGT 1 cut(s) 246
Asp700I GAANNNNTTC 3 cut(s) 357, 441, 847
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 611, 986
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 3 cut(s) 86, 137, 1025
AsuII TTCGAA 2 cut(s) 578, 851
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 1 cut(s) 317
BaeI ACNNNNGTAYC 2 cut(s) 858, 891
BanII GRGCYC 2 cut(s) 432, 970
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 7 cut(s) 382, 619, 625, 628, 631, 634, 647
BccI CCATC 3 cut(s) 679, 931, 978
BciT130I CCWGG 2 cut(s) 433, 957
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 615
BcoDI GTCTC 1 cut(s) 473
BfaI CTAG 2 cut(s) 12, 216
BfmI CTRYAG 2 cut(s) 633, 888
BisI GCNGC 9 cut(s) 365, 368, 396, 633, 636, 639, 642, 645, 648
BlsI GCNGC 9 cut(s) 366, 369, 397, 634, 637, 640, 643, 646, 649
Bme1390I CCNGG 3 cut(s) 433, 615, 957
Bme18I GGWCC 1 cut(s) 611
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 2 cut(s) 611, 986
BmiI GGNNCC 4 cut(s) 58, 429, 613, 987
BmrFI CCNGG 3 cut(s) 433, 615, 957
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 843
Bpu14I TTCGAA 2 cut(s) 578, 851
BpuMI CCSGG 1 cut(s) 615
Bsa29I ATCGAT 1 cut(s) 938
BsaBI GATNNNNATC 2 cut(s) 105, 909
BsaJI CCNNGG 3 cut(s) 431, 432, 956
BsaWI WCCGGW 2 cut(s) 188, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 246
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 46, 1022
Bse3DI GCAATG 1 cut(s) 505
Bse8I GATNNNNATC 2 cut(s) 105, 909
BseAI TCCGGA 1 cut(s) 188
BseBI CCWGG 2 cut(s) 433, 957
BseCI ATCGAT 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 431, 432, 956
BseGI GGATG 1 cut(s) 106
BseJI GATNNNNATC 2 cut(s) 105, 909
BseLI CCNNNNNNNGG 2 cut(s) 66, 246
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 3 cut(s) 87, 497, 516
BseNI ACTGG 2 cut(s) 46, 1022
BseSI GKGCMC 1 cut(s) 317
BseX3I CGGCCG 1 cut(s) 365
BseXI GCAGC 7 cut(s) 382, 619, 625, 628, 631, 634, 647
BseYI CCCAGC 1 cut(s) 305
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 3 cut(s) 367, 955, 988
BshTI ACCGGT 1 cut(s) 246
BshVI ATCGAT 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 368
BsiSI CCGG 3 cut(s) 189, 247, 615
BslFI GGGAC 4 cut(s) 322, 597, 803, 869
BslI CCNNNNNNNGG 2 cut(s) 66, 246
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 4 cut(s) 322, 597, 803, 869
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 3 cut(s) 367, 955, 988
Bsp119I TTCGAA 2 cut(s) 578, 851
Bsp1286I GDGCHC 3 cut(s) 317, 432, 970
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 163, 932
BspACI CCGC 4 cut(s) 364, 368, 416, 650
BspANI GGCC 3 cut(s) 367, 955, 988
BspCNI CTCAG 3 cut(s) 88, 496, 517
BspDI ATCGAT 1 cut(s) 938
BspEI TCCGGA 1 cut(s) 188
BspHI TCATGA 2 cut(s) 400, 565
BspLI GGNNCC 4 cut(s) 58, 429, 613, 987
BspMAI CTGCAG 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 348
BspT104I TTCGAA 2 cut(s) 578, 851
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 2 cut(s) 46, 1022
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 3 cut(s) 431, 432, 956
BssMI GATC 2 cut(s) 163, 932
Bst2UI CCWGG 2 cut(s) 433, 957
Bst4CI ACNGT 1 cut(s) 871
Bst6I CTCTTC 2 cut(s) 348, 432
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBI TTCGAA 2 cut(s) 578, 851
BstDEI CTNAG 3 cut(s) 96, 483, 525
BstEII GGTNACC 1 cut(s) 74
BstF5I GGATG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 2 cut(s) 166, 935
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 2 cut(s) 163, 932
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 8 cut(s) 89, 192, 364, 638, 641, 644, 647, 656
BstNI CCWGG 2 cut(s) 433, 957
BstPI GGTNACC 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 431, 613, 955
BstSFI CTRYAG 2 cut(s) 633, 888
BstSLI GKGCMC 1 cut(s) 317
BstV1I GCAGC 7 cut(s) 382, 619, 625, 628, 631, 634, 647
BstV2I GAAGAC 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 678
BstZI CGGCCG 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 938
BsuRI GGCC 3 cut(s) 367, 955, 988
BsuTUI ATCGAT 1 cut(s) 938
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 39
CaiI CAGNNNCTG 2 cut(s) 641, 887
CciI TCATGA 2 cut(s) 400, 565
CciNI GCGGCCGC 1 cut(s) 365
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 611, 986
ClaI ATCGAT 1 cut(s) 938
CspAI ACCGGT 1 cut(s) 246
CviAII CATG 5 cut(s) 145, 401, 566, 752, 914
DdeI CTNAG 3 cut(s) 96, 483, 525
DpnI GATC 2 cut(s) 165, 934
DpnII GATC 2 cut(s) 163, 932
DrdI GACNNNNNNGTC 1 cut(s) 487
DseDI GACNNNNNNGTC 1 cut(s) 487
EaeI YGGCCR 1 cut(s) 365
EagI CGGCCG 1 cut(s) 365
Eam1104I CTCTTC 2 cut(s) 348, 432
EarI CTCTTC 2 cut(s) 348, 432
EclXI CGGCCG 1 cut(s) 365
Eco24I GRGCYC 2 cut(s) 432, 970
Eco32I GATATC 1 cut(s) 1030
Eco47I GGWCC 1 cut(s) 611
Eco52I CGGCCG 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 798
Eco91I GGTNACC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 431, 955
EcoRV GATATC 1 cut(s) 1030
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 2 cut(s) 432, 970
FaeI CATG 5 cut(s) 148, 404, 569, 755, 917
FaqI GGGAC 4 cut(s) 322, 597, 803, 869
FatI CATG 5 cut(s) 144, 400, 565, 751, 913
FauI CCCGC 1 cut(s) 643
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 9 cut(s) 365, 368, 396, 633, 636, 639, 642, 645, 648
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 2 cut(s) 432, 970
Fsp4HI GCNGC 9 cut(s) 365, 368, 396, 633, 636, 639, 642, 645, 648
FspBI CTAG 2 cut(s) 12, 216
FspI TGCGCA 1 cut(s) 342
GlaI GCGC 1 cut(s) 342
GluI GCNGC 9 cut(s) 365, 368, 396, 633, 636, 639, 642, 645, 648
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 3 cut(s) 367, 955, 988
HapII CCGG 3 cut(s) 189, 247, 615
HhaI GCGC 1 cut(s) 343
Hin1II CATG 5 cut(s) 148, 404, 569, 755, 917
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 5 cut(s) 140, 448, 481, 583, 809
HpaII CCGG 3 cut(s) 189, 247, 615
HphI GGTGA 3 cut(s) 86, 137, 1025
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 8 cut(s) 168, 427, 447, 453, 486, 904, 951, 975
Hpy188III TCNNGA 6 cut(s) 189, 277, 401, 566, 587, 824
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 3 cut(s) 524, 858, 976
HpyCH4III ACNGT 1 cut(s) 871
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 8 cut(s) 131, 294, 333, 510, 555, 635, 696, 761
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 192, 364, 638, 641, 644, 647, 656
HpyF3I CTNAG 3 cut(s) 96, 483, 525
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 5 cut(s) 148, 404, 569, 755, 917
HspAI GCGC 1 cut(s) 341
Kpn2I TCCGGA 1 cut(s) 188
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 163, 932
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 4 cut(s) 56, 191, 427, 656
Lsp1109I GCAGC 7 cut(s) 382, 619, 625, 628, 631, 634, 647
LweI GCATC 1 cut(s) 118
MaeI CTAG 2 cut(s) 12, 216
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 5 cut(s) 74, 232, 322, 457, 1013
MalI GATC 2 cut(s) 165, 934
MboI GATC 2 cut(s) 163, 932
MboII GAAGA 8 cut(s) 277, 365, 414, 419, 449, 554, 592, 804
MhlI GDGCHC 3 cut(s) 317, 432, 970
MluCI AATT 8 cut(s) 157, 328, 376, 550, 676, 707, 764, 801
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 133
MroI TCCGGA 1 cut(s) 188
MroXI GAANNNNTTC 3 cut(s) 357, 441, 847
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 638, 863
MspI CCGG 3 cut(s) 189, 247, 615
MspR9I CCNGG 3 cut(s) 433, 615, 957
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 2 cut(s) 433, 957
MwoI GCNNNNNNNGC 8 cut(s) 89, 192, 364, 638, 641, 644, 647, 656
NciI CCSGG 1 cut(s) 615
NdeII GATC 2 cut(s) 163, 932
NlaIII CATG 5 cut(s) 148, 404, 569, 755, 917
NlaIV GGNNCC 4 cut(s) 58, 429, 613, 987
NmuCI GTSAC 5 cut(s) 74, 232, 322, 457, 1013
NotI GCGGCCGC 1 cut(s) 365
NsbI TGCGCA 1 cut(s) 342
NsiI ATGCAT 1 cut(s) 133
NspV TTCGAA 2 cut(s) 578, 851
PagI TCATGA 2 cut(s) 400, 565
PasI CCCWGGG 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 348
PctI GAATGC 1 cut(s) 849
PdmI GAANNNNTTC 3 cut(s) 357, 441, 847
PfeI GAWTC 4 cut(s) 140, 448, 583, 809
PfoI TCCNGGA 1 cut(s) 613
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 9 cut(s) 366, 369, 397, 634, 637, 640, 643, 646, 649
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 431, 955
PspEI GGTNACC 1 cut(s) 74
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 2 cut(s) 431, 955
PspN4I GGNNCC 4 cut(s) 58, 429, 613, 987
PspPI GGNCC 2 cut(s) 611, 986
PspPPI RGGWCCY 1 cut(s) 611
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 2 cut(s) 641, 887
PvuII CAGCTG 2 cut(s) 638, 863
RseI CAYNNNNRTG 1 cut(s) 774
SapI GCTCTTC 1 cut(s) 348
SatI GCNGC 9 cut(s) 365, 368, 396, 633, 636, 639, 642, 645, 648
Sau3AI GATC 2 cut(s) 163, 932
Sau96I GGNCC 2 cut(s) 611, 986
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 3 cut(s) 433, 615, 957
SduI GDGCHC 3 cut(s) 317, 432, 970
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 2 cut(s) 633, 888
SfuI TTCGAA 2 cut(s) 578, 851
SinI GGWCC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 774
Sse9I AATT 8 cut(s) 157, 328, 376, 550, 676, 707, 764, 801
SsiI CCGC 4 cut(s) 364, 368, 416, 650
SspMI CTAG 2 cut(s) 12, 216
StyD4I CCNGG 3 cut(s) 431, 613, 955
TaaI ACNGT 1 cut(s) 871
TaiI ACGT 1 cut(s) 314
TaqI TCGA 6 cut(s) 155, 301, 578, 851, 938, 1032
TasI AATT 8 cut(s) 157, 328, 376, 550, 676, 707, 764, 801
TauI GCSGC 2 cut(s) 367, 370
TfiI GAWTC 4 cut(s) 140, 448, 583, 809
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 5 cut(s) 74, 232, 322, 457, 1013
TseI GCWGC 7 cut(s) 395, 632, 635, 638, 641, 644, 647
Tsp45I GTSAC 5 cut(s) 74, 232, 322, 457, 1013
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XmnI GAANNNNTTC 3 cut(s) 357, 441, 847
XspI CTAG 2 cut(s) 12, 216
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.