Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Reverse (-)

4663160 .. 4667876

Gene Structure 4717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1036400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATTATGGTAGAGAGAGCAATGCGGTCCAGGTAATCACTGGGAATAGTGGTGGTGATATTTGGTCTGGTGACCAAGCGGTTTGGGCTACTGAGGATGAGTACCGAGTTTGGAATAATGGTGACGCGATGGCGGACACCATGTCCAACTCAAGTTATGATCAAAGGCAATCGCAAAGTCACTCTGGAAGCGAACCTCCAAATAAGAAATCAAGGAACTCCCAAGATGCAACTTCATCTAACCGGTCGAAAGCCATTGGGAAAATGTTCTTCAAAACCAAACTTTGTTGCAAATTCCGTGCTGGGACGTGCCCCTATGTCACCAATTGTAACTTTGCTCATAGCATTGAGGAGCTTCGGAGACCGCCACCAAATTGGCAAGATATTGTGGCTGCCCATGAGGAAGAAAAGGCTGTATCTTCAGAGCCAAGGGAAGAGTATCAAATTCCAATCGTCTCTACAGGTTATGGTGTGGAGACTCCAAGATCCTATAAAGGGAGGCATTGCAAAAAGTTTTATACTGAGGAAGGGTGTCCTTATGGGGATAATTGCACTTTTCTACATGATGAGCAGTCCAAGAATAGAGAGAGTGTGGCAATAAGTTTAGGTCCTGGAGGGTATGGTGGTGGTGCTGCTGCTGCGAATGGAGCAAGTAACAAGCCATCAAACTGGAAAACAAGGGTTTGCAATAAGTGGGAATTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGTGTAGCAGAATTACACCGGTATGGTGGTGGGCTTGTGGAGGGAGAAACTAGAGATTCTTCTTCAGTTGCTCCTGACAATAAGCAGGGAGCAATGCTTTCGAAAACTCCAGGAGATGCTGTGGTAGTATCAGTTCCTCTAGTTTCTCATTCTGATGTTTATCACCTTGGAGTCCCGTCACAAAGATCATCCATTGTAATTCAGAGATCAGGGCCGCGAGCCCATCAGAAATGGAAGGGACCAGACAAAATCAGTAGGATATATGGTGACTGGATTGATGACATCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

345

Amino Acids

37.78

Weight (kDa)

6.83

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	91 - 115	6.2e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	167 - 189	5.1e-09	CCCH-type zinc finger
zf-CCCH	PF00642	224 - 249	6e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	128, 961
AciI	CCGC	5 cut(s)	26, 80, 134, 365, 959
AclWI	GGATC	1 cut(s)	480
AcsI	RAATTY	2 cut(s)	293, 444
AcuI	CTGAAG	2 cut(s)	405, 792
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgeI	ACCGGT	2 cut(s)	243, 762
AgsI	TTSAA	1 cut(s)	274
AhdI	GACNNNNNGTC	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	3 cut(s)	30, 610, 853
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Alw26I	GTCTC	3 cut(s)	355, 460, 470
AlwI	GGATC	1 cut(s)	480
AoxI	GGCC	1 cut(s)	956
ApeKI	GCWGC	4 cut(s)	392, 632, 635, 638
ApoI	RAATTY	2 cut(s)	293, 444
AsiGI	ACCGGT	2 cut(s)	243, 762
Asp700I	GAANNNNTTC	1 cut(s)	266
AspS9I	GGNCC	4 cut(s)	28, 608, 956, 983
AsuHPI	GGTGA	6 cut(s)	68, 83, 134, 313, 899, 1022
AsuII	TTCGAA	1 cut(s)	845
AvaII	GGWCC	3 cut(s)	28, 608, 983
BaeGI	GKGCMC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	967
BbvI	GCAGC	4 cut(s)	379, 619, 622, 625
BccI	CCATC	3 cut(s)	124, 670, 975
BcgI	CGANNNNNNTGC	2 cut(s)	825, 859
BciT130I	CCWGG	3 cut(s)	32, 612, 855
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	355, 460, 470
BfaI	CTAG	2 cut(s)	795, 884
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	5 cut(s)	393, 633, 636, 639, 959
BlsI	GCNGC	5 cut(s)	394, 634, 637, 640, 960
Bme1390I	CCNGG	3 cut(s)	32, 612, 855
Bme18I	GGWCC	3 cut(s)	28, 608, 983
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	4 cut(s)	28, 608, 956, 983
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	3 cut(s)	32, 612, 855
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	217, 850
BmuI	ACTGGG	1 cut(s)	51
BpmI	CTGGAG	2 cut(s)	633, 837
Bpu14I	TTCGAA	1 cut(s)	845
BpuEI	CTTGAG	1 cut(s)	136
BsaBI	GATNNNNATC	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	428, 910
BsaWI	WCCGGW	2 cut(s)	243, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	849, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse118I	RCCGGY	2 cut(s)	243, 762
Bse1I	ACTGG	3 cut(s)	46, 674, 1019
Bse3DI	GCAATG	3 cut(s)	28, 502, 843
Bse8I	GATNNNNATC	1 cut(s)	903
BseBI	CCWGG	3 cut(s)	32, 612, 855
BseDI	CCNNGG	2 cut(s)	428, 910
BseGI	GGATG	2 cut(s)	103, 932
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	3 cut(s)	28, 502, 843
BseMII	CTCAG	2 cut(s)	84, 513
BseNI	ACTGG	3 cut(s)	46, 674, 1019
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	379, 619, 622, 625
BseYI	CCCAGC	1 cut(s)	302
Bsh1236I	CGCG	2 cut(s)	128, 961
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	958
BshTI	ACCGGT	2 cut(s)	243, 762
BsiEI	CGRYCG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	244, 763
BslFI	GGGAC	3 cut(s)	319, 902, 996
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	3 cut(s)	355, 460, 470
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	3 cut(s)	319, 902, 996
BsnI	GGCC	1 cut(s)	958
Bso31I	GGTCTC	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	314, 967
Bsp143I	GATC	4 cut(s)	160, 485, 929, 950
BspACI	CCGC	5 cut(s)	26, 80, 134, 365, 959
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	2 cut(s)	85, 514
BspFNI	CGCG	2 cut(s)	128, 961
BspLI	GGNNCC	1 cut(s)	984
BspPI	GGATC	1 cut(s)	480
BspT104I	TTCGAA	1 cut(s)	845
BspTNI	GGTCTC	1 cut(s)	355
BsrDI	GCAATG	3 cut(s)	28, 502, 843
BsrFI	RCCGGY	2 cut(s)	243, 762
BsrI	ACTGG	3 cut(s)	46, 674, 1019
BssAI	RCCGGY	2 cut(s)	243, 762
BssECI	CCNNGG	2 cut(s)	428, 910
BssMI	GATC	4 cut(s)	160, 485, 929, 950
BssT1I	CCWWGG	2 cut(s)	428, 910
Bst2UI	CCWGG	3 cut(s)	32, 612, 855
Bst6I	CTCTTC	1 cut(s)	429
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	963
BstDEI	CTNAG	2 cut(s)	93, 522
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	103, 932
BstFNI	CGCG	2 cut(s)	128, 961
BstKTI	GATC	4 cut(s)	163, 488, 932, 953
BstMAI	GTCTC	3 cut(s)	355, 460, 470
BstMBI	GATC	4 cut(s)	160, 485, 929, 950
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 638, 647
BstNI	CCWGG	3 cut(s)	32, 612, 855
BstPI	GGTNACC	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	30, 610, 853
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	2 cut(s)	128, 961
BstV1I	GCAGC	4 cut(s)	379, 619, 622, 625
BstX2I	RGATCY	1 cut(s)	485
BstXI	CCANNNNNNTGG	2 cut(s)	375, 669
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	958
BtgZI	GCGATG	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	103, 932
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	963
Cfr10I	RCCGGY	2 cut(s)	243, 762
Cfr13I	GGNCC	4 cut(s)	28, 608, 956, 983
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	103
CspAI	ACCGGT	2 cut(s)	243, 762
CviAII	CATG	4 cut(s)	142, 398, 563, 743
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	93, 522
DpnI	GATC	4 cut(s)	162, 487, 931, 952
DpnII	GATC	4 cut(s)	160, 485, 929, 950
DriI	GACNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	429
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	428, 910
Eco24I	GRGCYC	1 cut(s)	967
Eco31I	GGTCTC	1 cut(s)	355
Eco47I	GGWCC	3 cut(s)	28, 608, 983
Eco57I	CTGAAG	2 cut(s)	405, 792
Eco91I	GGTNACC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	608
EcoO65I	GGTNACC	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	30, 610, 853
EcoT14I	CCWWGG	2 cut(s)	428, 910
EcoT38I	GRGCYC	1 cut(s)	967
ErhI	CCWWGG	2 cut(s)	428, 910
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	4 cut(s)	145, 401, 566, 746
FaqI	GGGAC	3 cut(s)	319, 902, 996
FatI	CATG	4 cut(s)	141, 397, 562, 742
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	5 cut(s)	393, 633, 636, 639, 959
FokI	GGATG	2 cut(s)	110, 919
FriOI	GRGCYC	1 cut(s)	967
Fsp4HI	GCNGC	5 cut(s)	393, 633, 636, 639, 959
FspBI	CTAG	2 cut(s)	795, 884
GluI	GCNGC	5 cut(s)	393, 633, 636, 639, 959
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	2 cut(s)	633, 837
HaeIII	GGCC	1 cut(s)	958
HapII	CCGG	2 cut(s)	244, 763
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	4 cut(s)	145, 401, 566, 746
HinfI	GANTC	3 cut(s)	478, 800, 915
HpaII	CCGG	2 cut(s)	244, 763
HphI	GGTGA	6 cut(s)	68, 83, 134, 313, 899, 1022
Hpy188I	TCNGA	5 cut(s)	360, 424, 898, 948, 972
Hpy188III	TCNNGA	2 cut(s)	186, 818
HpyAV	CCTTC	2 cut(s)	521, 973
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	5 cut(s)	230, 291, 507, 552, 687
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 638, 647
HpyF3I	CTNAG	2 cut(s)	93, 522
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	4 cut(s)	145, 401, 566, 746
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 485, 929, 950
LmnI	GCTCC	4 cut(s)	352, 647, 820, 833
Lsp1109I	GCAGC	4 cut(s)	379, 619, 622, 625
LweI	GCATC	2 cut(s)	217, 850
MaeI	CTAG	2 cut(s)	795, 884
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	8 cut(s)	71, 122, 179, 319, 329, 653, 921, 1010
MalI	GATC	4 cut(s)	162, 487, 931, 952
MboI	GATC	4 cut(s)	160, 485, 929, 950
MboII	GAAGA	6 cut(s)	262, 411, 416, 446, 795, 798
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	2 cut(s)	314, 967
MluCI	AATT	8 cut(s)	293, 325, 373, 444, 547, 698, 755, 942
MlyI	GAGTC	2 cut(s)	472, 924
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	9 cut(s)	88, 207, 343, 394, 492, 517, 608, 778, 891
MroXI	GAANNNNTTC	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	765, 897
MspI	CCGG	2 cut(s)	244, 763
MspR9I	CCNGG	3 cut(s)	32, 612, 855
MunI	CAATTG	1 cut(s)	325
MvaI	CCWGG	3 cut(s)	32, 612, 855
MvnI	CGCG	2 cut(s)	128, 961
MwoI	GCNNNNNNNGC	3 cut(s)	86, 638, 647
NdeII	GATC	4 cut(s)	160, 485, 929, 950
NlaIII	CATG	4 cut(s)	145, 401, 566, 746
NlaIV	GGNNCC	1 cut(s)	984
NmuCI	GTSAC	6 cut(s)	71, 122, 179, 319, 921, 1010
NspV	TTCGAA	1 cut(s)	845
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	800
PfoI	TCCNGGA	2 cut(s)	610, 853
PinAI	ACCGGT	2 cut(s)	243, 762
PkrI	GCNGC	5 cut(s)	394, 634, 637, 640, 960
PleI	GAGTC	2 cut(s)	472, 923
PpsI	GAGTC	2 cut(s)	472, 923
PpuMI	RGGWCCY	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	608
Psp6I	CCWGG	3 cut(s)	30, 610, 853
PspEI	GGTNACC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	3 cut(s)	30, 610, 853
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	4 cut(s)	28, 608, 956, 983
PspPPI	RGGWCCY	1 cut(s)	608
PsrI	GAACNNNNNNTAC	2 cut(s)	861, 893
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	765, 897
SatI	GCNGC	5 cut(s)	393, 633, 636, 639, 959
Sau3AI	GATC	4 cut(s)	160, 485, 929, 950
Sau96I	GGNCC	4 cut(s)	28, 608, 956, 983
SchI	GAGTC	2 cut(s)	472, 924
ScrFI	CCNGG	3 cut(s)	32, 612, 855
SduI	GDGCHC	2 cut(s)	314, 967
SetI	ASST	7 cut(s)	36, 199, 311, 357, 466, 610, 912
SfaNI	GCATC	2 cut(s)	217, 850
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	845
SinI	GGWCC	3 cut(s)	28, 608, 983
SmiMI	CAYNNNNRTG	2 cut(s)	765, 897
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	8 cut(s)	293, 325, 373, 444, 547, 698, 755, 942
SsiI	CCGC	5 cut(s)	26, 80, 134, 365, 959
SspMI	CTAG	2 cut(s)	795, 884
StyD4I	CCNGG	3 cut(s)	30, 610, 853
StyI	CCWWGG	2 cut(s)	428, 910
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	3 cut(s)	248, 845, 1029
TasI	AATT	8 cut(s)	293, 325, 373, 444, 547, 698, 755, 942
TauI	GCSGC	1 cut(s)	961
TfiI	GAWTC	1 cut(s)	800
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	6 cut(s)	71, 122, 179, 319, 921, 1010
TseI	GCWGC	4 cut(s)	392, 632, 635, 638
Tsp45I	GTSAC	6 cut(s)	71, 122, 179, 319, 921, 1010
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	3 cut(s)	28, 608, 983
XapI	RAATTY	2 cut(s)	293, 444
XcmI	CCANNNNNNNNNTGG	2 cut(s)	38, 740
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	2 cut(s)	795, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.