Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Forward (+)

3747286 .. 3752315

Gene Structure 5030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G033000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATTATGGAAGAGAAACTAATGTAGTGCAAGTAATCACTGGGAATAGTGTTGGCGGTGATATTTGGTCTGCTGATCAAGCAGTTTGGGCTACTGAGGATGAGTACCGAGTTTGGAATAATGGTGACGCGTTGGCGGACACCATGTCCAACTCGAATTATGATCAAAGGCAATCTCAAAGTCGCTCTGGAAGCGAACCCCCAAATAAGAAATCAAGGAACTCCCAAGATGCAACTTCGTCTAACCGGTCAAAAGCCATTGGGAAAATGTTTTTCAAAACCAAACTTTGTTGCAAATTCCGTGCTGGGACGTGCCCCTACGTCACTAATTGCAACTTTGCTCATAGCATTGAGGAGCTTCGAAGGCCACCTCCAAATTGGCAAGAAATTGTGGCTGCTCATGAGGAAGAAAAGGGGGTATCTTCGGAGCCAAGGGAAGAATATCAAATTCCAATAGTCTCTACAGGTTATGGTGTGGAGACTCAGAGGTCGTATAAAGGGAGGCATTGCAAGAAGTTTTATACTGAGGAAGGCTGCCCTTATGGGGATAATTGTACTTTTCTTCATGATGAGCAGTCGAAGAATCGAGAGAGTGTGGCAATAAGTTTAGGTCCAGGAGGGTATGGTGGTGCTGCAAATGGAGCAAATAACAAGCCATCAAATTGGAAAACAAGGATTTGCAATAAGTGGGAATTGACAGGATATTGCCCATTTGGAAGTAAATGCCATTTTGCTCACGGCGTTGCAGAATTACACCGATATGGTGGTGGGCTTGTGGAGGGGGACGTTAGAGAGTCTTCTTCAGCCCCTCCTGACAATAAGCAGGGTGGAGTACCTTCTAAAACCCCAGCAGATACTGTGGTAGTATCAGTCCCGCTAGTTCCTCATTCTGATGTTTATCACCTCGGAGTTCCATCACAAAGATCATCGATTGTAATTCAGAGGCCTGGGCAGAGAGCCCATCAGAAATGGAAGGGACCAGACAAAATCAGTAGGATATATGGTGACTGGATTGATGAGATCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

343

Amino Acids

37.88

Weight (kDa)

7.12

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	57, 137, 875
AcsI	RAATTY	2 cut(s)	296, 447
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	107, 556, 834
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflIII	ACRYGT	1 cut(s)	129
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	2 cut(s)	613, 946
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	2 cut(s)	463, 473
AlwNI	CAGNNNCTG	1 cut(s)	857
AoxI	GGCC	2 cut(s)	365, 944
ApeKI	GCWGC	3 cut(s)	395, 534, 632
ApoI	RAATTY	2 cut(s)	296, 447
AsiGI	ACCGGT	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	611, 977
AsuHPI	GGTGA	4 cut(s)	71, 137, 893, 1016
AsuII	TTCGAA	1 cut(s)	361
AvaII	GGWCC	2 cut(s)	611, 977
BaeGI	GKGCMC	1 cut(s)	317
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BanII	GRGCYC	1 cut(s)	961
BbsI	GAAGAC	1 cut(s)	789
BbvI	GCAGC	3 cut(s)	382, 521, 619
BccI	CCATC	3 cut(s)	664, 922, 969
BceAI	ACGGC	1 cut(s)	754
BciT130I	CCWGG	2 cut(s)	615, 948
BclI	TGATCA	2 cut(s)	76, 163
BcoDI	GTCTC	2 cut(s)	463, 473
BfaI	CTAG	1 cut(s)	878
BfmI	CTRYAG	1 cut(s)	462
BisI	GCNGC	3 cut(s)	396, 535, 633
BlsI	GCNGC	3 cut(s)	397, 536, 634
Bme1390I	CCNGG	2 cut(s)	615, 948
Bme18I	GGWCC	2 cut(s)	611, 977
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	611, 977
BmiI	GGNNCC	2 cut(s)	429, 978
BmrFI	CCNGG	2 cut(s)	615, 948
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	789
Bpu14I	TTCGAA	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	897
BsaJI	CCNNGG	3 cut(s)	431, 904, 947
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	46, 1013
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	1 cut(s)	897
BseBI	CCWGG	2 cut(s)	615, 948
BseCI	ATCGAT	1 cut(s)	929
BseDI	CCNNGG	3 cut(s)	431, 904, 947
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	87, 497, 516
BseNI	ACTGG	2 cut(s)	46, 1013
BseRI	GAGGAG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	382, 521, 619
BseYI	CCCAGC	2 cut(s)	305, 847
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	367, 946
BshTI	ACCGGT	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	929
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	4 cut(s)	322, 797, 857, 990
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	2 cut(s)	463, 473
BsmFI	GGGAC	4 cut(s)	322, 797, 857, 990
BsnI	GGCC	2 cut(s)	367, 946
Bsp119I	TTCGAA	1 cut(s)	361
Bsp1286I	GDGCHC	2 cut(s)	317, 961
Bsp143I	GATC	4 cut(s)	76, 163, 923, 1020
BspACI	CCGC	3 cut(s)	57, 137, 875
BspANI	GGCC	2 cut(s)	367, 946
BspCNI	CTCAG	3 cut(s)	88, 496, 517
BspDI	ATCGAT	1 cut(s)	929
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	2 cut(s)	400, 565
BspLI	GGNNCC	2 cut(s)	429, 978
BspT104I	TTCGAA	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	46, 1013
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	431, 904, 947
BssMI	GATC	4 cut(s)	76, 163, 923, 1020
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	615, 948
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	7
BstBI	TTCGAA	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	96, 483, 525
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	4 cut(s)	79, 166, 926, 1023
BstMAI	GTCTC	2 cut(s)	463, 473
BstMBI	GATC	4 cut(s)	76, 163, 923, 1020
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 89, 192, 364, 641
BstNI	CCWGG	2 cut(s)	615, 948
BstSCI	CCNGG	2 cut(s)	613, 946
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	382, 521, 619
BstV2I	GAAGAC	1 cut(s)	789
BstXI	CCANNNNNNTGG	1 cut(s)	663
Bsu15I	ATCGAT	1 cut(s)	929
BsuRI	GGCC	2 cut(s)	367, 946
BsuTUI	ATCGAT	1 cut(s)	929
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	857
CciI	TCATGA	2 cut(s)	400, 565
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	611, 977
ClaI	ATCGAT	1 cut(s)	929
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	106, 555, 833
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	3 cut(s)	145, 401, 566
CviQI	GTAC	3 cut(s)	106, 555, 833
DdeI	CTNAG	3 cut(s)	96, 483, 525
DpnI	GATC	4 cut(s)	78, 165, 925, 1022
DpnII	GATC	4 cut(s)	76, 163, 923, 1020
DrdI	GACNNNNNNGTC	1 cut(s)	487
DriI	GACNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	7
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	946
Eco24I	GRGCYC	1 cut(s)	961
Eco47I	GGWCC	2 cut(s)	611, 977
Eco57I	CTGAAG	1 cut(s)	786
EcoRII	CCWGG	2 cut(s)	613, 946
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	961
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	3 cut(s)	148, 404, 569
FaqI	GGGAC	4 cut(s)	322, 797, 857, 990
FatI	CATG	3 cut(s)	144, 400, 565
FauI	CCCGC	1 cut(s)	882
FbaI	TGATCA	2 cut(s)	76, 163
Fnu4HI	GCNGC	3 cut(s)	396, 535, 633
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	961
Fsp4HI	GCNGC	3 cut(s)	396, 535, 633
FspBI	CTAG	1 cut(s)	878
GluI	GCNGC	3 cut(s)	396, 535, 633
GsaI	CCCAGC	2 cut(s)	309, 851
HaeIII	GGCC	2 cut(s)	367, 946
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	148, 404, 569
HinfI	GANTC	3 cut(s)	481, 583, 794
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	4 cut(s)	71, 137, 893, 1016
Hpy188I	TCNGA	6 cut(s)	427, 486, 892, 908, 942, 966
Hpy188III	TCNNGA	5 cut(s)	189, 401, 566, 587, 812
HpyAV	CCTTC	4 cut(s)	357, 524, 846, 967
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	3 cut(s)	311, 321, 786
HpyCH4V	TGCA	8 cut(s)	31, 233, 294, 333, 510, 635, 681, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 89, 192, 364, 641
HpyF3I	CTNAG	3 cut(s)	96, 483, 525
HpySE526I	ACGT	3 cut(s)	311, 321, 786
Hsp92II	CATG	3 cut(s)	148, 404, 569
Ksp22I	TGATCA	2 cut(s)	76, 163
Kzo9I	GATC	4 cut(s)	76, 163, 923, 1020
LmnI	GCTCC	3 cut(s)	355, 427, 641
Lsp1109I	GCAGC	3 cut(s)	382, 521, 619
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	3 cut(s)	311, 321, 786
MaeIII	GTNAC	3 cut(s)	125, 322, 1004
MalI	GATC	4 cut(s)	78, 165, 925, 1022
MboI	GATC	4 cut(s)	76, 163, 923, 1020
MboII	GAAGA	8 cut(s)	24, 414, 419, 449, 554, 592, 789, 792
MhlI	GDGCHC	2 cut(s)	317, 961
MluI	ACGCGT	1 cut(s)	129
MlyI	GAGTC	2 cut(s)	475, 803
MmeI	TCCRAC	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	759, 891
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	615, 948
MvaI	CCWGG	2 cut(s)	615, 948
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	80, 89, 192, 364, 641
NdeII	GATC	4 cut(s)	76, 163, 923, 1020
NlaIII	CATG	3 cut(s)	148, 404, 569
NlaIV	GGNNCC	2 cut(s)	429, 978
NmuCI	GTSAC	3 cut(s)	125, 322, 1004
NspV	TTCGAA	1 cut(s)	361
PagI	TCATGA	2 cut(s)	400, 565
PceI	AGGCCT	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	397, 536, 634
PleI	GAGTC	2 cut(s)	475, 802
PpsI	GAGTC	2 cut(s)	475, 802
Psp6I	CCWGG	2 cut(s)	613, 946
PspFI	CCCAGC	2 cut(s)	305, 847
PspGI	CCWGG	2 cut(s)	613, 946
PspN4I	GGNNCC	2 cut(s)	429, 978
PspPI	GGNCC	2 cut(s)	611, 977
PstNI	CAGNNNCTG	1 cut(s)	857
RsaI	GTAC	3 cut(s)	107, 556, 834
RsaNI	GTAC	3 cut(s)	106, 555, 833
RseI	CAYNNNNRTG	2 cut(s)	759, 891
SatI	GCNGC	3 cut(s)	396, 535, 633
Sau3AI	GATC	4 cut(s)	76, 163, 923, 1020
Sau96I	GGNCC	2 cut(s)	611, 977
SchI	GAGTC	2 cut(s)	475, 803
ScrFI	CCNGG	2 cut(s)	615, 948
SduI	GDGCHC	2 cut(s)	317, 961
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	361
SinI	GGWCC	2 cut(s)	611, 977
SmiMI	CAYNNNNRTG	2 cut(s)	759, 891
SseBI	AGGCCT	1 cut(s)	946
SsiI	CCGC	3 cut(s)	57, 137, 875
SspMI	CTAG	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	2 cut(s)	613, 946
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	3 cut(s)	314, 324, 789
TaqI	TCGA	6 cut(s)	155, 361, 578, 586, 929, 1023
TatI	WGTACW	1 cut(s)	554
TfiI	GAWTC	1 cut(s)	583
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	3 cut(s)	125, 322, 1004
TseI	GCWGC	3 cut(s)	395, 534, 632
Tsp45I	GTSAC	3 cut(s)	125, 322, 1004
TspDTI	ATGAA	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	611, 977
XapI	RAATTY	2 cut(s)	296, 447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.