Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001656.1

Orthogroup ID

OG0013326

Physical Location & Seq

Genomic Coordinates Forward (+)

3019 .. 6159

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001656.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgagttatgctagagaaacaaatgtagttcaagtaatcactgggaatggtggtggagccgatatgtggtctggtgaccaagcagtttgggctactgaggatgagtatcaagtttggaataatggtgatgcattgggggattccatgtccaactcgaattatgatcagaggcaatcccaaagtcgctccggaagcgaacctcccaacaagaaatctaggaacacccaagatgtgacttcctctaaccggtcaaaagccattgggaagatgtttttcaagaccaagctttgttgcaagtttcgagctgggacgtgcccgtatgtcactaattgcaactttgcgcatagcattgaagagcttcggcggccgcctcctaattggcaagagattgtggctgctcatgaggaagaaaaggcggtgtcttcggagcccagggaagagtttcagattccgattgtgaccacaggttatggtgtggagactcagaggtcatataaagggaggcattgcaagaagttctatactgaggaaggttgcccttatggagataattgcacttttcttcatgatgagagttcgaagaatcgggagagtgtggcaataagtttaggtcccggagggtatggtggtgctgcagctgctgctgctgcgggtggagcaaataacaagccatcaaattggaaaacaaggatttgcaataagtgggaattgacaggatattgcccatttggaagcaaatgccattttgctcatggtgttgcagaattacaccgatatggaggtgggcttgtggacggagaaattagagattcttcagtccctcttgacaataagcagggaggaatgccttcgaaaactccagctgataatgtggtagtatcagtccctatagttcctcattctgatttatatcatggagttccatcacaaagatcatcgatagtaagtcagaggccagggcagagagcccatcagaaatggaaggggccagacaaaatcagtaggatatatggtgactggatagatgatatcgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

345

Amino Acids

37.93

Weight (kDa)

7.12

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32360
fragaria_vesca	FvH4_5g22400 FvH4_5g22400
malus_domestica	MD06G1036400.v1.1
prunus_persica	Prupe.5G033000_v2.0.a1 Prupe.5G033000_v2.0.a1
pyrus_communis	pycom06g02990 pycom16g24210
rosa_chinensis	RchiOBHm_Chr7g0210151
rosa_laevigata	RLG00000003060
rosa_multiflora	Rmu_sc0001656.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248580
rosa_rugosa	Rorug07G0118900
rosa_samantha	Rh7AG252400 Rh7BG247500 Rh7CG269400 Rh7DG259700
rosa_wichuraiana	Rw7G021450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc16I	TGCGCA	1 cut(s)	342
AccIII	TCCGGA	1 cut(s)	188
AciI	CCGC	4 cut(s)	364, 368, 416, 650
AcoI	YGGCCR	1 cut(s)	365
AcuI	CTGAAG	1 cut(s)	798
AfiI	CCNNNNNNNGG	2 cut(s)	66, 246
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	32, 277, 353
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	2 cut(s)	431, 955
AluBI	AGCT	5 cut(s)	286, 305, 358, 638, 863
AluI	AGCT	5 cut(s)	286, 305, 358, 638, 863
Alw26I	GTCTC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	188
AoxI	GGCC	3 cut(s)	365, 953, 986
ApeKI	GCWGC	7 cut(s)	395, 632, 635, 638, 641, 644, 647
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	3 cut(s)	357, 441, 847
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	611, 986
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	86, 137, 1025
AsuII	TTCGAA	2 cut(s)	578, 851
AvaII	GGWCC	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	432, 970
BbsI	GAAGAC	1 cut(s)	414
BbvI	GCAGC	7 cut(s)	382, 619, 625, 628, 631, 634, 647
BccI	CCATC	3 cut(s)	679, 931, 978
BciT130I	CCWGG	2 cut(s)	433, 957
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	12, 216
BfmI	CTRYAG	2 cut(s)	633, 888
BisI	GCNGC	9 cut(s)	365, 368, 396, 633, 636, 639, 642, 645, 648
BlsI	GCNGC	9 cut(s)	366, 369, 397, 634, 637, 640, 643, 646, 649
Bme1390I	CCNGG	3 cut(s)	433, 615, 957
Bme18I	GGWCC	1 cut(s)	611
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	611, 986
BmiI	GGNNCC	4 cut(s)	58, 429, 613, 987
BmrFI	CCNGG	3 cut(s)	433, 615, 957
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	843
Bpu14I	TTCGAA	2 cut(s)	578, 851
BpuMI	CCSGG	1 cut(s)	615
Bsa29I	ATCGAT	1 cut(s)	938
BsaBI	GATNNNNATC	2 cut(s)	105, 909
BsaJI	CCNNGG	3 cut(s)	431, 432, 956
BsaWI	WCCGGW	2 cut(s)	188, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 246
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	2 cut(s)	46, 1022
Bse3DI	GCAATG	1 cut(s)	505
Bse8I	GATNNNNATC	2 cut(s)	105, 909
BseAI	TCCGGA	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	433, 957
BseCI	ATCGAT	1 cut(s)	938
BseDI	CCNNGG	3 cut(s)	431, 432, 956
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	2 cut(s)	105, 909
BseLI	CCNNNNNNNGG	2 cut(s)	66, 246
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	3 cut(s)	87, 497, 516
BseNI	ACTGG	2 cut(s)	46, 1022
BseSI	GKGCMC	1 cut(s)	317
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	7 cut(s)	382, 619, 625, 628, 631, 634, 647
BseYI	CCCAGC	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	367, 955, 988
BshTI	ACCGGT	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	938
BsiEI	CGRYCG	1 cut(s)	368
BsiSI	CCGG	3 cut(s)	189, 247, 615
BslFI	GGGAC	4 cut(s)	322, 597, 803, 869
BslI	CCNNNNNNNGG	2 cut(s)	66, 246
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	4 cut(s)	322, 597, 803, 869
BsmI	GAATGC	1 cut(s)	849
BsnI	GGCC	3 cut(s)	367, 955, 988
Bsp119I	TTCGAA	2 cut(s)	578, 851
Bsp1286I	GDGCHC	3 cut(s)	317, 432, 970
Bsp13I	TCCGGA	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	163, 932
BspACI	CCGC	4 cut(s)	364, 368, 416, 650
BspANI	GGCC	3 cut(s)	367, 955, 988
BspCNI	CTCAG	3 cut(s)	88, 496, 517
BspDI	ATCGAT	1 cut(s)	938
BspEI	TCCGGA	1 cut(s)	188
BspHI	TCATGA	2 cut(s)	400, 565
BspLI	GGNNCC	4 cut(s)	58, 429, 613, 987
BspMAI	CTGCAG	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	348
BspT104I	TTCGAA	2 cut(s)	578, 851
BsrDI	GCAATG	1 cut(s)	505
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	46, 1022
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	431, 432, 956
BssMI	GATC	2 cut(s)	163, 932
Bst2UI	CCWGG	2 cut(s)	433, 957
Bst6I	CTCTTC	2 cut(s)	348, 432
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstBI	TTCGAA	2 cut(s)	578, 851
BstDEI	CTNAG	3 cut(s)	96, 483, 525
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	166, 935
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	163, 932
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 192, 364, 638, 641, 644, 647, 656
BstNI	CCWGG	2 cut(s)	433, 957
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	431, 613, 955
BstSFI	CTRYAG	2 cut(s)	633, 888
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	7 cut(s)	382, 619, 625, 628, 631, 634, 647
BstV2I	GAAGAC	1 cut(s)	414
BstXI	CCANNNNNNTGG	1 cut(s)	678
BstZI	CGGCCG	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	938
BsuRI	GGCC	3 cut(s)	367, 955, 988
BsuTUI	ATCGAT	1 cut(s)	938
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	2 cut(s)	400, 565
CciNI	GCGGCCGC	1 cut(s)	365
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	611, 986
ClaI	ATCGAT	1 cut(s)	938
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	5 cut(s)	145, 401, 566, 752, 914
DdeI	CTNAG	3 cut(s)	96, 483, 525
DpnI	GATC	2 cut(s)	165, 934
DpnII	GATC	2 cut(s)	163, 932
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
EaeI	YGGCCR	1 cut(s)	365
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	348, 432
EarI	CTCTTC	2 cut(s)	348, 432
EclXI	CGGCCG	1 cut(s)	365
Eco24I	GRGCYC	2 cut(s)	432, 970
Eco32I	GATATC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	611
Eco52I	CGGCCG	1 cut(s)	365
Eco57I	CTGAAG	1 cut(s)	798
Eco91I	GGTNACC	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	431, 955
EcoRV	GATATC	1 cut(s)	1030
EcoT22I	ATGCAT	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	432, 970
FaeI	CATG	5 cut(s)	148, 404, 569, 755, 917
FaqI	GGGAC	4 cut(s)	322, 597, 803, 869
FatI	CATG	5 cut(s)	144, 400, 565, 751, 913
FauI	CCCGC	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	9 cut(s)	365, 368, 396, 633, 636, 639, 642, 645, 648
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	432, 970
Fsp4HI	GCNGC	9 cut(s)	365, 368, 396, 633, 636, 639, 642, 645, 648
FspBI	CTAG	2 cut(s)	12, 216
FspI	TGCGCA	1 cut(s)	342
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	9 cut(s)	365, 368, 396, 633, 636, 639, 642, 645, 648
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	3 cut(s)	367, 955, 988
HapII	CCGG	3 cut(s)	189, 247, 615
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	5 cut(s)	148, 404, 569, 755, 917
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	5 cut(s)	140, 448, 481, 583, 809
HpaII	CCGG	3 cut(s)	189, 247, 615
HphI	GGTGA	3 cut(s)	86, 137, 1025
Hpy166II	GTNNAC	1 cut(s)	793
Hpy188I	TCNGA	8 cut(s)	168, 427, 447, 453, 486, 904, 951, 975
Hpy188III	TCNNGA	6 cut(s)	189, 277, 401, 566, 587, 824
Hpy8I	GTNNAC	1 cut(s)	793
HpyAV	CCTTC	3 cut(s)	524, 858, 976
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	8 cut(s)	131, 294, 333, 510, 555, 635, 696, 761
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 192, 364, 638, 641, 644, 647, 656
HpyF3I	CTNAG	3 cut(s)	96, 483, 525
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	5 cut(s)	148, 404, 569, 755, 917
HspAI	GCGC	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 932
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	4 cut(s)	56, 191, 427, 656
Lsp1109I	GCAGC	7 cut(s)	382, 619, 625, 628, 631, 634, 647
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	12, 216
MaeII	ACGT	1 cut(s)	311
MaeIII	GTNAC	5 cut(s)	74, 232, 322, 457, 1013
MalI	GATC	2 cut(s)	165, 934
MboI	GATC	2 cut(s)	163, 932
MboII	GAAGA	8 cut(s)	277, 365, 414, 419, 449, 554, 592, 804
MhlI	GDGCHC	3 cut(s)	317, 432, 970
MluCI	AATT	8 cut(s)	157, 328, 376, 550, 676, 707, 764, 801
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	133
MroI	TCCGGA	1 cut(s)	188
MroXI	GAANNNNTTC	3 cut(s)	357, 441, 847
MslI	CAYNNNNRTG	1 cut(s)	774
MspA1I	CMGCKG	2 cut(s)	638, 863
MspI	CCGG	3 cut(s)	189, 247, 615
MspR9I	CCNGG	3 cut(s)	433, 615, 957
Mva1269I	GAATGC	1 cut(s)	849
MvaI	CCWGG	2 cut(s)	433, 957
MwoI	GCNNNNNNNGC	8 cut(s)	89, 192, 364, 638, 641, 644, 647, 656
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	2 cut(s)	163, 932
NlaIII	CATG	5 cut(s)	148, 404, 569, 755, 917
NlaIV	GGNNCC	4 cut(s)	58, 429, 613, 987
NmuCI	GTSAC	5 cut(s)	74, 232, 322, 457, 1013
NotI	GCGGCCGC	1 cut(s)	365
NsbI	TGCGCA	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	133
NspV	TTCGAA	2 cut(s)	578, 851
PagI	TCATGA	2 cut(s)	400, 565
PasI	CCCWGGG	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	849
PdmI	GAANNNNTTC	3 cut(s)	357, 441, 847
PfeI	GAWTC	4 cut(s)	140, 448, 583, 809
PfoI	TCCNGGA	1 cut(s)	613
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	9 cut(s)	366, 369, 397, 634, 637, 640, 643, 646, 649
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	431, 955
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	431, 955
PspN4I	GGNNCC	4 cut(s)	58, 429, 613, 987
PspPI	GGNCC	2 cut(s)	611, 986
PspPPI	RGGWCCY	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	641
PvuII	CAGCTG	2 cut(s)	638, 863
RseI	CAYNNNNRTG	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	348
SatI	GCNGC	9 cut(s)	365, 368, 396, 633, 636, 639, 642, 645, 648
Sau3AI	GATC	2 cut(s)	163, 932
Sau96I	GGNCC	2 cut(s)	611, 986
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	433, 615, 957
SduI	GDGCHC	3 cut(s)	317, 432, 970
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	2 cut(s)	633, 888
SfuI	TTCGAA	2 cut(s)	578, 851
SinI	GGWCC	1 cut(s)	611
SmiMI	CAYNNNNRTG	1 cut(s)	774
Sse9I	AATT	8 cut(s)	157, 328, 376, 550, 676, 707, 764, 801
SsiI	CCGC	4 cut(s)	364, 368, 416, 650
SspMI	CTAG	2 cut(s)	12, 216
StyD4I	CCNGG	3 cut(s)	431, 613, 955
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	6 cut(s)	155, 301, 578, 851, 938, 1032
TasI	AATT	8 cut(s)	157, 328, 376, 550, 676, 707, 764, 801
TauI	GCSGC	2 cut(s)	367, 370
TfiI	GAWTC	4 cut(s)	140, 448, 583, 809
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	5 cut(s)	74, 232, 322, 457, 1013
TseI	GCWGC	7 cut(s)	395, 632, 635, 638, 641, 644, 647
Tsp45I	GTSAC	5 cut(s)	74, 232, 322, 457, 1013
TspDTI	ATGAA	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	810
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmnI	GAANNNNTTC	3 cut(s)	357, 441, 847
XspI	CTAG	2 cut(s)	12, 216
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.