Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Reverse (-)

11931842 .. 11934759

Gene Structure 2918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGAATGGGAAGGTATCAGAAATCTGCAACTTCTGGTGTTTCAGCTAGATGGGTTTTTGTTCTCTGTATTTCTAGCTTCCTTCTTGGTGTTCTTGTCGTTAACAGGCTTTTGGCAAGTTTTGAAACCGTAGATGGCATTGAGAGAGCTTCACCTGAGCAAAATGATCAATCTAGATCACTTAATCCTCTTGTTGATTGTGAGAGCAAGGAAGGAGACATTCTATCTCGAGTTTCGCATACTCATGATGTTATCAAGACATTAGACAAGACAATTTCTTCTCTTGAGGTAGAACTAGCTACAGCTCGAGCAGCAAGATCTGATGGTAGAGATGGATCTCCAGCTGTTGCAAAAACAGTAGCAGACCAATCGAAGATTCGGCCTCGGATGTTCTTTGTGATGGGAATCATGACTGCTTTCAGTAGCAGAAAACGAAGAGACTCCATAAGAGGAACTTGGCTTCCTAAAGGGGATGAATTGAAAAGATTAGAGACAGAGAAGGGAATCATTATGAGATTTGTTATAGGTCACAGTTCTTCTCCTGGAGGAGTCTTGGACCACACCATTGAAGCTGAAGAAGAACAACACAAAGACTTCTTTCGACTGAATCACATAGAAGGTTATCATGAATTATCATCTAAAACCCAAATATACTTCTCATCTGCTGTTGCAAAATGGGATGCAGACTTCTACATCAAAGTGGATGATGATGTTCACGTAAATCTCGGAATGCTTGGTTCTACATTGGCTCGCCACAGATCAAAACCGCGAGTGTACATTGGTTGCATGAAGTCTGGACCTGTCCTTGCTCAAAAAGGAGTCAAATACCATGAGCCAGAATATTGGAAGTTTGGTGAAGAAGGAAACAAATACTTCAGACATGCAACTGGACAAATCTATGCAATCTCCAAAGATTTAGCAACTTATATCTCAGTTAACCGGCAACTACTTCACAAGTATGCAAATGAAGATGTCTCTTTAGGTTCTTGGTTCATTGGTCTCGATGTTGAACATATCGACGATAGAAGCCTCTGCTGTGGAACACCTTTAGATTGTGAGTGGAAGGGTCAAGCAGGAAACCCTTGCGCAGCATCGTTCGATTGGAGCTGTAGTGGAATCTGCAAATCCGTAGATAGAATGCTTGAAGTACATCAACGTTGTGGTGAAGGCGATGGAGCAATTTGGCATAGTAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

399

Amino Acids

44.6

Weight (kDa)

6.74

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 105	5.8e-23	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	144 - 341	1.1e-45	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1087
AccII	CGCG	1 cut(s)	769
AciI	CCGC	1 cut(s)	767
AclI	AACGTT	1 cut(s)	1156
AclWI	GGATC	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	594, 859
AfaI	GTAC	2 cut(s)	776, 1149
AgsI	TTSAA	5 cut(s)	125, 481, 569, 1010, 1145
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
AluBI	AGCT	8 cut(s)	47, 78, 149, 299, 305, 344, 572, 1107
AluI	AGCT	8 cut(s)	47, 78, 149, 299, 305, 344, 572, 1107
Alw26I	GTCTC	5 cut(s)	210, 432, 485, 979, 1004
AlwI	GGATC	1 cut(s)	343
Ama87I	CYCGRG	2 cut(s)	228, 306
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	311, 1088
AspLEI	GCGC	1 cut(s)	1088
AspS9I	GGNCC	2 cut(s)	556, 797
AsuHPI	GGTGA	3 cut(s)	144, 866, 1175
AvaI	CYCGRG	2 cut(s)	228, 306
AvaII	GGWCC	2 cut(s)	556, 797
BbvI	GCAGC	2 cut(s)	323, 1100
BccI	CCATC	6 cut(s)	45, 128, 317, 326, 394, 1166
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BciT130I	CCWGG	1 cut(s)	543
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	5 cut(s)	210, 432, 485, 979, 1004
BfaI	CTAG	4 cut(s)	48, 75, 174, 296
BfmI	CTRYAG	2 cut(s)	300, 1108
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	2 cut(s)	312, 1089
BlsI	GCNGC	2 cut(s)	313, 1090
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	556, 797
BmeT110I	CYCGRG	2 cut(s)	228, 306
BmgT120I	GGNCC	2 cut(s)	556, 797
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	2 cut(s)	670, 1100
BpmI	CTGGAG	2 cut(s)	324, 564
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	1004
BsaJI	CCNNGG	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	1096, 1126
Bse118I	RCCGGY	1 cut(s)	939
Bse1I	ACTGG	1 cut(s)	892
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	393, 478, 685, 709
BseJI	GATNNNNATC	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	147, 945
BseNI	ACTGG	1 cut(s)	892
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	2 cut(s)	323, 1100
Bsh1236I	CGCG	1 cut(s)	769
BshFI	GGCC	1 cut(s)	382
BsiHKCI	CYCGRG	2 cut(s)	228, 306
BsiSI	CCGG	1 cut(s)	940
BsmAI	GTCTC	5 cut(s)	210, 432, 485, 979, 1004
BsmI	GAATGC	2 cut(s)	735, 1143
BsnI	GGCC	1 cut(s)	382
Bso31I	GGTCTC	1 cut(s)	1004
BsoBI	CYCGRG	2 cut(s)	228, 306
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	5 cut(s)	166, 176, 317, 335, 758
BspACI	CCGC	1 cut(s)	767
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	148, 944
BspFNI	CGCG	1 cut(s)	769
BspHI	TCATGA	3 cut(s)	244, 408, 625
BspPI	GGATC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	1004
BsrFI	RCCGGY	1 cut(s)	939
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	892
BssAI	RCCGGY	1 cut(s)	939
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	5 cut(s)	166, 176, 317, 335, 758
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	3 cut(s)	130, 358, 533
Bst6I	CTCTTC	1 cut(s)	430
BstAUI	TGTACA	1 cut(s)	774
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	751
BstDEI	CTNAG	2 cut(s)	156, 931
BstF5I	GGATG	4 cut(s)	393, 478, 685, 709
BstFNI	CGCG	1 cut(s)	769
BstHHI	GCGC	1 cut(s)	1088
BstKTI	GATC	5 cut(s)	169, 179, 320, 338, 761
BstMAI	GTCTC	5 cut(s)	210, 432, 485, 979, 1004
BstMBI	GATC	5 cut(s)	166, 176, 317, 335, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	884
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	2 cut(s)	300, 1108
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	2 cut(s)	323, 1100
BstX2I	RGATCY	2 cut(s)	317, 335
BstXI	CCANNNNNNTGG	1 cut(s)	843
BstYI	RGATCY	2 cut(s)	317, 335
BsuRI	GGCC	1 cut(s)	382
BtgZI	GCGATG	1 cut(s)	1185
BtsCI	GGATG	4 cut(s)	393, 478, 685, 709
Cac8I	GCNNGC	1 cut(s)	751
CciI	TCATGA	3 cut(s)	244, 408, 625
CfoI	GCGC	1 cut(s)	1088
Cfr10I	RCCGGY	1 cut(s)	939
Cfr13I	GGNCC	2 cut(s)	556, 797
Csp6I	GTAC	2 cut(s)	775, 1148
CviAII	CATG	6 cut(s)	245, 409, 626, 787, 830, 881
CviQI	GTAC	2 cut(s)	775, 1148
DdeI	CTNAG	2 cut(s)	156, 931
DpnI	GATC	5 cut(s)	168, 178, 319, 337, 760
DpnII	GATC	5 cut(s)	166, 176, 317, 335, 758
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	1004
Eco47I	GGWCC	2 cut(s)	556, 797
Eco57I	CTGAAG	2 cut(s)	594, 859
Eco88I	CYCGRG	2 cut(s)	228, 306
EcoRII	CCWGG	1 cut(s)	541
FaeI	CATG	6 cut(s)	248, 412, 629, 790, 833, 884
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FatI	CATG	6 cut(s)	244, 408, 625, 786, 829, 880
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	312, 1089
FokI	GGATG	4 cut(s)	400, 485, 692, 716
Fsp4HI	GCNGC	2 cut(s)	312, 1089
FspBI	CTAG	4 cut(s)	48, 75, 174, 296
FspI	TGCGCA	1 cut(s)	1087
GlaI	GCGC	1 cut(s)	1087
GluI	GCNGC	2 cut(s)	312, 1089
GsuI	CTGGAG	2 cut(s)	324, 564
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	940
HhaI	GCGC	1 cut(s)	1088
Hin1II	CATG	6 cut(s)	248, 412, 629, 790, 833, 884
Hin6I	GCGC	1 cut(s)	1086
HinP1I	GCGC	1 cut(s)	1086
HincII	GTYRAC	2 cut(s)	103, 937
HindII	GTYRAC	2 cut(s)	103, 937
HinfI	GANTC	8 cut(s)	376, 405, 440, 504, 549, 607, 819, 1116
HpaI	GTTAAC	2 cut(s)	103, 937
HpaII	CCGG	1 cut(s)	940
HphI	GGTGA	3 cut(s)	144, 866, 1175
Hpy166II	GTNNAC	4 cut(s)	103, 715, 775, 937
Hpy188I	TCNGA	5 cut(s)	21, 322, 387, 728, 878
Hpy188III	TCNNGA	9 cut(s)	174, 228, 245, 256, 284, 409, 626, 795, 1001
Hpy8I	GTNNAC	4 cut(s)	103, 715, 775, 937
Hpy99I	CGWCG	1 cut(s)	1022
HpyAV	CCTTC	8 cut(s)	6, 92, 206, 493, 611, 854, 1057, 1160
HpyCH4III	ACNGT	3 cut(s)	130, 358, 533
HpyCH4IV	ACGT	2 cut(s)	717, 1156
HpyCH4V	TGCA	9 cut(s)	29, 350, 671, 683, 786, 884, 902, 962, 1122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	156, 931
HpySE526I	ACGT	2 cut(s)	717, 1156
Hsp92II	CATG	6 cut(s)	248, 412, 629, 790, 833, 884
HspAI	GCGC	1 cut(s)	1086
Ksp22I	TGATCA	1 cut(s)	166
KspAI	GTTAAC	2 cut(s)	103, 937
Kzo9I	GATC	5 cut(s)	166, 176, 317, 335, 758
LmnI	GCTCC	2 cut(s)	1104, 1175
Lsp1109I	GCAGC	2 cut(s)	323, 1100
LweI	GCATC	2 cut(s)	670, 1100
MaeI	CTAG	4 cut(s)	48, 75, 174, 296
MaeII	ACGT	2 cut(s)	717, 1156
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	5 cut(s)	168, 178, 319, 337, 760
MboI	GATC	5 cut(s)	166, 176, 317, 335, 758
MboII	GAAGA	8 cut(s)	270, 385, 447, 528, 587, 590, 869, 980
MflI	RGATCY	2 cut(s)	317, 335
MluCI	AATT	4 cut(s)	273, 476, 629, 1179
MlyI	GAGTC	3 cut(s)	434, 558, 828
MnlI	CCTC	6 cut(s)	198, 280, 393, 443, 539, 1040
MseI	TTAA	3 cut(s)	102, 183, 936
MslI	CAYNNNNRTG	3 cut(s)	243, 698, 957
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	940
MspR9I	CCNGG	1 cut(s)	543
Mva1269I	GAATGC	2 cut(s)	735, 1143
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	5 cut(s)	166, 176, 317, 335, 758
NlaIII	CATG	6 cut(s)	248, 412, 629, 790, 833, 884
NmuCI	GTSAC	1 cut(s)	527
NsbI	TGCGCA	1 cut(s)	1087
NspI	RCATGY	1 cut(s)	884
PaeR7I	CTCGAG	2 cut(s)	228, 306
PagI	TCATGA	3 cut(s)	244, 408, 625
PctI	GAATGC	2 cut(s)	735, 1143
PfeI	GAWTC	5 cut(s)	376, 405, 504, 607, 1116
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	313, 1090
PleI	GAGTC	3 cut(s)	434, 557, 827
PpsI	GAGTC	3 cut(s)	434, 557, 827
Ppu21I	YACGTR	1 cut(s)	718
Psp1406I	AACGTT	1 cut(s)	1156
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	556, 797
PspXI	VCTCGAGB	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	317, 335
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	776, 1149
RsaNI	GTAC	2 cut(s)	775, 1148
RseI	CAYNNNNRTG	3 cut(s)	243, 698, 957
SaqAI	TTAA	3 cut(s)	102, 183, 936
SatI	GCNGC	2 cut(s)	312, 1089
Sau3AI	GATC	5 cut(s)	166, 176, 317, 335, 758
Sau96I	GGNCC	2 cut(s)	556, 797
SchI	GAGTC	3 cut(s)	434, 558, 828
ScrFI	CCNGG	1 cut(s)	543
SfaNI	GCATC	2 cut(s)	670, 1100
SfcI	CTRYAG	2 cut(s)	300, 1108
Sfr274I	CTCGAG	2 cut(s)	228, 306
SinI	GGWCC	2 cut(s)	556, 797
SlaI	CTCGAG	2 cut(s)	228, 306
SmiMI	CAYNNNNRTG	3 cut(s)	243, 698, 957
SmlI	CTYRAG	3 cut(s)	228, 284, 306
SmoI	CTYRAG	3 cut(s)	228, 284, 306
Sse9I	AATT	4 cut(s)	273, 476, 629, 1179
SsiI	CCGC	1 cut(s)	767
SspI	AATATT	1 cut(s)	842
SspMI	CTAG	4 cut(s)	48, 75, 174, 296
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	3 cut(s)	130, 358, 533
TaiI	ACGT	2 cut(s)	720, 1159
TaqI	TCGA	7 cut(s)	229, 307, 371, 601, 1002, 1017, 1098
TasI	AATT	4 cut(s)	273, 476, 629, 1179
TatI	WGTACW	2 cut(s)	774, 1147
TfiI	GAWTC	5 cut(s)	376, 405, 504, 607, 1116
Tru1I	TTAA	3 cut(s)	102, 183, 936
Tru9I	TTAA	3 cut(s)	102, 183, 936
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	2 cut(s)	311, 1088
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	5 cut(s)	489, 642, 803, 981, 982
TspGWI	ACGGA	1 cut(s)	1117
VpaK11BI	GGWCC	2 cut(s)	556, 797
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	1 cut(s)	884
XhoI	CTCGAG	2 cut(s)	228, 306
XspI	CTAG	4 cut(s)	48, 75, 174, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.