Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Reverse (-)

6038053 .. 6042067

Gene Structure 4015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1034600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGTCTCAGCAGACCTCACAAGGTCGGCAATGGAGTCCCCGCCAGATGGGTTTCTCTCTTCTGCATTGCCAGCTTCTTCCTCGGTGTTCTTGTTGTCAACAGGTTTTGGGGTGTTCCCGATCCAGAGAAAATTGATGAGGAGGCTGCACCACTGGAGAAAGATCAATCAAGAAGAGTTCTGCATCCCATAGCTAATTGTGAGAAGAAGGAGGCCGCTAATGGCGTAGGAGACATCCTTTCTCAAGTCTCGCAAACACATGATGTGATCATGGCATTGGATAAGACAATTTCCACATTGGAGGTCCAGCTAGCGACAGCTAGATCTTCCAAATATGGAAATGATGAAGGATCTCCTATGGTGATAAAACCAGGAGGTGAGCCATTGAAAGAGCGCCAGAAGGTTTTCTTTGTGATGGGAATCATGACTGCCTTTAGCAGCCGAAAACGAAGGGAGTCAATCAGGGAAACATGGATGCCACAAGGGGATGAGTTAAAGAAGTTAGAGGAAGAAAAGGGAATTATAATGCGGTTTGTTATTGGACACAGTGCAACTACAGGAGGCGTTTTGGATCGTGCCATTGAGGCAGAAGAGGAAAAACATAAGGATTTTTTCCGACTGAATCACATAGAAGGATATCGTGAGTTGTCGTCAAAAACCCAAATATATTTTACGGCGGCTGTCTCTAAGTGGGATGCTGACTTTTATATCAAGGTTGATGATGATGTGCACATAAATCTTGGAATGGTTGGTTCTACTTTGGCCCGTCATAGATCAAAACCTCGTACATATATCGGTTGCATGAAGTCTGGACCTGTCCTGGCGAATAAGGGGGTCAAGTACCATGAACCGGAATATTGGAAATTCGGAGAGGAGGGAAATAAGTATTTTCGCCACGCAACAGGTCAAATATACGCAATTTCCAAAGATTTAGCAACTTACATTTCAGTGCATCACCACATACTTCACAAATATGCAAATGAGGATGTCTCTTTGGGTTCTTGGTTTATTGGTCTTGATGTTGAGCACATTGACGAGCGAAGCCTTTGCTGTGGAACTCCTCCTGAGTGTGAGTGGAAAGCTCAAGCAGGAAATCCTTGTGCTGCATCGTTCGACTGGAGCTGCAGCGGCATATGCAAATCGGTGGAGAGAATGGAGGAGGTGCATGAGCGATGTGGGGAAGGTGATGAAGCTATTTGGCACACTAGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

405

Amino Acids

45.51

Weight (kDa)

6.2

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	15 - 110	1.1e-23	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	149 - 345	1.2e-47	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AciI	CCGC	5 cut(s)	42, 216, 529, 677, 1128
AclWI	GGATC	3 cut(s)	116, 358, 579
AcsI	RAATTY	1 cut(s)	863
AfaI	GTAC	2 cut(s)	787, 842
AfiI	CCNNNNNNNGG	2 cut(s)	48, 850
AgsI	TTSAA	1 cut(s)	388
AhlI	ACTAGT	1 cut(s)	1205
AjnI	CCWGG	2 cut(s)	370, 819
AluBI	AGCT	7 cut(s)	75, 194, 310, 320, 1082, 1122, 1193
AluI	AGCT	7 cut(s)	75, 194, 310, 320, 1082, 1122, 1193
Alw21I	GWGCWC	2 cut(s)	732, 1029
Alw26I	GTCTC	5 cut(s)	11, 225, 253, 688, 994
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	3 cut(s)	116, 358, 579
AoxI	GGCC	2 cut(s)	213, 762
ApaLI	GTGCAC	1 cut(s)	728
ApeKI	GCWGC	5 cut(s)	146, 438, 1103, 1122, 1125
ApoI	RAATTY	1 cut(s)	863
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	304, 763, 812
AsuHPI	GGTGA	4 cut(s)	373, 389, 947, 1196
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	304, 812
BaeGI	GKGCMC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	732, 1029
BbvI	GCAGC	5 cut(s)	133, 450, 1090, 1109, 1137
BccI	CCATC	2 cut(s)	42, 409
BceAI	ACGGC	1 cut(s)	690
BcgI	CGANNNNNNTGC	2 cut(s)	1029, 1063
BciT130I	CCWGG	2 cut(s)	372, 821
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	5 cut(s)	11, 225, 253, 688, 994
BcuI	ACTAGT	1 cut(s)	1205
BfaI	CTAG	3 cut(s)	311, 321, 1206
BfmI	CTRYAG	2 cut(s)	555, 1123
BfoI	RGCGCY	1 cut(s)	397
BglI	GCCNNNNNGGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	8 cut(s)	147, 216, 439, 678, 1104, 1123, 1126, 1129
BlsI	GCNGC	8 cut(s)	148, 217, 440, 679, 1105, 1124, 1127, 1130
Bme1390I	CCNGG	2 cut(s)	372, 821
Bme18I	GGWCC	2 cut(s)	304, 812
BmgT120I	GGNCC	3 cut(s)	304, 763, 812
BmrFI	CCNGG	2 cut(s)	372, 821
BmsI	GCATC	5 cut(s)	193, 465, 685, 961, 1115
BmtI	GCTAGC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	2 cut(s)	176, 1138
BpuEI	CTTGAG	2 cut(s)	228, 1068
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	850
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 850
Bse1I	ACTGG	2 cut(s)	159, 1121
Bse3DI	GCAATG	2 cut(s)	37, 66
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	2 cut(s)	372, 821
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	6 cut(s)	184, 234, 480, 493, 700, 991
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	48, 850
BseMI	GCAATG	2 cut(s)	37, 66
BseMII	CTCAG	2 cut(s)	22, 1056
BseNI	ACTGG	2 cut(s)	159, 1121
BseRI	GAGGAG	4 cut(s)	155, 887, 1050, 1172
BseSI	GKGCMC	1 cut(s)	732
BseXI	GCAGC	5 cut(s)	133, 450, 1090, 1109, 1137
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	215, 764
BsiHKAI	GWGCWC	2 cut(s)	732, 1029
BsiSI	CCGG	1 cut(s)	851
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	48, 850
BsmAI	GTCTC	5 cut(s)	11, 225, 253, 688, 994
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	215, 764
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	732, 1029
Bsp143I	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
BspACI	CCGC	5 cut(s)	42, 216, 529, 677, 1128
BspANI	GGCC	2 cut(s)	215, 764
BspCNI	CTCAG	2 cut(s)	21, 1057
BspHI	TCATGA	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	1127
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	3 cut(s)	116, 358, 579
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	37, 66
BsrI	ACTGG	2 cut(s)	159, 1121
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
Bst2UI	CCWGG	2 cut(s)	372, 821
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	3 cut(s)	65, 169, 585
BstC8I	GCNNGC	2 cut(s)	73, 312
BstDEI	CTNAG	3 cut(s)	8, 687, 1065
BstF5I	GGATG	6 cut(s)	184, 234, 480, 493, 700, 991
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	7 cut(s)	124, 166, 270, 326, 353, 574, 776
BstMAI	GTCTC	5 cut(s)	11, 225, 253, 688, 994
BstMBI	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 584, 1128, 1134
BstNI	CCWGG	2 cut(s)	372, 821
BstSCI	CCNGG	2 cut(s)	370, 819
BstSFI	CTRYAG	2 cut(s)	555, 1123
BstSLI	GKGCMC	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	133, 450, 1090, 1109, 1137
BstX2I	RGATCY	2 cut(s)	323, 350
BstYI	RGATCY	2 cut(s)	323, 350
BsuRI	GGCC	2 cut(s)	215, 764
BtgZI	GCGATG	1 cut(s)	1186
BtsCI	GGATG	6 cut(s)	184, 234, 480, 493, 700, 991
BtsIMutI	CAGTG	3 cut(s)	152, 553, 954
Cac8I	GCNNGC	2 cut(s)	73, 312
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	3 cut(s)	304, 763, 812
Csp6I	GTAC	2 cut(s)	786, 841
CviAII	CATG	7 cut(s)	260, 271, 424, 471, 802, 845, 1166
CviQI	GTAC	2 cut(s)	786, 841
DdeI	CTNAG	3 cut(s)	8, 687, 1065
DpnI	GATC	7 cut(s)	123, 165, 269, 325, 352, 573, 775
DpnII	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
Eam1104I	CTCTTC	3 cut(s)	65, 169, 585
EarI	CTCTTC	3 cut(s)	65, 169, 585
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	304, 812
EcoRII	CCWGG	2 cut(s)	370, 819
EcoRV	GATATC	1 cut(s)	638
FaeI	CATG	7 cut(s)	263, 274, 427, 474, 805, 848, 1169
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	7 cut(s)	259, 270, 423, 470, 801, 844, 1165
FauI	CCCGC	1 cut(s)	49
FauNDI	CATATG	1 cut(s)	1133
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	8 cut(s)	147, 216, 439, 678, 1104, 1123, 1126, 1129
FokI	GGATG	6 cut(s)	171, 221, 487, 500, 707, 998
Fsp4HI	GCNGC	8 cut(s)	147, 216, 439, 678, 1104, 1123, 1126, 1129
FspBI	CTAG	3 cut(s)	311, 321, 1206
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	8 cut(s)	147, 216, 439, 678, 1104, 1123, 1126, 1129
GsuI	CTGGAG	2 cut(s)	176, 1138
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	215, 764
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	7 cut(s)	263, 274, 427, 474, 805, 848, 1169
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	36, 420, 455, 622
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	4 cut(s)	373, 389, 947, 1196
Hpy166II	GTNNAC	2 cut(s)	100, 730
Hpy188I	TCNGA	3 cut(s)	617, 869, 1214
Hpy188III	TCNNGA	8 cut(s)	119, 125, 171, 424, 641, 810, 1016, 1064
Hpy8I	GTNNAC	2 cut(s)	100, 730
HpyAV	CCTTC	6 cut(s)	202, 341, 394, 444, 626, 1175
HpyCH4III	ACNGT	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 584, 1128, 1134
HpyF3I	CTNAG	3 cut(s)	8, 687, 1065
Hsp92II	CATG	7 cut(s)	263, 274, 427, 474, 805, 848, 1169
HspAI	GCGC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
LmnI	GCTCC	1 cut(s)	1119
Lsp1109I	GCAGC	5 cut(s)	133, 450, 1090, 1109, 1137
LweI	GCATC	5 cut(s)	193, 465, 685, 961, 1115
MaeI	CTAG	3 cut(s)	311, 321, 1206
MalI	GATC	7 cut(s)	123, 165, 269, 325, 352, 573, 775
MboI	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
MboII	GAAGA	7 cut(s)	52, 70, 186, 217, 318, 521, 602
MflI	RGATCY	2 cut(s)	323, 350
MhlI	GDGCHC	2 cut(s)	732, 1029
MluCI	AATT	6 cut(s)	132, 196, 288, 519, 863, 918
MlyI	GAGTC	2 cut(s)	45, 464
MmeI	TCCRAC	1 cut(s)	640
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	2 cut(s)	947, 972
MspA1I	CMGCKG	1 cut(s)	1128
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	2 cut(s)	372, 821
MvaI	CCWGG	2 cut(s)	372, 821
MwoI	GCNNNNNNNGC	4 cut(s)	72, 584, 1128, 1134
NdeI	CATATG	1 cut(s)	1133
NdeII	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	7 cut(s)	263, 274, 427, 474, 805, 848, 1169
PagI	TCATGA	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	420, 622
PkrI	GCNGC	8 cut(s)	148, 217, 440, 679, 1105, 1124, 1127, 1130
PleI	GAGTC	2 cut(s)	44, 463
PpsI	GAGTC	2 cut(s)	44, 463
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	370, 819
PspGI	CCWGG	2 cut(s)	370, 819
PspPI	GGNCC	3 cut(s)	304, 763, 812
PstI	CTGCAG	1 cut(s)	1127
PsuI	RGATCY	2 cut(s)	323, 350
RsaI	GTAC	2 cut(s)	787, 842
RsaNI	GTAC	2 cut(s)	786, 841
RseI	CAYNNNNRTG	2 cut(s)	947, 972
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	8 cut(s)	147, 216, 439, 678, 1104, 1123, 1126, 1129
Sau3AI	GATC	7 cut(s)	121, 163, 267, 323, 350, 571, 773
Sau96I	GGNCC	3 cut(s)	304, 763, 812
SchI	GAGTC	2 cut(s)	45, 464
ScrFI	CCNGG	2 cut(s)	372, 821
SduI	GDGCHC	2 cut(s)	732, 1029
SfaNI	GCATC	5 cut(s)	193, 465, 685, 961, 1115
SfcI	CTRYAG	2 cut(s)	555, 1123
SinI	GGWCC	2 cut(s)	304, 812
SmiMI	CAYNNNNRTG	2 cut(s)	947, 972
SmlI	CTYRAG	2 cut(s)	243, 1083
SmoI	CTYRAG	2 cut(s)	243, 1083
SpeI	ACTAGT	1 cut(s)	1205
Sse9I	AATT	6 cut(s)	132, 196, 288, 519, 863, 918
SsiI	CCGC	5 cut(s)	42, 216, 529, 677, 1128
SspI	AATATT	1 cut(s)	857
SspMI	CTAG	3 cut(s)	311, 321, 1206
StyD4I	CCNGG	2 cut(s)	370, 819
TaaI	ACNGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	1113
TasI	AATT	6 cut(s)	132, 196, 288, 519, 863, 918
TauI	GCSGC	3 cut(s)	218, 680, 1131
TfiI	GAWTC	2 cut(s)	420, 622
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	3 cut(s)	159, 553, 954
TseI	GCWGC	5 cut(s)	146, 438, 1103, 1122, 1125
TspDTI	ATGAA	4 cut(s)	360, 818, 861, 1203
TspRI	CASTG	3 cut(s)	159, 553, 954
VneI	GTGCAC	1 cut(s)	728
VpaK11BI	GGWCC	2 cut(s)	304, 812
XapI	RAATTY	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	3 cut(s)	311, 321, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.