FvH4_5g10510

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007011
Physical Location & Seq
Forward (+)
5980036 .. 5984547
4512 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10510.t6

Sequence Viewer

Length: 1218 bp
ATGAAGATGGGTGTGAGCAGACCTCACAAGGTTGGCAATGGAGTCTCGACCAGATGGGTTTCTCTCTTCTGCATTGCCAGCTTCTTCTTGGGTGTTCTTGTTGTCAACAGGTTTTGGGCTGCCATTGATCCGGATAAAATGGATGAAGAGGCTTCATCACTGGAGAAACATCAATCGATTTCTCTTCAGTCTGCTGTCAATTGTGAGAAGAAGGCGAACACTGATGAGGCGGGAGACATCTTTTCTCAAGTCTCGCAAACACATGATGTGATCAGGAAGCTAGACAAGACAATCTCCGCATTGGAGGTGCAGCTAGCAGCAGCTAGAGCTTCCAAATCTGACAATAATGAAGGATCTCCGGTGTTTACAAAACCAGGAAGCGAATCATTCGAGGAGCGCCAAAAGGTTTTCTTTGTCATGGGAATCATGACTGCCTTCAGCAGCAGAAAGCGAAGGGATTCAATCAGGGAAACATGGATGCCTGGAGGTGACGAGTTAAAGAAGTTAGAGACAGAGAAGGGAATTATAATGCGGTTTGTTATTGGACACAGTGCATCCACTGGTGGTGTTTTGGACCGTGCCATTGATGCAGAAGATGTAAAACACAAGGATTTTTTCCGACTGAACCATATAGAGGGATACCATGAATTATCGTCCAAAACCCAAACATATTTTACAGCAGCTGTCAATAAGTGGGATGCTGACTTTTATATTAAAGTTGATGATGATGTGCACGTAAATCTTGGTATGGTTGGTTCTACTTTGGCCCGCCATAGATCAAAGCCTCGTACGTATATTGGATGCATGAAGTCTGGACCTGTCCTGGCACATCAGGGGGTCAAGTACCATGAACCAGAATATTGGAAATTCGGAGAGGAGGGAAATAAATATTTCCGGCATGCAACAGGTCAAATATATGCACTTTCCAAAGATTTGGCAACCTACATTTCAGTTAATAGGCACATACTTCACCGATATGCGAATGAAGATGTTTCTTTGGGTTCTTGGTTTATTGGTCTTGATGTCCAGCACATTGATGAGCGAAGCCTTTGCTGTGGGACTCCTCCAGATTGCGAGTGGAAAGCTCAAGCCGGGAATCCCTGTGCTGCATCATTCGATTGGAGCTGCAGCGGCATATGCAAATCAGTGGAGAGAATGGAGGAGGTGCACCAGAGATGTGGAGAGGGTGATGATGCGATTTGGCACACCAGTTTCTAA

Protein Analysis

406

Amino Acids

45.52

Weight (kDa)

6.39

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 11 - 207 1.7e-46 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 5 cut(s) 230, 297, 532, 769, 1131
AclWI GGATC 2 cut(s) 122, 361
AcsI RAATTY 1 cut(s) 866
AcuI CTGAAG 2 cut(s) 170, 421
AfaI GTAC 2 cut(s) 790, 845
AfiI CCNNNNNNNGG 1 cut(s) 634
AgsI TTSAA 1 cut(s) 462
AjnI CCWGG 3 cut(s) 373, 481, 822
AluBI AGCT 8 cut(s) 81, 280, 313, 323, 329, 683, 1085, 1125
AluI AGCT 8 cut(s) 81, 280, 313, 323, 329, 683, 1085, 1125
Alw21I GWGCWC 2 cut(s) 735, 1170
Alw26I GTCTC 4 cut(s) 49, 228, 256, 503
Alw44I GTGCAC 2 cut(s) 731, 1166
AlwI GGATC 2 cut(s) 122, 361
AlwNI CAGNNNCTG 1 cut(s) 683
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 1 cut(s) 765
ApaLI GTGCAC 2 cut(s) 731, 1166
ApeKI GCWGC 9 cut(s) 119, 310, 317, 320, 441, 680, 1106, 1125, 1128
ApoI RAATTY 1 cut(s) 866
Asp700I GAANNNNTTC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 3 cut(s) 574, 766, 815
AsuC2I CCSGG 1 cut(s) 1093
AsuHPI GGTGA 3 cut(s) 500, 962, 1199
AsuNHI GCTAGC 1 cut(s) 313
AvaII GGWCC 2 cut(s) 574, 815
BaeGI GKGCMC 2 cut(s) 735, 1170
Bbv12I GWGCWC 2 cut(s) 735, 1170
BbvI GCAGC 9 cut(s) 106, 322, 329, 332, 453, 692, 1093, 1112, 1140
BccI CCATC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 1032, 1066
BciT130I CCWGG 3 cut(s) 375, 483, 824
BciVI GTATCC 1 cut(s) 632
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 1093
BcoDI GTCTC 4 cut(s) 49, 228, 256, 503
BfaI CTAG 3 cut(s) 281, 314, 324
BfmI CTRYAG 1 cut(s) 1126
BfoI RGCGCY 1 cut(s) 400
BfuI GTATCC 1 cut(s) 632
Bme1390I CCNGG 4 cut(s) 375, 483, 824, 1093
Bme18I GGWCC 2 cut(s) 574, 815
BmgT120I GGNCC 3 cut(s) 574, 766, 815
BmrFI CCNGG 4 cut(s) 375, 483, 824, 1093
BmsI GCATC 7 cut(s) 468, 563, 577, 688, 791, 1118, 1183
BmtI GCTAGC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpmI CTGGAG 3 cut(s) 182, 504, 1050
BpuEI CTTGAG 2 cut(s) 231, 1071
BpuMI CCSGG 1 cut(s) 1093
Bsa29I ATCGAT 1 cut(s) 176
BsaAI YACGTR 2 cut(s) 736, 792
BsaWI WCCGGW 2 cut(s) 130, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse1I ACTGG 3 cut(s) 165, 565, 1209
Bse3DI GCAATG 2 cut(s) 43, 72
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 3 cut(s) 375, 483, 824
BseCI ATCGAT 1 cut(s) 176
BseGI GGATG 5 cut(s) 148, 483, 554, 703, 806
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMI GCAATG 2 cut(s) 43, 72
BseNI ACTGG 3 cut(s) 165, 565, 1209
BseRI GAGGAG 4 cut(s) 407, 890, 1053, 1175
BseSI GKGCMC 2 cut(s) 735, 1170
BseXI GCAGC 9 cut(s) 106, 322, 329, 332, 453, 692, 1093, 1112, 1140
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 735, 1170
BsiSI CCGG 4 cut(s) 131, 359, 895, 1092
BsiWI CGTACG 1 cut(s) 788
BslFI GGGAC 1 cut(s) 1072
BslI CCNNNNNNNGG 1 cut(s) 634
BsmAI GTCTC 4 cut(s) 49, 228, 256, 503
BsmFI GGGAC 1 cut(s) 1072
BsnI GGCC 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 735, 1170
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 4 cut(s) 127, 270, 353, 776
BspACI CCGC 5 cut(s) 230, 297, 532, 769, 1131
BspANI GGCC 1 cut(s) 767
BspDI ATCGAT 1 cut(s) 176
BspEI TCCGGA 1 cut(s) 130
BspHI TCATGA 1 cut(s) 426
BspMAI CTGCAG 1 cut(s) 1130
BspOI GCTAGC 1 cut(s) 317
BspPI GGATC 2 cut(s) 122, 361
BsrDI GCAATG 2 cut(s) 43, 72
BsrI ACTGG 3 cut(s) 165, 565, 1209
BssMI GATC 4 cut(s) 127, 270, 353, 776
Bst2UI CCWGG 3 cut(s) 375, 483, 824
Bst4CI ACNGT 2 cut(s) 551, 578
Bst6I CTCTTC 3 cut(s) 71, 141, 189
BstBAI YACGTR 2 cut(s) 736, 792
BstC8I GCNNGC 4 cut(s) 79, 315, 769, 900
BstF5I GGATG 5 cut(s) 148, 483, 554, 703, 806
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 4 cut(s) 130, 273, 356, 779
BstMAI GTCTC 4 cut(s) 49, 228, 256, 503
BstMBI GATC 4 cut(s) 127, 270, 353, 776
BstMWI GCNNNNNNNGC 5 cut(s) 78, 326, 587, 1131, 1137
BstNI CCWGG 3 cut(s) 375, 483, 824
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 4 cut(s) 373, 481, 822, 1091
BstSFI CTRYAG 1 cut(s) 1126
BstSLI GKGCMC 2 cut(s) 735, 1170
BstSNI TACGTA 1 cut(s) 792
BstV1I GCAGC 9 cut(s) 106, 322, 329, 332, 453, 692, 1093, 1112, 1140
BstX2I RGATCY 1 cut(s) 353
BstXI CCANNNNNNTGG 3 cut(s) 861, 934, 1178
BstYI RGATCY 1 cut(s) 353
Bsu15I ATCGAT 1 cut(s) 176
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 1 cut(s) 767
BsuTUI ATCGAT 1 cut(s) 176
BtsCI GGATG 5 cut(s) 148, 483, 554, 703, 806
BtsIMutI CAGTG 5 cut(s) 158, 219, 556, 558, 1152
Cac8I GCNNGC 4 cut(s) 79, 315, 769, 900
CaiI CAGNNNCTG 1 cut(s) 683
CciI TCATGA 1 cut(s) 426
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 3 cut(s) 574, 766, 815
ClaI ATCGAT 1 cut(s) 176
Csp6I GTAC 2 cut(s) 789, 844
CviAII CATG 8 cut(s) 263, 418, 427, 474, 644, 805, 848, 899
CviQI GTAC 2 cut(s) 789, 844
DpnI GATC 4 cut(s) 129, 272, 355, 778
DpnII GATC 4 cut(s) 127, 270, 353, 776
Eam1104I CTCTTC 3 cut(s) 71, 141, 189
EarI CTCTTC 3 cut(s) 71, 141, 189
Eco105I TACGTA 1 cut(s) 792
Eco47I GGWCC 2 cut(s) 574, 815
Eco57I CTGAAG 2 cut(s) 170, 421
EcoRII CCWGG 3 cut(s) 373, 481, 822
EcoT22I ATGCAT 1 cut(s) 806
FaeI CATG 8 cut(s) 266, 421, 430, 477, 647, 808, 851, 902
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 1072
FatI CATG 8 cut(s) 262, 417, 426, 473, 643, 804, 847, 898
FauI CCCGC 2 cut(s) 223, 776
FauNDI CATATG 1 cut(s) 1136
FbaI TGATCA 1 cut(s) 270
FokI GGATG 5 cut(s) 155, 490, 541, 710, 813
FspBI CTAG 3 cut(s) 281, 314, 324
GlaI GCGC 1 cut(s) 398
GsuI CTGGAG 3 cut(s) 182, 504, 1050
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 1 cut(s) 767
HapII CCGG 4 cut(s) 131, 359, 895, 1092
HhaI GCGC 1 cut(s) 399
Hin1II CATG 8 cut(s) 266, 421, 430, 477, 647, 808, 851, 902
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 6 cut(s) 42, 383, 423, 458, 1060, 1096
HpaII CCGG 4 cut(s) 131, 359, 895, 1092
HphI GGTGA 3 cut(s) 500, 962, 1199
Hpy166II GTNNAC 4 cut(s) 106, 366, 733, 1168
Hpy188I TCNGA 3 cut(s) 340, 620, 872
Hpy188III TCNNGA 7 cut(s) 46, 131, 274, 427, 813, 1019, 1067
Hpy8I GTNNAC 4 cut(s) 106, 366, 733, 1168
HpyAV CCTTC 5 cut(s) 205, 344, 445, 447, 511
HpyCH4III ACNGT 2 cut(s) 551, 578
HpyCH4IV ACGT 2 cut(s) 735, 791
HpyF10VI GCNNNNNNNGC 5 cut(s) 78, 326, 587, 1131, 1137
HpySE526I ACGT 2 cut(s) 735, 791
Hsp92II CATG 8 cut(s) 266, 421, 430, 477, 647, 808, 851, 902
HspAI GCGC 1 cut(s) 397
Kpn2I TCCGGA 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 4 cut(s) 127, 270, 353, 776
LmnI GCTCC 2 cut(s) 394, 1122
Lsp1109I GCAGC 9 cut(s) 106, 322, 329, 332, 453, 692, 1093, 1112, 1140
LweI GCATC 7 cut(s) 468, 563, 577, 688, 791, 1118, 1183
MaeI CTAG 3 cut(s) 281, 314, 324
MaeII ACGT 2 cut(s) 735, 791
MaeIII GTNAC 1 cut(s) 488
MalI GATC 4 cut(s) 129, 272, 355, 778
MboI GATC 4 cut(s) 127, 270, 353, 776
MboII GAAGA 8 cut(s) 16, 58, 76, 158, 176, 220, 605, 998
MfeI CAATTG 1 cut(s) 199
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 735, 1170
MluCI AATT 4 cut(s) 199, 522, 647, 866
MlyI GAGTC 2 cut(s) 51, 1054
MmeI TCCRAC 1 cut(s) 643
Mph1103I ATGCAT 1 cut(s) 806
MroI TCCGGA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 3 cut(s) 497, 714, 954
MslI CAYNNNNRTG 2 cut(s) 975, 1035
MspA1I CMGCKG 2 cut(s) 683, 1131
MspI CCGG 4 cut(s) 131, 359, 895, 1092
MspR9I CCNGG 4 cut(s) 375, 483, 824, 1093
MunI CAATTG 1 cut(s) 199
MvaI CCWGG 3 cut(s) 375, 483, 824
MwoI GCNNNNNNNGC 5 cut(s) 78, 326, 587, 1131, 1137
NciI CCSGG 1 cut(s) 1093
NdeI CATATG 1 cut(s) 1136
NdeII GATC 4 cut(s) 127, 270, 353, 776
NheI GCTAGC 1 cut(s) 313
NlaIII CATG 8 cut(s) 266, 421, 430, 477, 647, 808, 851, 902
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 806
NspI RCATGY 1 cut(s) 902
PaeI GCATGC 1 cut(s) 902
PagI TCATGA 1 cut(s) 426
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 4 cut(s) 383, 423, 458, 1096
Pfl23II CGTACG 1 cut(s) 788
PleI GAGTC 2 cut(s) 50, 1054
PpsI GAGTC 2 cut(s) 50, 1054
Ppu21I YACGTR 2 cut(s) 736, 792
PsiI TTATAA 1 cut(s) 527
Psp6I CCWGG 3 cut(s) 373, 481, 822
PspGI CCWGG 3 cut(s) 373, 481, 822
PspLI CGTACG 1 cut(s) 788
PspPI GGNCC 3 cut(s) 574, 766, 815
PsrI GAACNNNNNNTAC 2 cut(s) 739, 771
PstI CTGCAG 1 cut(s) 1130
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 353
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 2 cut(s) 790, 845
RsaNI GTAC 2 cut(s) 789, 844
RseI CAYNNNNRTG 2 cut(s) 975, 1035
SaqAI TTAA 3 cut(s) 497, 714, 954
Sau3AI GATC 4 cut(s) 127, 270, 353, 776
Sau96I GGNCC 3 cut(s) 574, 766, 815
SchI GAGTC 2 cut(s) 51, 1054
ScrFI CCNGG 4 cut(s) 375, 483, 824, 1093
SduI GDGCHC 2 cut(s) 735, 1170
SfaNI GCATC 7 cut(s) 468, 563, 577, 688, 791, 1118, 1183
SfcI CTRYAG 1 cut(s) 1126
SinI GGWCC 2 cut(s) 574, 815
SmiMI CAYNNNNRTG 2 cut(s) 975, 1035
SmlI CTYRAG 2 cut(s) 246, 1086
SmoI CTYRAG 2 cut(s) 246, 1086
SnaBI TACGTA 1 cut(s) 792
SphI GCATGC 1 cut(s) 902
Sse9I AATT 4 cut(s) 199, 522, 647, 866
SsiI CCGC 5 cut(s) 230, 297, 532, 769, 1131
SspI AATATT 2 cut(s) 860, 890
SspMI CTAG 3 cut(s) 281, 314, 324
StyD4I CCNGG 4 cut(s) 373, 481, 822, 1091
TaaI ACNGT 2 cut(s) 551, 578
TaiI ACGT 2 cut(s) 738, 794
TaqI TCGA 4 cut(s) 47, 176, 390, 1116
TasI AATT 4 cut(s) 199, 522, 647, 866
TauI GCSGC 1 cut(s) 1134
TfiI GAWTC 4 cut(s) 383, 423, 458, 1096
Tru1I TTAA 3 cut(s) 497, 714, 954
Tru9I TTAA 3 cut(s) 497, 714, 954
TscAI CASTG 5 cut(s) 165, 226, 556, 565, 1152
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 9 cut(s) 119, 310, 317, 320, 441, 680, 1106, 1125, 1128
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 8 cut(s) 17, 144, 159, 363, 660, 821, 864, 999
TspRI CASTG 5 cut(s) 165, 226, 556, 565, 1152
VneI GTGCAC 2 cut(s) 731, 1166
VpaK11BI GGWCC 2 cut(s) 574, 815
XapI RAATTY 1 cut(s) 866
XceI RCATGY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 1074
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 3 cut(s) 281, 314, 324
Zsp2I ATGCAT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.