Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Reverse (-)

6681295 .. 6685593

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG088500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAGATGGGTCTGAGCAGACCTCACAAGGTCGGCAATGGAGTCTCCACCAGATGGGTTTCTCTGTTTTGCATTGCCAGTTTCTTCTTGGGTGTTCTTGTTGTCAACAGGTTTTGGGCTGCCATCGATGCAGATGAAATTGATGAAGAGGCTTCATCACTGGAGAAACATCAATCAAGATCTCTTCACCCCGTTGTAAATTGTGAGAAGAAGGAAGACACTGACGAGGCAGGCGACATCTTTTCTCAAGTCTCGCAAACACATGATGTGATCAGGAAGCTAGACAAGACAATATCATCATTAGAGGTGCAGCTTGCAGCAGCTAGAGCTTCCAAATCTGACAATGATGAAGGATCTCCAGGGGTTACAAAAACAGGAAGCGAATCATTCAAGGAGCGCCAAAAGGTTTTCTTTGTCATGGGAATCATGACTGCCTTCAGCAGCAGAAAGCGAAGGGACTCAATCAGGGAAACATGGATGCCTGGAGGTGACGAGTTAAAGAAGTTAGAGACAGAGAAGGGAATTATAATGCGGTTTGTTATTGGACACAGTGCATCCTCTGGTGGTGTTTTGGATCGTGCCATTGATGCAGAAGATGAGAAACATAAGGATTTTTTCCGACTGAACCATATAGAGGGATACCACGAATTGTCCTCAAAAACCCAAACATATTTTACAGCAGCTGTCAGCAAGTGGGATGCTGACTTTTATATTAAAGTTGATGATGATGTGCACATAAATCTTGGTATGGTTGGTTCTACTTTGGCCCGCCATAGATCAAAGCCTCGTACGTATATTGGATGCATGAAGTCTGGACCTGTCCTGGCACATCAGGGGGTCAAGTACCATGAACCAGAATATTGGAAATTTGGAGAGGAGGGAAATAAATATTTCCGGCATGCAACAGGTCAAATATATGCAATTTCCAAAGATTTGGCAACCTACATTTCAGTGCATAGGCACATACTTCACAGATATGCAAATGAAGATGTTTCTCTGGGTTCTTGGTTTATTGGTCTTGATGTTCAGCACATCGACGAGCGAAGCCTTTGCTGTGGGACTCCTCCAGGTAAGTTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

360

Amino Acids

40.55

Weight (kDa)

6.79

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	16 - 111	4.9e-24	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	150 - 346	1.6e-46	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	54
AciI	CCGC	2 cut(s)	532, 769
AclWI	GGATC	2 cut(s)	361, 582
AcsI	RAATTY	1 cut(s)	866
AcuI	CTGAAG	1 cut(s)	421
AfaI	GTAC	2 cut(s)	790, 845
AfiI	CCNNNNNNNGG	2 cut(s)	54, 634
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	4 cut(s)	358, 481, 822, 1066
AluBI	AGCT	5 cut(s)	280, 313, 323, 329, 683
AluI	AGCT	5 cut(s)	280, 313, 323, 329, 683
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	3 cut(s)	49, 256, 503
Alw44I	GTGCAC	1 cut(s)	731
AlwI	GGATC	2 cut(s)	361, 582
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	1 cut(s)	765
ApaLI	GTGCAC	1 cut(s)	731
ApeKI	GCWGC	6 cut(s)	119, 310, 317, 320, 441, 680
ApoI	RAATTY	1 cut(s)	866
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	766, 815
AsuHPI	GGTGA	2 cut(s)	179, 500
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	6 cut(s)	106, 322, 329, 332, 453, 692
BccI	CCATC	2 cut(s)	48, 131
BcgI	CGANNNNNNTGC	2 cut(s)	1032, 1066
BciT130I	CCWGG	4 cut(s)	360, 483, 824, 1068
BciVI	GTATCC	1 cut(s)	632
BclI	TGATCA	1 cut(s)	270
BcoDI	GTCTC	3 cut(s)	49, 256, 503
BfaI	CTAG	2 cut(s)	281, 324
BfoI	RGCGCY	1 cut(s)	400
BfuI	GTATCC	1 cut(s)	632
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	6 cut(s)	120, 311, 318, 321, 442, 681
BlsI	GCNGC	6 cut(s)	121, 312, 319, 322, 443, 682
Bme1390I	CCNGG	4 cut(s)	360, 483, 824, 1068
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	2 cut(s)	766, 815
BmrFI	CCNGG	4 cut(s)	360, 483, 824, 1068
BmsI	GCATC	6 cut(s)	118, 468, 563, 577, 688, 791
BpiI	GAAGAC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	4 cut(s)	182, 342, 504, 1050
BpuEI	CTTGAG	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	792
BsaJI	CCNNGG	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 634
Bse1I	ACTGG	2 cut(s)	78, 165
Bse3DI	GCAATG	2 cut(s)	43, 72
BseBI	CCWGG	4 cut(s)	360, 483, 824, 1068
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	4 cut(s)	483, 554, 703, 806
BseLI	CCNNNNNNNGG	2 cut(s)	54, 634
BseMI	GCAATG	2 cut(s)	43, 72
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	78, 165
BseRI	GAGGAG	2 cut(s)	890, 1053
BseSI	GKGCMC	1 cut(s)	735
BseXI	GCAGC	6 cut(s)	106, 322, 329, 332, 453, 692
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	767
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	895
BsiWI	CGTACG	1 cut(s)	788
BslFI	GGGAC	2 cut(s)	470, 1072
BslI	CCNNNNNNNGG	2 cut(s)	54, 634
BsmAI	GTCTC	3 cut(s)	49, 256, 503
BsmFI	GGGAC	2 cut(s)	470, 1072
BsnI	GGCC	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	5 cut(s)	179, 270, 353, 574, 776
BspACI	CCGC	2 cut(s)	532, 769
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	426
BspPI	GGATC	2 cut(s)	361, 582
BsrDI	GCAATG	2 cut(s)	43, 72
BsrI	ACTGG	2 cut(s)	78, 165
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	5 cut(s)	179, 270, 353, 574, 776
Bst2UI	CCWGG	4 cut(s)	360, 483, 824, 1068
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	2 cut(s)	141, 189
BstBAI	YACGTR	1 cut(s)	792
BstC8I	GCNNGC	4 cut(s)	232, 315, 769, 900
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	4 cut(s)	483, 554, 703, 806
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	5 cut(s)	182, 273, 356, 577, 779
BstMAI	GTCTC	3 cut(s)	49, 256, 503
BstMBI	GATC	5 cut(s)	179, 270, 353, 574, 776
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 326, 587
BstNI	CCWGG	4 cut(s)	360, 483, 824, 1068
BstNSI	RCATGY	1 cut(s)	902
BstSCI	CCNGG	4 cut(s)	358, 481, 822, 1066
BstSLI	GKGCMC	1 cut(s)	735
BstSNI	TACGTA	1 cut(s)	792
BstV1I	GCAGC	6 cut(s)	106, 322, 329, 332, 453, 692
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	179, 353
BstXI	CCANNNNNNTGG	2 cut(s)	861, 934
BstYI	RGATCY	2 cut(s)	179, 353
Bsu15I	ATCGAT	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	767
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	483, 554, 703, 806
BtsIMutI	CAGTG	4 cut(s)	158, 219, 556, 957
Cac8I	GCNNGC	4 cut(s)	232, 315, 769, 900
CaiI	CAGNNNCTG	1 cut(s)	683
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	766, 815
ClaI	ATCGAT	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	789, 844
CviAII	CATG	7 cut(s)	263, 418, 427, 474, 805, 848, 899
CviQI	GTAC	2 cut(s)	789, 844
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	5 cut(s)	181, 272, 355, 576, 778
DpnII	GATC	5 cut(s)	179, 270, 353, 574, 776
Eam1104I	CTCTTC	2 cut(s)	141, 189
EarI	CTCTTC	2 cut(s)	141, 189
Eco105I	TACGTA	1 cut(s)	792
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	421
EcoRII	CCWGG	4 cut(s)	358, 481, 822, 1066
EcoT22I	ATGCAT	1 cut(s)	806
FaeI	CATG	7 cut(s)	266, 421, 430, 477, 808, 851, 902
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	2 cut(s)	470, 1072
FatI	CATG	7 cut(s)	262, 417, 426, 473, 804, 847, 898
FauI	CCCGC	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	6 cut(s)	120, 311, 318, 321, 442, 681
FokI	GGATG	4 cut(s)	490, 541, 710, 813
Fsp4HI	GCNGC	6 cut(s)	120, 311, 318, 321, 442, 681
FspBI	CTAG	2 cut(s)	281, 324
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	6 cut(s)	120, 311, 318, 321, 442, 681
GsuI	CTGGAG	4 cut(s)	182, 342, 504, 1050
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	1 cut(s)	895
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	7 cut(s)	266, 421, 430, 477, 808, 851, 902
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	5 cut(s)	42, 383, 423, 458, 1060
HpaII	CCGG	1 cut(s)	895
HphI	GGTGA	2 cut(s)	179, 500
Hpy166II	GTNNAC	2 cut(s)	106, 733
Hpy188I	TCNGA	3 cut(s)	15, 340, 620
Hpy188III	TCNNGA	5 cut(s)	177, 274, 427, 813, 1019
Hpy8I	GTNNAC	2 cut(s)	106, 733
Hpy99I	CGWCG	1 cut(s)	1040
HpyAV	CCTTC	5 cut(s)	205, 344, 445, 447, 511
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 326, 587
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	791
Hsp92II	CATG	7 cut(s)	266, 421, 430, 477, 808, 851, 902
HspAI	GCGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	5 cut(s)	179, 270, 353, 574, 776
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	6 cut(s)	106, 322, 329, 332, 453, 692
LweI	GCATC	6 cut(s)	118, 468, 563, 577, 688, 791
MaeI	CTAG	2 cut(s)	281, 324
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	3 cut(s)	364, 488, 1074
MalI	GATC	5 cut(s)	181, 272, 355, 576, 778
MboI	GATC	5 cut(s)	179, 270, 353, 574, 776
MboII	GAAGA	8 cut(s)	16, 76, 158, 176, 220, 227, 605, 998
MflI	RGATCY	2 cut(s)	179, 353
MhlI	GDGCHC	1 cut(s)	735
MluCI	AATT	6 cut(s)	138, 199, 522, 647, 866, 921
MlyI	GAGTC	3 cut(s)	51, 452, 1054
MmeI	TCCRAC	1 cut(s)	643
Mph1103I	ATGCAT	1 cut(s)	806
MseI	TTAA	2 cut(s)	497, 714
MslI	CAYNNNNRTG	2 cut(s)	950, 975
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	895
MspR9I	CCNGG	4 cut(s)	360, 483, 824, 1068
MvaI	CCWGG	4 cut(s)	360, 483, 824, 1068
MwoI	GCNNNNNNNGC	3 cut(s)	128, 326, 587
NdeII	GATC	5 cut(s)	179, 270, 353, 574, 776
NlaIII	CATG	7 cut(s)	266, 421, 430, 477, 808, 851, 902
NmuCI	GTSAC	1 cut(s)	488
NsiI	ATGCAT	1 cut(s)	806
NspI	RCATGY	1 cut(s)	902
PaeI	GCATGC	1 cut(s)	902
PagI	TCATGA	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	383, 423
Pfl23II	CGTACG	1 cut(s)	788
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	6 cut(s)	121, 312, 319, 322, 443, 682
PleI	GAGTC	3 cut(s)	50, 452, 1054
PpsI	GAGTC	3 cut(s)	50, 452, 1054
Ppu21I	YACGTR	1 cut(s)	792
PsiI	TTATAA	1 cut(s)	527
Psp6I	CCWGG	4 cut(s)	358, 481, 822, 1066
PspGI	CCWGG	4 cut(s)	358, 481, 822, 1066
PspLI	CGTACG	1 cut(s)	788
PspPI	GGNCC	2 cut(s)	766, 815
PsrI	GAACNNNNNNTAC	2 cut(s)	739, 771
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	179, 353
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	2 cut(s)	790, 845
RsaNI	GTAC	2 cut(s)	789, 844
RseI	CAYNNNNRTG	2 cut(s)	950, 975
SaqAI	TTAA	2 cut(s)	497, 714
SatI	GCNGC	6 cut(s)	120, 311, 318, 321, 442, 681
Sau3AI	GATC	5 cut(s)	179, 270, 353, 574, 776
Sau96I	GGNCC	2 cut(s)	766, 815
SchI	GAGTC	3 cut(s)	51, 452, 1054
ScrFI	CCNGG	4 cut(s)	360, 483, 824, 1068
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	6 cut(s)	118, 468, 563, 577, 688, 791
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	950, 975
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SnaBI	TACGTA	1 cut(s)	792
SphI	GCATGC	1 cut(s)	902
Sse9I	AATT	6 cut(s)	138, 199, 522, 647, 866, 921
SsiI	CCGC	2 cut(s)	532, 769
SspI	AATATT	2 cut(s)	860, 890
SspMI	CTAG	2 cut(s)	281, 324
StyD4I	CCNGG	4 cut(s)	358, 481, 822, 1066
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	2 cut(s)	126, 1035
TasI	AATT	6 cut(s)	138, 199, 522, 647, 866, 921
TfiI	GAWTC	2 cut(s)	383, 423
Tru1I	TTAA	2 cut(s)	497, 714
Tru9I	TTAA	2 cut(s)	497, 714
TscAI	CASTG	4 cut(s)	165, 226, 556, 957
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	6 cut(s)	119, 310, 317, 320, 441, 680
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	8 cut(s)	17, 144, 150, 159, 363, 821, 864, 999
TspRI	CASTG	4 cut(s)	165, 226, 556, 957
Van91I	CCANNNNNTGG	1 cut(s)	54
VneI	GTGCAC	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	866
XceI	RCATGY	1 cut(s)	902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XspI	CTAG	2 cut(s)	281, 324
Zsp2I	ATGCAT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.