Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041260.1

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Forward (+)

196 .. 3801

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgggtctgagcagacctcacaaggtcggcaatggagtctccaccagatgggtttctctgttttgcattgccagtttcttcttgggtgttcttgttgtcaacaggttttgggctgccatcgatgcagatgaaattgatgaagaggcttcatcactggagaaacatcaatcaagatctctttaccccgttgtaaattgtgagaagaaggaagacactgacaaggcaggcgacatcttttctcaagtctcgcaaacacatgatgtgatcaggaagctagacaagacaatatcctcattagaggtgcagctagcagcagctagagcttccaaatctgacaatgatgaaggatctccagtggttacaaaaacaggaagcgaatcattcaaggagcgccaaaaggttttctttgtcatgggaatcatgactgccttcagcagcagaaagcgaagggactcaatcagggaaacatggatgcctggaggtgacgagttaaagaagttagagacagagaagggaattataatgcggtttgttattggacacagtgcatcctctggtggtgttttggatcgtgccattgatgcagaagatgagaaacataaggattttttccgactgaaccatatagagggataccacgaattgtcctcaaaaacccaaacatattttacagcagctgtcagcaagtgggatgctgacttttatattaaagttgatgatgatgtgcacataaatcttggtatggttggttctactttggcccgccatagatcaaagcctcgtacgtatattggatgcatgaagtctggacctgtcctggcacatcagggggtcaagtaccatgaaccagaatattggaaatttggagaggagggaaataaatatttccggcatgcaacaggtcaaatatatgcaatttccaaagatttggcaacctacatttcagtgcataggcacatacttcacagatatgcaaatgaagatgtttctctgggttcttggtttattggtcttgatgttcagcacatcgacgagcgaagcctttgctgtgggactcctccagattgcgagtggaaagctcaagccgggaacccttgtgctgcatcattcgattggagctgcagtggcatatgcaaatcggtggagagaatggaagaggtgcaccaaagatgcggagaagaaaaattggatgaacgcaccatctgccccatttttgctcattcatgcccgggacagtttggcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

415

Amino Acids

46.72

Weight (kDa)

6.32

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	48
AciI	CCGC	3 cut(s)	526, 763, 1173
AclWI	GGATC	2 cut(s)	355, 576
AcsI	RAATTY	1 cut(s)	860
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	2 cut(s)	784, 839
AfiI	CCNNNNNNNGG	2 cut(s)	48, 628
AgsI	TTSAA	1 cut(s)	385
AjnI	CCWGG	2 cut(s)	475, 816
AluBI	AGCT	7 cut(s)	274, 307, 317, 323, 677, 1079, 1119
AluI	AGCT	7 cut(s)	274, 307, 317, 323, 677, 1079, 1119
Alw21I	GWGCWC	2 cut(s)	729, 1164
Alw26I	GTCTC	3 cut(s)	43, 250, 497
Alw44I	GTGCAC	2 cut(s)	725, 1160
AlwI	GGATC	2 cut(s)	355, 576
AlwNI	CAGNNNCTG	1 cut(s)	677
Ama87I	CYCGRG	1 cut(s)	1228
AoxI	GGCC	1 cut(s)	759
ApaLI	GTGCAC	2 cut(s)	725, 1160
ApeKI	GCWGC	8 cut(s)	113, 304, 311, 314, 435, 674, 1100, 1119
ApoI	RAATTY	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	760, 809
AsuC2I	CCSGG	3 cut(s)	1087, 1229, 1230
AsuHPI	GGTGA	1 cut(s)	494
AsuNHI	GCTAGC	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	1228
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	2 cut(s)	729, 1164
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	2 cut(s)	729, 1164
BbvI	GCAGC	8 cut(s)	100, 316, 323, 326, 447, 686, 1087, 1106
BccI	CCATC	3 cut(s)	42, 125, 1208
BcgI	CGANNNNNNTGC	2 cut(s)	1026, 1060
BciT130I	CCWGG	2 cut(s)	477, 818
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	3 cut(s)	1087, 1229, 1230
BcoDI	GTCTC	3 cut(s)	43, 250, 497
BfaI	CTAG	3 cut(s)	275, 308, 318
BfmI	CTRYAG	1 cut(s)	1120
BfoI	RGCGCY	1 cut(s)	394
BfuI	GTATCC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	173
BisI	GCNGC	8 cut(s)	114, 305, 312, 315, 436, 675, 1101, 1120
BlsI	GCNGC	8 cut(s)	115, 306, 313, 316, 437, 676, 1102, 1121
Bme1390I	CCNGG	5 cut(s)	477, 818, 1087, 1229, 1230
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	1228
BmgT120I	GGNCC	2 cut(s)	760, 809
BmiI	GGNNCC	1 cut(s)	1091
BmrFI	CCNGG	5 cut(s)	477, 818, 1087, 1229, 1230
BmsI	GCATC	8 cut(s)	112, 462, 557, 571, 682, 785, 1112, 1160
BmtI	GCTAGC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	4 cut(s)	176, 336, 498, 1044
BpuEI	CTTGAG	2 cut(s)	225, 1065
BpuMI	CCSGG	3 cut(s)	1087, 1229, 1230
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	1228
BsaXI	ACNNNNNCTCC	2 cut(s)	1108, 1138
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 628
Bse1I	ACTGG	3 cut(s)	72, 159, 353
Bse3DI	GCAATG	2 cut(s)	37, 66
BseBI	CCWGG	2 cut(s)	477, 818
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	1228
BseGI	GGATG	5 cut(s)	477, 548, 697, 800, 1195
BseLI	CCNNNNNNNGG	2 cut(s)	48, 628
BseMI	GCAATG	2 cut(s)	37, 66
BseNI	ACTGG	3 cut(s)	72, 159, 353
BseRI	GAGGAG	2 cut(s)	884, 1047
BseSI	GKGCMC	2 cut(s)	729, 1164
BseXI	GCAGC	8 cut(s)	100, 316, 323, 326, 447, 686, 1087, 1106
BsgI	GTGCAG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	729, 1164
BsiHKCI	CYCGRG	1 cut(s)	1228
BsiSI	CCGG	3 cut(s)	889, 1086, 1229
BsiWI	CGTACG	1 cut(s)	782
BslFI	GGGAC	2 cut(s)	464, 1066
BslI	CCNNNNNNNGG	2 cut(s)	48, 628
BsmAI	GTCTC	3 cut(s)	43, 250, 497
BsmFI	GGGAC	2 cut(s)	464, 1066
BsnI	GGCC	1 cut(s)	761
BsoBI	CYCGRG	1 cut(s)	1228
Bsp1286I	GDGCHC	2 cut(s)	729, 1164
Bsp143I	GATC	5 cut(s)	173, 264, 347, 568, 770
BspACI	CCGC	3 cut(s)	526, 763, 1173
BspANI	GGCC	1 cut(s)	761
BspDI	ATCGAT	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	1091
BspMAI	CTGCAG	1 cut(s)	1124
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	355, 576
BsrDI	GCAATG	2 cut(s)	37, 66
BsrI	ACTGG	3 cut(s)	72, 159, 353
BssECI	CCNNGG	1 cut(s)	1228
BssMI	GATC	5 cut(s)	173, 264, 347, 568, 770
Bst2UI	CCWGG	2 cut(s)	477, 818
Bst4CI	ACNGT	2 cut(s)	545, 1236
Bst6I	CTCTTC	2 cut(s)	135, 1149
BstAPI	GCANNNNNTGC	1 cut(s)	1203
BstBAI	YACGTR	1 cut(s)	786
BstC8I	GCNNGC	4 cut(s)	226, 309, 763, 894
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	5 cut(s)	477, 548, 697, 800, 1195
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	5 cut(s)	176, 267, 350, 571, 773
BstMAI	GTCTC	3 cut(s)	43, 250, 497
BstMBI	GATC	5 cut(s)	173, 264, 347, 568, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 320, 581, 1125, 1203
BstNI	CCWGG	2 cut(s)	477, 818
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	5 cut(s)	475, 816, 1085, 1227, 1228
BstSFI	CTRYAG	1 cut(s)	1120
BstSLI	GKGCMC	2 cut(s)	729, 1164
BstSNI	TACGTA	1 cut(s)	786
BstV1I	GCAGC	8 cut(s)	100, 316, 323, 326, 447, 686, 1087, 1106
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	173, 347
BstXI	CCANNNNNNTGG	2 cut(s)	855, 928
BstYI	RGATCY	2 cut(s)	173, 347
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	1 cut(s)	761
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	477, 548, 697, 800, 1195
BtsI	GCAGTG	1 cut(s)	1129
BtsIMutI	CAGTG	6 cut(s)	152, 213, 360, 550, 951, 1129
Cac8I	GCNNGC	4 cut(s)	226, 309, 763, 894
CaiI	CAGNNNCTG	1 cut(s)	677
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	760, 809
Cfr9I	CCCGGG	1 cut(s)	1228
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	783, 838
CviAII	CATG	8 cut(s)	257, 412, 421, 468, 799, 842, 893, 1224
CviQI	GTAC	2 cut(s)	783, 838
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	5 cut(s)	175, 266, 349, 570, 772
DpnII	GATC	5 cut(s)	173, 264, 347, 568, 770
Eam1104I	CTCTTC	2 cut(s)	135, 1149
EarI	CTCTTC	2 cut(s)	135, 1149
Eco105I	TACGTA	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	1228
EcoRII	CCWGG	2 cut(s)	475, 816
EcoT22I	ATGCAT	1 cut(s)	800
FaeI	CATG	8 cut(s)	260, 415, 424, 471, 802, 845, 896, 1227
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	2 cut(s)	464, 1066
FatI	CATG	8 cut(s)	256, 411, 420, 467, 798, 841, 892, 1223
FauI	CCCGC	1 cut(s)	770
FauNDI	CATATG	2 cut(s)	1130, 1244
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	8 cut(s)	114, 305, 312, 315, 436, 675, 1101, 1120
FokI	GGATG	5 cut(s)	484, 535, 704, 807, 1202
Fsp4HI	GCNGC	8 cut(s)	114, 305, 312, 315, 436, 675, 1101, 1120
FspBI	CTAG	3 cut(s)	275, 308, 318
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	8 cut(s)	114, 305, 312, 315, 436, 675, 1101, 1120
GsuI	CTGGAG	4 cut(s)	176, 336, 498, 1044
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	3 cut(s)	889, 1086, 1229
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	8 cut(s)	260, 415, 424, 471, 802, 845, 896, 1227
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	5 cut(s)	36, 377, 417, 452, 1054
HpaII	CCGG	3 cut(s)	889, 1086, 1229
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	3 cut(s)	100, 727, 1162
Hpy188I	TCNGA	3 cut(s)	9, 334, 614
Hpy188III	TCNNGA	6 cut(s)	171, 268, 421, 807, 1013, 1061
Hpy8I	GTNNAC	3 cut(s)	100, 727, 1162
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	5 cut(s)	199, 338, 439, 441, 505
HpyCH4III	ACNGT	2 cut(s)	545, 1236
HpyCH4IV	ACGT	1 cut(s)	785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 320, 581, 1125, 1203
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	8 cut(s)	260, 415, 424, 471, 802, 845, 896, 1227
HspAI	GCGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	173, 264, 347, 568, 770
LmnI	GCTCC	2 cut(s)	388, 1116
Lsp1109I	GCAGC	8 cut(s)	100, 316, 323, 326, 447, 686, 1087, 1106
LweI	GCATC	8 cut(s)	112, 462, 557, 571, 682, 785, 1112, 1160
MaeI	CTAG	3 cut(s)	275, 308, 318
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	2 cut(s)	358, 482
MalI	GATC	5 cut(s)	175, 266, 349, 570, 772
MboI	GATC	5 cut(s)	173, 264, 347, 568, 770
MboII	GAAGA	8 cut(s)	70, 152, 214, 221, 599, 992, 1166, 1190
MflI	RGATCY	2 cut(s)	173, 347
MhlI	GDGCHC	2 cut(s)	729, 1164
MluCI	AATT	7 cut(s)	132, 193, 516, 641, 860, 915, 1184
MlyI	GAGTC	3 cut(s)	45, 446, 1048
MmeI	TCCRAC	1 cut(s)	637
Mph1103I	ATGCAT	1 cut(s)	800
MseI	TTAA	2 cut(s)	491, 708
MslI	CAYNNNNRTG	2 cut(s)	944, 969
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	3 cut(s)	889, 1086, 1229
MspR9I	CCNGG	5 cut(s)	477, 818, 1087, 1229, 1230
MvaI	CCWGG	2 cut(s)	477, 818
MwoI	GCNNNNNNNGC	5 cut(s)	122, 320, 581, 1125, 1203
NciI	CCSGG	3 cut(s)	1087, 1229, 1230
NdeI	CATATG	2 cut(s)	1130, 1244
NdeII	GATC	5 cut(s)	173, 264, 347, 568, 770
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	8 cut(s)	260, 415, 424, 471, 802, 845, 896, 1227
NlaIV	GGNNCC	1 cut(s)	1091
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	1 cut(s)	896
PaeI	GCATGC	1 cut(s)	896
PagI	TCATGA	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	377, 417
Pfl23II	CGTACG	1 cut(s)	782
PflMI	CCANNNNNTGG	1 cut(s)	48
PkrI	GCNGC	8 cut(s)	115, 306, 313, 316, 437, 676, 1102, 1121
PleI	GAGTC	3 cut(s)	44, 446, 1048
PpsI	GAGTC	3 cut(s)	44, 446, 1048
Ppu21I	YACGTR	1 cut(s)	786
PsiI	TTATAA	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	475, 816
PspGI	CCWGG	2 cut(s)	475, 816
PspLI	CGTACG	1 cut(s)	782
PspN4I	GGNNCC	1 cut(s)	1091
PspPI	GGNCC	2 cut(s)	760, 809
PsrI	GAACNNNNNNTAC	2 cut(s)	733, 765
PstI	CTGCAG	1 cut(s)	1124
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	173, 347
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	784, 839
RsaNI	GTAC	2 cut(s)	783, 838
RseI	CAYNNNNRTG	2 cut(s)	944, 969
SaqAI	TTAA	2 cut(s)	491, 708
SatI	GCNGC	8 cut(s)	114, 305, 312, 315, 436, 675, 1101, 1120
Sau3AI	GATC	5 cut(s)	173, 264, 347, 568, 770
Sau96I	GGNCC	2 cut(s)	760, 809
SchI	GAGTC	3 cut(s)	45, 446, 1048
ScrFI	CCNGG	5 cut(s)	477, 818, 1087, 1229, 1230
SduI	GDGCHC	2 cut(s)	729, 1164
SfaNI	GCATC	8 cut(s)	112, 462, 557, 571, 682, 785, 1112, 1160
SfcI	CTRYAG	1 cut(s)	1120
SinI	GGWCC	1 cut(s)	809
SmaI	CCCGGG	1 cut(s)	1230
SmiMI	CAYNNNNRTG	2 cut(s)	944, 969
SmlI	CTYRAG	2 cut(s)	240, 1080
SmoI	CTYRAG	2 cut(s)	240, 1080
SnaBI	TACGTA	1 cut(s)	786
SphI	GCATGC	1 cut(s)	896
Sse9I	AATT	7 cut(s)	132, 193, 516, 641, 860, 915, 1184
SsiI	CCGC	3 cut(s)	526, 763, 1173
SspI	AATATT	2 cut(s)	854, 884
SspMI	CTAG	3 cut(s)	275, 308, 318
StyD4I	CCNGG	5 cut(s)	475, 816, 1085, 1227, 1228
TaaI	ACNGT	2 cut(s)	545, 1236
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	3 cut(s)	120, 1029, 1110
TasI	AATT	7 cut(s)	132, 193, 516, 641, 860, 915, 1184
TfiI	GAWTC	2 cut(s)	377, 417
Tru1I	TTAA	2 cut(s)	491, 708
Tru9I	TTAA	2 cut(s)	491, 708
TscAI	CASTG	6 cut(s)	159, 220, 360, 550, 951, 1129
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	8 cut(s)	113, 304, 311, 314, 435, 674, 1100, 1119
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	9 cut(s)	138, 144, 153, 357, 815, 858, 993, 1206, 1212
TspMI	CCCGGG	1 cut(s)	1228
TspRI	CASTG	6 cut(s)	159, 220, 360, 550, 951, 1129
Van91I	CCANNNNNTGG	1 cut(s)	48
VneI	GTGCAC	2 cut(s)	725, 1160
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	860
XceI	RCATGY	1 cut(s)	896
XcmI	CCANNNNNNNNNTGG	2 cut(s)	79, 1068
XmaI	CCCGGG	1 cut(s)	1228
XspI	CTAG	3 cut(s)	275, 308, 318
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.