Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Reverse (-)

16695939 .. 16699638

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGTCTCAGTAAACCTCACAAGGTCGGCAATGGAGTCTCCGTCAGATGGGCTTCTCTCTTCTGCATTGCCAGCTTCTTCCTCGGTGTTCTTGTTGTCAACAGCTTTTGGGGTGTTCCCGATCCAGACAAAATTGATGAGGAGGCTTCACCACTGGAGAAAGATCAACCAAGAAGAGTTCTGCCTCCCATAGTTAATTGTGAGAAGAAGGAGGTCACTGATGGCGTGGGAGACATCCTTTCTCAAGTCTCGCAAACACATGATGTGATCATGGCATTAGATAAGACAATCTCCACATTAGAGGTCCAGCTAGCGACAGCGAGAGCTTCTAAATCTGGCAATCATGAAGGATCTCCTGTGGTGATAAGACCGGGAAAGGAGCCATTGAAAGAGCGCCAGAAGCTTTTCTTTGTGATGGGAATCATGACTGCCTTTAGCAGTCGAAAACGAAGGGAGTCAATCAGGGAAACGTGGATGCCCCAAGGGGATGAGTTAAAGAAGCTAGAGGCAGAAAAGGGAATTATAATGCGGTTTGTTATTGGACACAGTGCAACTCCAGGTGGCCTTTTGGATCGTGCCATTGATGTAGAAGATGAGAAACATAAGGATTTTTTCCGGCTGAACCACATAGAAGGATATCACGAATTGTCGTCAAAAACCCAAACATATTTTACCGCAGCTGTCTCTAAGTGGGATGCTGACTTTTATATCAAGGTTGATGACGATGTGCACATAAATCTTGGAATGGTTGGTTCTACTTTGGCCAGTCATAGATCAAAACCTCGTACATATATCGGTTGTATGAAGTCTGGACCTGTCCTAGCGAATAAGGGGGTCAAGTACCATGAACCGGAATATTGGAAATTTGGAGAGGAGGGAAATAAGTATTTTCGGCATGCAACAGGTCAAATATACGCAATTTCCAAAGATTTAGCAACTTACATCTCAGTCCATCGGCACATACTTCACAAATATGCAAATGAGGATGTCTCTTTGGGTTCTTGGTTTATTGGTCTTGATGTTGAGCACATTGACGAGCGAAGCCTTTGCTGTGGTACCTCTACTGAGTGTGAGTGGAAAGCTCAAGCAGGAAACCCTTGTGCTGCATCGTTCGACTGGAGCTGCAGCGGCATATGCAAATCGGTGGAGAGAATGGAGGAGGTGCACGAGCGATGTGGAGAAGGTGATGAAGCTATTTGGCACACTAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

405

Amino Acids

45.34

Weight (kDa)

6.2

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
Acc65I	GGTACC	1 cut(s)	1055
AccB1I	GGYRCC	1 cut(s)	1055
AciI	CCGC	3 cut(s)	529, 675, 1128
AclWI	GGATC	3 cut(s)	116, 358, 579
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	863
AfaI	GTAC	3 cut(s)	787, 842, 1057
AfiI	CCNNNNNNNGG	2 cut(s)	48, 850
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	556
Alw21I	GWGCWC	3 cut(s)	732, 1029, 1167
Alw26I	GTCTC	6 cut(s)	11, 43, 225, 253, 688, 994
Alw44I	GTGCAC	2 cut(s)	728, 1163
AlwI	GGATC	3 cut(s)	116, 358, 579
AoxI	GGCC	2 cut(s)	562, 762
ApaLI	GTGCAC	2 cut(s)	728, 1163
ApeKI	GCWGC	4 cut(s)	677, 1103, 1122, 1125
ApoI	RAATTY	1 cut(s)	863
Asp700I	GAANNNNTTC	1 cut(s)	404
Asp718I	GGTACC	1 cut(s)	1055
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	304, 812
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	3 cut(s)	141, 373, 1196
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	304, 812
BaeGI	GKGCMC	2 cut(s)	732, 1167
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	1055
BauI	CACGAG	1 cut(s)	1166
Bbv12I	GWGCWC	3 cut(s)	732, 1029, 1167
BbvI	GCAGC	4 cut(s)	689, 1090, 1109, 1137
BccI	CCATC	4 cut(s)	42, 215, 409, 960
BcgI	CGANNNNNNTGC	2 cut(s)	1029, 1063
BciT130I	CCWGG	1 cut(s)	558
BclI	TGATCA	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	6 cut(s)	11, 43, 225, 253, 688, 994
BfaI	CTAG	4 cut(s)	311, 503, 821, 1206
BfmI	CTRYAG	1 cut(s)	1123
BfoI	RGCGCY	1 cut(s)	397
BisI	GCNGC	5 cut(s)	678, 1104, 1123, 1126, 1129
BlsI	GCNGC	5 cut(s)	679, 1105, 1124, 1127, 1130
Bme1390I	CCNGG	2 cut(s)	372, 558
Bme18I	GGWCC	2 cut(s)	304, 812
BmgT120I	GGNCC	2 cut(s)	304, 812
BmiI	GGNNCC	2 cut(s)	381, 1057
BmrFI	CCNGG	2 cut(s)	372, 558
BmsI	GCATC	3 cut(s)	465, 685, 1115
BmtI	GCTAGC	1 cut(s)	314
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	3 cut(s)	176, 540, 1138
BpuEI	CTTGAG	2 cut(s)	228, 1068
BpuMI	CCSGG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	82, 481
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 850
Bse1I	ACTGG	3 cut(s)	159, 765, 1121
Bse3DI	GCAATG	2 cut(s)	37, 66
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	82, 481
BseGI	GGATG	5 cut(s)	234, 480, 493, 700, 991
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	48, 850
BseMI	GCAATG	2 cut(s)	37, 66
BseMII	CTCAG	3 cut(s)	22, 960, 1056
BseNI	ACTGG	3 cut(s)	159, 765, 1121
BseRI	GAGGAG	3 cut(s)	155, 887, 1172
BseSI	GKGCMC	2 cut(s)	732, 1167
BseXI	GCAGC	4 cut(s)	689, 1090, 1109, 1137
BshFI	GGCC	2 cut(s)	564, 764
BshNI	GGYRCC	1 cut(s)	1055
BsiHKAI	GWGCWC	3 cut(s)	732, 1029, 1167
BsiSI	CCGG	3 cut(s)	371, 616, 851
BslI	CCNNNNNNNGG	2 cut(s)	48, 850
BsmAI	GTCTC	6 cut(s)	11, 43, 225, 253, 688, 994
BsnI	GGCC	2 cut(s)	564, 764
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	732, 1029, 1167
Bsp143I	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
BspACI	CCGC	3 cut(s)	529, 675, 1128
BspANI	GGCC	2 cut(s)	564, 764
BspCNI	CTCAG	3 cut(s)	21, 959, 1057
BspHI	TCATGA	2 cut(s)	343, 423
BspLI	GGNNCC	2 cut(s)	381, 1057
BspMAI	CTGCAG	1 cut(s)	1127
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	3 cut(s)	116, 358, 579
BspT107I	GGYRCC	1 cut(s)	1055
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	37, 66
BsrI	ACTGG	3 cut(s)	159, 765, 1121
BssECI	CCNNGG	2 cut(s)	82, 481
BssMI	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	1166
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	65, 169
BstC8I	GCNNGC	3 cut(s)	73, 312, 897
BstDEI	CTNAG	4 cut(s)	8, 687, 946, 1065
BstF5I	GGATG	5 cut(s)	234, 480, 493, 700, 991
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	6 cut(s)	124, 166, 270, 353, 574, 776
BstMAI	GTCTC	6 cut(s)	11, 43, 225, 253, 688, 994
BstMBI	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 400, 1128, 1134
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	899
BstSCI	CCNGG	2 cut(s)	370, 556
BstSFI	CTRYAG	1 cut(s)	1123
BstSLI	GKGCMC	2 cut(s)	732, 1167
BstV1I	GCAGC	4 cut(s)	689, 1090, 1109, 1137
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	564, 764
BtgZI	GCGATG	1 cut(s)	1186
BtsCI	GGATG	5 cut(s)	234, 480, 493, 700, 991
BtsIMutI	CAGTG	3 cut(s)	152, 216, 553
Cac8I	GCNNGC	3 cut(s)	73, 312, 897
CciI	TCATGA	2 cut(s)	343, 423
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	304, 812
Csp6I	GTAC	3 cut(s)	786, 841, 1056
CviAII	CATG	6 cut(s)	260, 271, 344, 424, 845, 896
CviQI	GTAC	3 cut(s)	786, 841, 1056
DdeI	CTNAG	4 cut(s)	8, 687, 946, 1065
DpnI	GATC	6 cut(s)	123, 165, 269, 352, 573, 775
DpnII	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	65, 169
EarI	CTCTTC	2 cut(s)	65, 169
Eco130I	CCWWGG	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	304, 812
EcoRII	CCWGG	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	6 cut(s)	263, 274, 347, 427, 848, 899
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	6 cut(s)	259, 270, 343, 423, 844, 895
FauNDI	CATATG	1 cut(s)	1133
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	5 cut(s)	678, 1104, 1123, 1126, 1129
FokI	GGATG	5 cut(s)	221, 487, 500, 707, 998
Fsp4HI	GCNGC	5 cut(s)	678, 1104, 1123, 1126, 1129
FspBI	CTAG	4 cut(s)	311, 503, 821, 1206
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	5 cut(s)	678, 1104, 1123, 1126, 1129
GsuI	CTGGAG	3 cut(s)	176, 540, 1138
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	564, 764
HapII	CCGG	3 cut(s)	371, 616, 851
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	6 cut(s)	263, 274, 347, 427, 848, 899
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	36, 420, 455
HpaII	CCGG	3 cut(s)	371, 616, 851
HphI	GGTGA	3 cut(s)	141, 373, 1196
Hpy166II	GTNNAC	4 cut(s)	14, 100, 730, 1165
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	7 cut(s)	119, 125, 344, 424, 641, 810, 1016
Hpy8I	GTNNAC	4 cut(s)	14, 100, 730, 1165
HpyAV	CCTTC	5 cut(s)	202, 341, 444, 626, 1175
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	9 cut(s)	66, 551, 730, 899, 977, 1106, 1125, 1137, 1165
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 400, 1128, 1134
HpyF3I	CTNAG	4 cut(s)	8, 687, 946, 1065
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	6 cut(s)	263, 274, 347, 427, 848, 899
HspAI	GCGC	1 cut(s)	394
KpnI	GGTACC	1 cut(s)	1059
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
LmnI	GCTCC	2 cut(s)	379, 1119
Lsp1109I	GCAGC	4 cut(s)	689, 1090, 1109, 1137
LweI	GCATC	3 cut(s)	465, 685, 1115
MaeI	CTAG	4 cut(s)	311, 503, 821, 1206
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	6 cut(s)	123, 165, 269, 352, 573, 775
MboI	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
MboII	GAAGA	5 cut(s)	52, 70, 186, 217, 602
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	3 cut(s)	732, 1029, 1167
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	6 cut(s)	132, 196, 519, 644, 863, 918
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	45, 464
Mox20I	TGGCCA	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	2 cut(s)	195, 494
MslI	CAYNNNNRTG	1 cut(s)	972
Msp20I	TGGCCA	1 cut(s)	764
MspA1I	CMGCKG	2 cut(s)	680, 1128
MspI	CCGG	3 cut(s)	371, 616, 851
MspR9I	CCNGG	2 cut(s)	372, 558
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	4 cut(s)	72, 400, 1128, 1134
NciI	CCSGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	1133
NdeII	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	6 cut(s)	263, 274, 347, 427, 848, 899
NlaIV	GGNNCC	2 cut(s)	381, 1057
NmuCI	GTSAC	1 cut(s)	214
NspI	RCATGY	1 cut(s)	899
PaeI	GCATGC	1 cut(s)	899
PagI	TCATGA	2 cut(s)	343, 423
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	5 cut(s)	679, 1105, 1124, 1127, 1130
PleI	GAGTC	2 cut(s)	44, 463
PpsI	GAGTC	2 cut(s)	44, 463
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	2 cut(s)	381, 1057
PspPI	GGNCC	2 cut(s)	304, 812
PstI	CTGCAG	1 cut(s)	1127
PsuI	RGATCY	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	3 cut(s)	787, 842, 1057
RsaNI	GTAC	3 cut(s)	786, 841, 1056
RseI	CAYNNNNRTG	1 cut(s)	972
SaqAI	TTAA	2 cut(s)	195, 494
SatI	GCNGC	5 cut(s)	678, 1104, 1123, 1126, 1129
Sau3AI	GATC	6 cut(s)	121, 163, 267, 350, 571, 773
Sau96I	GGNCC	2 cut(s)	304, 812
SchI	GAGTC	2 cut(s)	45, 464
ScrFI	CCNGG	2 cut(s)	372, 558
SduI	GDGCHC	3 cut(s)	732, 1029, 1167
SfaNI	GCATC	3 cut(s)	465, 685, 1115
SfcI	CTRYAG	1 cut(s)	1123
SinI	GGWCC	2 cut(s)	304, 812
SmiMI	CAYNNNNRTG	1 cut(s)	972
SmlI	CTYRAG	2 cut(s)	243, 1083
SmoI	CTYRAG	2 cut(s)	243, 1083
SphI	GCATGC	1 cut(s)	899
Sse9I	AATT	6 cut(s)	132, 196, 519, 644, 863, 918
SsiI	CCGC	3 cut(s)	529, 675, 1128
SspI	AATATT	1 cut(s)	857
SspMI	CTAG	4 cut(s)	311, 503, 821, 1206
StyD4I	CCNGG	2 cut(s)	370, 556
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	2 cut(s)	442, 1113
TasI	AATT	6 cut(s)	132, 196, 519, 644, 863, 918
TauI	GCSGC	1 cut(s)	1131
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	2 cut(s)	195, 494
Tru9I	TTAA	2 cut(s)	195, 494
TscAI	CASTG	3 cut(s)	159, 223, 553
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	4 cut(s)	677, 1103, 1122, 1125
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	360, 818, 861, 1203
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	159, 223, 553
VneI	GTGCAC	2 cut(s)	728, 1163
VpaK11BI	GGWCC	2 cut(s)	304, 812
XapI	RAATTY	1 cut(s)	863
XceI	RCATGY	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	4 cut(s)	311, 503, 821, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.