Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007011

Physical Location & Seq

Genomic Coordinates Reverse (-)

12769620 .. 12773625

Gene Structure 4006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G133400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGTCTGAGCAGACCTCACAAGGTTGGCAATGGAGTCTCCGCCAGATGGGTCTCTCTCTTTTGCATTGCCAGCTTCTTCTTGGGTGTTCTTGTTGTCAACAGGTTATGGGGTGTTCCTGACCCAGAAAAAATTGACGAGGAGGCTTCATCACTGGAGAAACGTCAATTAAGAGCTCTGCATCTCAATGTTAATTGTGAGAAGAAGGAGGCAGCTGACCGGGCGGGAGACATCCTTTTTCAAGTCTCACAAACACATGATGTGATCATGGCATTAGATAAGACAATCTCCTCATTGGAGGTTCAGCTAGCGGCAGCTAGAGCTTCCAAAGCTGACAAGGGTGAAGGATCTCCAGTGGTTACAAAAACAGGAAGCGAGCCATTGAAAGAGCGCCAGAAGGTTTTTTTTGTCATGGGAATCATGACTGCCTTCAGCAGTCGAAAACGAAGGGAGTCAATCAGGGAAACGTGGATGCCCCAAGGGGACGAGTTAAAGAAGTTGGAGACAGAAAAGGGAATTATAATGCGGTTTGTTATTGGACACAGTGCAACTCCAGGTGGCGTCTTGGATCGAGCCATTGACGCGGAAGATGAGAAGCATAAGGATTTTTTGCGACTGAACCATATAGAAGGATATCACGAATTGTCATCAAAAACCCAAATCTATTTTGCGGCAGCTGTCGCTAAGTGGGATGCTGACTTCTATATTAAAGTTGATGATGATGTGCACATAAATCTTGGAATGGTTGGTTCTACTTTGGCCCGTCATAGATCAAAACCTCGTACATATATTGGTTGCATGAAGTCTGGACCTGTCCTGGCAAATAAGGGGGTCAAGTACCATGAACCGGAATATTGGAAATTTGGAGAGGAGGGAAATAAGTATTTTCGTCATGCAACGGGTCAAATATACGCAATTTCCAAAGATTTGGCAACTTACATTTCAGTACATAGGCACATACTTCACAGATATGCAAATGAAGATGTCTCTTTGGGTTCTTGGTTTATTGGTCTTGATGTTGAGCACATTGATGAAAGAAGCCTTTGCTGTGGGACTCCTCCTGAATGTGAGTGGAAAGCTCAAGCAGGAAACCCTTGTGCTGCATCATTTGACTGGAGCTGCAGTGGCATATGCAAATCAGTGGAGAGAATGGAGGAGGTGCACCAGCGATGTGGGGAGGGTGATGAAGCCATTTGGCACACTAGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007275 GO:0008150 GO:0008378 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0022414 GO:0031090 GO:0031984 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

404

Amino Acids

45.27

Weight (kDa)

6.63

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32930
fragaria_vesca	FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510 FvH4_5g10510
malus_domestica	MD00G1034600.v1.1 MD06G1122400.v1.1
prunus_persica	Prupe.5G133400_v2.0.a1 Prupe.5G133400_v2.0.a1
pyrus_communis	pycom06g11400 pycom14g11420
rosa_chinensis	RchiOBHm_Chr7g0187611
rosa_laevigata	RLG00000004766
rosa_multiflora	Rmu_sc0041260.1_g000001 Rmu_ssc0000110.1_g000015
rosa_roxburghii	Rroxscaffold_3G00267250
rosa_rugosa	Rorug06G0482900
rosa_samantha	Rh7AG088000 Rh7BG089300 Rh7CG088500 Rh7DG090300
rosa_wichuraiana	Rw0G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccII	CGCG	1 cut(s)	584
AciI	CCGC	6 cut(s)	42, 224, 311, 526, 584, 671
AclWI	GGATC	2 cut(s)	355, 576
AcsI	RAATTY	1 cut(s)	860
AcuI	CTGAAG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	3 cut(s)	784, 839, 948
AfiI	CCNNNNNNNGG	2 cut(s)	48, 847
AgsI	TTSAA	2 cut(s)	242, 385
AhlI	ACTAGT	1 cut(s)	1202
AjnI	CCWGG	2 cut(s)	553, 816
Alw21I	GWGCWC	4 cut(s)	178, 729, 1026, 1164
Alw26I	GTCTC	6 cut(s)	43, 58, 222, 250, 497, 991
Alw44I	GTGCAC	2 cut(s)	725, 1160
AlwI	GGATC	2 cut(s)	355, 576
AoxI	GGCC	1 cut(s)	759
ApaLI	GTGCAC	2 cut(s)	725, 1160
ApeKI	GCWGC	5 cut(s)	212, 314, 674, 1100, 1119
ApoI	RAATTY	1 cut(s)	860
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	760, 809
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	353, 1193
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	2 cut(s)	729, 1164
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	4 cut(s)	178, 729, 1026, 1164
BbvI	GCAGC	5 cut(s)	224, 326, 686, 1087, 1106
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	555, 818
BclI	TGATCA	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	6 cut(s)	43, 58, 222, 250, 497, 991
BcuI	ACTAGT	1 cut(s)	1202
BfaI	CTAG	3 cut(s)	308, 318, 1203
BfmI	CTRYAG	1 cut(s)	1120
BfoI	RGCGCY	1 cut(s)	394
BisI	GCNGC	7 cut(s)	213, 312, 315, 672, 675, 1101, 1120
BlsI	GCNGC	7 cut(s)	214, 313, 316, 673, 676, 1102, 1121
Bme1390I	CCNGG	3 cut(s)	221, 555, 818
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	2 cut(s)	760, 809
BmrFI	CCNGG	3 cut(s)	221, 555, 818
BmsI	GCATC	4 cut(s)	190, 462, 682, 1112
BmtI	GCTAGC	1 cut(s)	311
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	4 cut(s)	176, 336, 537, 1135
BpuEI	CTTGAG	1 cut(s)	1065
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	478
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	2 cut(s)	1108, 1138
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 847
Bse1I	ACTGG	3 cut(s)	159, 353, 1118
Bse3DI	GCAATG	2 cut(s)	37, 66
BseBI	CCWGG	2 cut(s)	555, 818
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	3 cut(s)	231, 477, 697
BseLI	CCNNNNNNNGG	2 cut(s)	48, 847
BseMI	GCAATG	2 cut(s)	37, 66
BseNI	ACTGG	3 cut(s)	159, 353, 1118
BseRI	GAGGAG	5 cut(s)	155, 280, 884, 1047, 1169
BseSI	GKGCMC	2 cut(s)	729, 1164
BseXI	GCAGC	5 cut(s)	224, 326, 686, 1087, 1106
Bsh1236I	CGCG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	761
BsiHKAI	GWGCWC	4 cut(s)	178, 729, 1026, 1164
BsiSI	CCGG	2 cut(s)	220, 848
BslFI	GGGAC	2 cut(s)	497, 1066
BslI	CCNNNNNNNGG	2 cut(s)	48, 847
BsmAI	GTCTC	6 cut(s)	43, 58, 222, 250, 497, 991
BsmFI	GGGAC	2 cut(s)	497, 1066
BsnI	GGCC	1 cut(s)	761
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	4 cut(s)	178, 729, 1026, 1164
Bsp143I	GATC	4 cut(s)	264, 347, 568, 770
BspACI	CCGC	6 cut(s)	42, 224, 311, 526, 584, 671
BspANI	GGCC	1 cut(s)	761
BspFNI	CGCG	1 cut(s)	584
BspHI	TCATGA	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	1124
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	355, 576
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	37, 66
BsrI	ACTGG	3 cut(s)	159, 353, 1118
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	4 cut(s)	264, 347, 568, 770
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	2 cut(s)	555, 818
Bst4CI	ACNGT	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	73, 309, 377
BstDEI	CTNAG	2 cut(s)	8, 684
BstF5I	GGATG	3 cut(s)	231, 477, 697
BstFNI	CGCG	1 cut(s)	584
BstH2I	RGCGCY	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	4 cut(s)	267, 350, 571, 773
BstMAI	GTCTC	6 cut(s)	43, 58, 222, 250, 497, 991
BstMBI	GATC	4 cut(s)	264, 347, 568, 770
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 221, 320, 329, 581, 680, 1125
BstNI	CCWGG	2 cut(s)	555, 818
BstSCI	CCNGG	3 cut(s)	219, 553, 816
BstSFI	CTRYAG	1 cut(s)	1120
BstSLI	GKGCMC	2 cut(s)	729, 1164
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	5 cut(s)	224, 326, 686, 1087, 1106
BstX2I	RGATCY	1 cut(s)	347
BstXI	CCANNNNNNTGG	2 cut(s)	928, 1172
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	761
BtgZI	GCGATG	1 cut(s)	1183
BtsCI	GGATG	3 cut(s)	231, 477, 697
BtsI	GCAGTG	1 cut(s)	1129
BtsIMutI	CAGTG	5 cut(s)	152, 360, 550, 1129, 1146
Cac8I	GCNNGC	3 cut(s)	73, 309, 377
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	760, 809
CseI	GACGC	2 cut(s)	550, 590
Csp6I	GTAC	3 cut(s)	783, 838, 947
CviAII	CATG	7 cut(s)	257, 268, 412, 421, 799, 842, 893
CviQI	GTAC	3 cut(s)	783, 838, 947
DdeI	CTNAG	2 cut(s)	8, 684
DpnI	GATC	4 cut(s)	266, 349, 570, 772
DpnII	GATC	4 cut(s)	264, 347, 568, 770
EciI	GGCGGA	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	415
EcoICRI	GAGCTC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	553, 816
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	7 cut(s)	260, 271, 415, 424, 802, 845, 896
FaqI	GGGAC	2 cut(s)	497, 1066
FatI	CATG	7 cut(s)	256, 267, 411, 420, 798, 841, 892
FauI	CCCGC	1 cut(s)	217
FauNDI	CATATG	1 cut(s)	1130
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	7 cut(s)	213, 312, 315, 672, 675, 1101, 1120
FokI	GGATG	3 cut(s)	218, 484, 704
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	7 cut(s)	213, 312, 315, 672, 675, 1101, 1120
FspBI	CTAG	3 cut(s)	308, 318, 1203
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	7 cut(s)	213, 312, 315, 672, 675, 1101, 1120
GsuI	CTGGAG	4 cut(s)	176, 336, 537, 1135
HaeII	RGCGCY	1 cut(s)	394
HaeIII	GGCC	1 cut(s)	761
HapII	CCGG	2 cut(s)	220, 848
HgaI	GACGC	2 cut(s)	550, 590
HhaI	GCGC	1 cut(s)	393
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	7 cut(s)	260, 271, 415, 424, 802, 845, 896
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	36, 417, 452, 1054
HpaII	CCGG	2 cut(s)	220, 848
HphI	GGTGA	2 cut(s)	353, 1193
Hpy166II	GTNNAC	3 cut(s)	100, 727, 1162
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	6 cut(s)	119, 421, 638, 807, 1013, 1061
Hpy8I	GTNNAC	3 cut(s)	100, 727, 1162
HpyAV	CCTTC	6 cut(s)	199, 338, 391, 439, 441, 623
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	2 cut(s)	163, 467
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 221, 320, 329, 581, 680, 1125
HpyF3I	CTNAG	2 cut(s)	8, 684
HpySE526I	ACGT	2 cut(s)	163, 467
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	7 cut(s)	260, 271, 415, 424, 802, 845, 896
HspAI	GCGC	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	264, 347, 568, 770
LmnI	GCTCC	1 cut(s)	1116
Lsp1109I	GCAGC	5 cut(s)	224, 326, 686, 1087, 1106
LweI	GCATC	4 cut(s)	190, 462, 682, 1112
MaeI	CTAG	3 cut(s)	308, 318, 1203
MaeII	ACGT	2 cut(s)	163, 467
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	4 cut(s)	266, 349, 570, 772
MboI	GATC	4 cut(s)	264, 347, 568, 770
MboII	GAAGA	4 cut(s)	70, 214, 599, 992
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	4 cut(s)	178, 729, 1026, 1164
MluCI	AATT	7 cut(s)	132, 167, 193, 516, 641, 860, 915
MlyI	GAGTC	3 cut(s)	45, 461, 1048
MmeI	TCCRAC	1 cut(s)	480
MseI	TTAA	4 cut(s)	170, 192, 491, 708
MslI	CAYNNNNRTG	3 cut(s)	186, 969, 1029
MspA1I	CMGCKG	2 cut(s)	215, 677
MspI	CCGG	2 cut(s)	220, 848
MspR9I	CCNGG	3 cut(s)	221, 555, 818
MvaI	CCWGG	2 cut(s)	555, 818
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	7 cut(s)	72, 221, 320, 329, 581, 680, 1125
NciI	CCSGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	1130
NdeII	GATC	4 cut(s)	264, 347, 568, 770
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	7 cut(s)	260, 271, 415, 424, 802, 845, 896
PagI	TCATGA	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	7 cut(s)	214, 313, 316, 673, 676, 1102, 1121
PleI	GAGTC	3 cut(s)	44, 460, 1048
PpsI	GAGTC	3 cut(s)	44, 460, 1048
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	553, 816
PspGI	CCWGG	2 cut(s)	553, 816
PspPI	GGNCC	2 cut(s)	760, 809
PstI	CTGCAG	1 cut(s)	1124
PsuI	RGATCY	1 cut(s)	347
PvuII	CAGCTG	2 cut(s)	215, 677
RsaI	GTAC	3 cut(s)	784, 839, 948
RsaNI	GTAC	3 cut(s)	783, 838, 947
RseI	CAYNNNNRTG	3 cut(s)	186, 969, 1029
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	170, 192, 491, 708
SatI	GCNGC	7 cut(s)	213, 312, 315, 672, 675, 1101, 1120
Sau3AI	GATC	4 cut(s)	264, 347, 568, 770
Sau96I	GGNCC	2 cut(s)	760, 809
SchI	GAGTC	3 cut(s)	45, 461, 1048
ScrFI	CCNGG	3 cut(s)	221, 555, 818
SduI	GDGCHC	4 cut(s)	178, 729, 1026, 1164
SfaNI	GCATC	4 cut(s)	190, 462, 682, 1112
SfcI	CTRYAG	1 cut(s)	1120
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	3 cut(s)	186, 969, 1029
SmlI	CTYRAG	1 cut(s)	1080
SmoI	CTYRAG	1 cut(s)	1080
SpeI	ACTAGT	1 cut(s)	1202
Sse9I	AATT	7 cut(s)	132, 167, 193, 516, 641, 860, 915
SsiI	CCGC	6 cut(s)	42, 224, 311, 526, 584, 671
SspI	AATATT	1 cut(s)	854
SspMI	CTAG	3 cut(s)	308, 318, 1203
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	3 cut(s)	219, 553, 816
StyI	CCWWGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	2 cut(s)	166, 470
TaqI	TCGA	2 cut(s)	439, 571
TasI	AATT	7 cut(s)	132, 167, 193, 516, 641, 860, 915
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	2 cut(s)	314, 674
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	4 cut(s)	170, 192, 491, 708
Tru9I	TTAA	4 cut(s)	170, 192, 491, 708
TscAI	CASTG	5 cut(s)	159, 360, 550, 1129, 1146
TseI	GCWGC	5 cut(s)	212, 314, 674, 1100, 1119
TspDTI	ATGAA	6 cut(s)	138, 815, 858, 993, 1047, 1200
TspRI	CASTG	5 cut(s)	159, 360, 550, 1129, 1146
VneI	GTGCAC	2 cut(s)	725, 1160
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XspI	CTAG	3 cut(s)	308, 318, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.