Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Forward (+)

11955656 .. 11957402

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTCTTCTTCTCTATCAACTCTTTGCAGCTCAACTTCTTCTTCTCTACATCCCAACTCCAAACTCTCACATTCTCTTTCAGCTAAATTATCCTCCAAAGCAAATGTTTCCGTCCAATTTCTGGGAAAGAAACAGTCTCCGCTTCTCTCCTCAACTCCGAGATTTCTCACTGTTATCGCCATGGCTCCACCTAAACCCGGAGGCAAAGCTAAAAAAGTTGTGGGAGTTATCAAACTTGCTTTAGAGGCGGGAAAAGCAACTCCGGCACCACCGGTTGGTCCGGCGCTTGGTTCTAAGGGAGTTAACATTATGGCTTTTTGCAAGGATTATAATGCAAGAACTGCTGATAAAGCTGGTTATATCATTCCTGTTGAAATCACTGTCTTCGATGATAAGAGCTTCACGTTTATTCTCAAGACCCCGCCTGCTTCGGTTTTGTTGCTTAAAGCTGCAGGTGTTGAGAAGGGATCAAAAGATCCACAGCAAGATAAAGTTGGGGTGATAACAATAGACCAGCTACGCACAATTGCAGCAGAGAAGCTACCCGACCTGAACTGCACGACCATTGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGACATTGACCCTCCGATTCTTGAACCCAAAAAGAAAGCAGTTTTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

222

Amino Acids

23.15

Weight (kDa)

9.69

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	78 - 135	1.1e-27	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	140 - 208	3.5e-26	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	2 cut(s)	124, 278
AciI	CCGC	4 cut(s)	143, 251, 425, 576
AclWI	GGATC	2 cut(s)	473, 478
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	124, 200, 278, 290
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	377, 572, 641
AluBI	AGCT	9 cut(s)	33, 86, 212, 356, 402, 452, 520, 544, 605
AluI	AGCT	9 cut(s)	33, 86, 212, 356, 402, 452, 520, 544, 605
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	2 cut(s)	473, 478
AlwNI	CAGNNNCTG	1 cut(s)	599
ApeKI	GCWGC	4 cut(s)	30, 452, 533, 602
AsiGI	ACCGGT	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	42, 439, 545, 614
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	144
BfmI	CTRYAG	2 cut(s)	453, 600
BfoI	RGCGCY	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	4 cut(s)	31, 453, 534, 603
BlsI	GCNGC	4 cut(s)	32, 454, 535, 604
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	189, 270
BmrFI	CCNGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 200, 278, 290
Bse118I	RCCGGY	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	4 cut(s)	124, 200, 278, 290
BseMI	GCAATG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	142
BseXI	GCAGC	4 cut(s)	42, 439, 545, 614
BsgI	GTGCAG	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	274
BsiSI	CCGG	4 cut(s)	201, 266, 275, 284
BslI	CCNNNNNNNGG	4 cut(s)	124, 200, 278, 290
BsmAI	GTCTC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	470, 478
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	4 cut(s)	143, 251, 425, 576
BspLI	GGNNCC	2 cut(s)	189, 270
BspMAI	CTGCAG	2 cut(s)	457, 604
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	473, 478
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	2 cut(s)	470, 478
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	138, 175, 385
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	344, 599
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	2 cut(s)	473, 481
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	470, 478
BstMWI	GCNNNNNNNGC	6 cut(s)	248, 257, 266, 344, 353, 599
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	453, 600
BstV1I	GCAGC	4 cut(s)	42, 439, 545, 614
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	171, 381
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	599
CfoI	GCGC	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	281
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	2 cut(s)	184, 610
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	2 cut(s)	472, 480
DpnII	GATC	2 cut(s)	470, 478
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	187, 613
FaiI	YATR	6 cut(s)	185, 314, 333, 363, 581, 611
FatI	CATG	2 cut(s)	183, 609
FauI	CCCGC	2 cut(s)	244, 432
Fnu4HI	GCNGC	4 cut(s)	31, 453, 534, 603
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	31, 453, 534, 603
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	4 cut(s)	31, 453, 534, 603
HaeII	RGCGCY	1 cut(s)	290
HapII	CCGG	4 cut(s)	201, 266, 275, 284
HhaI	GCGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	187, 613
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	572, 585, 634
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	4 cut(s)	201, 266, 275, 284
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	162, 633
Hpy188III	TCNNGA	2 cut(s)	418, 638
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	460
HpyCH4III	ACNGT	3 cut(s)	138, 175, 385
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	8 cut(s)	30, 324, 338, 455, 533, 561, 593, 602
HpyF10VI	GCNNNNNNNGC	6 cut(s)	248, 257, 266, 344, 353, 599
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	407
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	187, 613
HspAI	GCGC	1 cut(s)	287
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	470, 478
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	4 cut(s)	42, 439, 545, 614
MaeII	ACGT	1 cut(s)	407
MalI	GATC	2 cut(s)	472, 480
MboI	GATC	2 cut(s)	470, 478
MboII	GAAGA	4 cut(s)	3, 33, 36, 379
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	3 cut(s)	89, 119, 528
MnlI	CCTC	5 cut(s)	106, 163, 197, 241, 639
MseI	TTAA	2 cut(s)	306, 447
MspI	CCGG	4 cut(s)	201, 266, 275, 284
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	528
MwoI	GCNNNNNNNGC	6 cut(s)	248, 257, 266, 344, 353, 599
NciI	CCSGG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	470, 478
NlaIII	CATG	2 cut(s)	187, 613
NlaIV	GGNNCC	2 cut(s)	189, 270
PaqCI	CACCTGC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	572, 585, 634
PflMI	CCANNNNNTGG	2 cut(s)	124, 278
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	32, 454, 535, 604
PsiI	TTATAA	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	189, 270
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	2 cut(s)	457, 604
PstNI	CAGNNNCTG	1 cut(s)	599
PsuI	RGATCY	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	306, 447
SatI	GCNGC	4 cut(s)	31, 453, 534, 603
Sau3AI	GATC	2 cut(s)	470, 478
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	453, 600
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	89, 119, 528
SsiI	CCGC	4 cut(s)	143, 251, 425, 576
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	3 cut(s)	138, 175, 385
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	390
TasI	AATT	3 cut(s)	89, 119, 528
TfiI	GAWTC	3 cut(s)	572, 585, 634
Tru1I	TTAA	2 cut(s)	306, 447
Tru9I	TTAA	2 cut(s)	306, 447
TscAI	CASTG	2 cut(s)	178, 388
TseI	GCWGC	4 cut(s)	30, 452, 533, 602
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	178, 388
Van91I	CCANNNNNTGG	2 cut(s)	124, 278
VpaK11BI	GGWCC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.