Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Reverse (-)

5954692 .. 5956568

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGTCGTCCCAACACCTCCTCCCCTCTTTCTCCTCACCCACCACCACTAATCACGACTCCACCAGGTCTCACCTCCTCTCCTCTTCTCTCTGGGCCTCACCCATCACCATCAGCAGCTTCTCTTCCTCCCCCAAACTCTCCCCCCTTCTGCAAACCCGCCGCCGCCTCCGCGTCACCGCAATGGCCCCACCCAAACCCGGCGGCAAAGCCAAGAAAGTGGTGGGAATGATTAAGCTGGCGCTTGAGGCCGGGAAGGCCACTCCGGCGCCACCGGTGGGTCCCGCTTTGGGTTCCAAGGGTGTGAATATCATGGCTTTCTGTAAGGACTACAATGCCAGGACTGCCGACAAGGCCGGTTATATCATTCCTGTCGAGATTACCGTCTACGATGATAAGAGTTTTACTTTCATTTTGAAGACTCCACCTGCATCGGTTTTGCTTCTTAAGGCTGCGGGAGCTGAGAAAGGTTCTAAAGACCCACAGTTAGAAAAAGTAGGGACGGTAACCATTGACCAGCTGCGAACAATTGCACAAGAGAAGCTACCAGACTTGAATTGCACAAGTTTAGAGTCGGCAATGAGAATTATAGCTGGCACCGCAGCTAATATGGGGATCGATATTGACCCTCCTGTTCTCGAAAAGAAAAAGAAGGAAGTCCTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

223

Amino Acids

23.6

Weight (kDa)

9.72

Isoelectric Point (pI)

49.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11_N	PF03946	78 - 135	2.1e-28	Ribosomal protein L11, N-terminal domain
Ribosomal_L11	PF00298	140 - 208	7e-27	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	2 cut(s)	268, 596
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	174
AciI	CCGC	9 cut(s)	160, 163, 166, 172, 180, 204, 285, 455, 600
AclWI	GGATC	1 cut(s)	623
AcyI	GRCGYC	2 cut(s)	5, 269
AfiI	CCNNNNNNNGG	3 cut(s)	200, 278, 290
AflII	CTTAAG	1 cut(s)	446
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	418, 556
AjnI	CCWGG	2 cut(s)	65, 338
AluBI	AGCT	7 cut(s)	120, 238, 461, 520, 544, 593, 605
AluI	AGCT	7 cut(s)	120, 238, 461, 520, 544, 593, 605
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	5 cut(s)	96, 186, 249, 258, 354
ApeKI	GCWGC	4 cut(s)	117, 452, 520, 602
AsiGI	ACCGGT	1 cut(s)	274
AspLEI	GCGC	2 cut(s)	244, 271
AspS9I	GGNCC	3 cut(s)	96, 187, 281
AsuC2I	CCSGG	2 cut(s)	201, 253
AsuHPI	GGTGA	5 cut(s)	30, 65, 93, 100, 169
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	2 cut(s)	268, 596
BbsI	GAAGAC	1 cut(s)	425
BbvI	GCAGC	4 cut(s)	129, 439, 507, 614
BccI	CCATC	2 cut(s)	113, 119
BciT130I	CCWGG	2 cut(s)	67, 340
BcnI	CCSGG	2 cut(s)	201, 253
BcoDI	GTCTC	1 cut(s)	75
BfoI	RGCGCY	2 cut(s)	245, 272
BfrI	CTTAAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	436
BglI	GCCNNNNNGGC	3 cut(s)	257, 266, 353
BisI	GCNGC	7 cut(s)	118, 163, 166, 205, 453, 521, 603
BlsI	GCNGC	7 cut(s)	119, 164, 167, 206, 454, 522, 604
Bme1390I	CCNGG	4 cut(s)	67, 201, 253, 340
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	3 cut(s)	96, 187, 281
BmiI	GGNNCC	6 cut(s)	189, 270, 282, 283, 295, 598
BmrFI	CCNGG	4 cut(s)	67, 201, 253, 340
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	201, 253
Bsa29I	ATCGAT	1 cut(s)	618
BsaHI	GRCGYC	2 cut(s)	5, 269
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 278, 290
Bse118I	RCCGGY	2 cut(s)	274, 356
Bse3DI	GCAATG	2 cut(s)	189, 585
BseBI	CCWGG	2 cut(s)	67, 340
BseCI	ATCGAT	1 cut(s)	618
BseDI	CCNNGG	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	200, 278, 290
BseMI	GCAATG	2 cut(s)	189, 585
BseMII	CTCAG	1 cut(s)	453
BseRI	GAGGAG	4 cut(s)	11, 25, 68, 73
BseXI	GCAGC	4 cut(s)	129, 439, 507, 614
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	5 cut(s)	98, 188, 251, 260, 356
BshNI	GGYRCC	2 cut(s)	268, 596
BshTI	ACCGGT	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	618
BsiSI	CCGG	5 cut(s)	201, 252, 266, 275, 357
BslFI	GGGAC	2 cut(s)	267, 514
BslI	CCNNNNNNNGG	3 cut(s)	200, 278, 290
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	267, 514
BsnI	GGCC	5 cut(s)	98, 188, 251, 260, 356
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	615
BspACI	CCGC	9 cut(s)	160, 163, 166, 172, 180, 204, 285, 455, 600
BspANI	GGCC	5 cut(s)	98, 188, 251, 260, 356
BspCNI	CTCAG	1 cut(s)	454
BspDI	ATCGAT	1 cut(s)	618
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	6 cut(s)	189, 270, 282, 283, 295, 598
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	2 cut(s)	268, 596
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	189, 585
BsrFI	RCCGGY	2 cut(s)	274, 356
BssAI	RCCGGY	2 cut(s)	274, 356
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	615
BssNI	GRCGYC	2 cut(s)	5, 269
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	2 cut(s)	67, 340
Bst4CI	ACNGT	3 cut(s)	385, 486, 505
Bst6I	CTCTTC	2 cut(s)	91, 130
BstACI	GRCGYC	2 cut(s)	5, 269
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	240, 595
BstDEI	CTNAG	1 cut(s)	462
BstEII	GGTNACC	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	174
BstH2I	RGCGCY	2 cut(s)	245, 272
BstHHI	GCGC	2 cut(s)	244, 271
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	615
BstMWI	GCNNNNNNNGC	8 cut(s)	171, 248, 257, 266, 344, 353, 458, 599
BstNI	CCWGG	2 cut(s)	67, 340
BstPI	GGTNACC	1 cut(s)	505
BstSCI	CCNGG	4 cut(s)	65, 199, 251, 338
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	129, 439, 507, 614
BstV2I	GAAGAC	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	618
BsuRI	GGCC	5 cut(s)	98, 188, 251, 260, 356
BsuTUI	ATCGAT	1 cut(s)	618
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	2 cut(s)	240, 595
CfoI	GCGC	2 cut(s)	244, 271
Cfr10I	RCCGGY	2 cut(s)	274, 356
Cfr13I	GGNCC	3 cut(s)	96, 187, 281
ClaI	ATCGAT	1 cut(s)	618
CseI	GACGC	1 cut(s)	163
CsiI	ACCWGGT	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	462
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	91, 130
EarI	CTCTTC	2 cut(s)	91, 130
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	505
EcoO109I	RGGNCCY	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	65, 338
EcoT14I	CCWWGG	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	1 cut(s)	316
FaiI	YATR	4 cut(s)	314, 363, 590, 611
FaqI	GGGAC	2 cut(s)	267, 514
FatI	CATG	1 cut(s)	312
FauI	CCCGC	3 cut(s)	167, 292, 448
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	7 cut(s)	118, 163, 166, 205, 453, 521, 603
Fsp4HI	GCNGC	7 cut(s)	118, 163, 166, 205, 453, 521, 603
GlaI	GCGC	2 cut(s)	243, 270
GluI	GCNGC	7 cut(s)	118, 163, 166, 205, 453, 521, 603
HaeII	RGCGCY	2 cut(s)	245, 272
HaeIII	GGCC	5 cut(s)	98, 188, 251, 260, 356
HapII	CCGG	5 cut(s)	201, 252, 266, 275, 357
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	244, 271
Hin1I	GRCGYC	2 cut(s)	5, 269
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	2 cut(s)	242, 269
HinP1I	GCGC	2 cut(s)	242, 269
HinfI	GANTC	3 cut(s)	59, 421, 572
HpaII	CCGG	5 cut(s)	201, 252, 266, 275, 357
HphI	GGTGA	5 cut(s)	30, 65, 93, 100, 169
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	56, 376, 638
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	158, 250, 646
HpyCH4III	ACNGT	3 cut(s)	385, 486, 505
HpyCH4V	TGCA	4 cut(s)	154, 431, 533, 561
HpyF10VI	GCNNNNNNNGC	8 cut(s)	171, 248, 257, 266, 344, 353, 458, 599
HpyF3I	CTNAG	1 cut(s)	462
Hsp92I	GRCGYC	2 cut(s)	5, 269
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	2 cut(s)	242, 269
KasI	GGCGCC	1 cut(s)	268
KflI	GGGWCCC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	615
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	4 cut(s)	129, 439, 507, 614
LweI	GCATC	1 cut(s)	440
MabI	ACCWGGT	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	175, 505
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	3 cut(s)	78, 117, 430
MfeI	CAATTG	1 cut(s)	528
MluCI	AATT	3 cut(s)	528, 556, 585
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	3 cut(s)	53, 415, 581
MseI	TTAA	2 cut(s)	234, 447
MslI	CAYNNNNRTG	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	520
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	5 cut(s)	201, 252, 266, 275, 357
MspR9I	CCNGG	4 cut(s)	67, 201, 253, 340
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	67, 340
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	8 cut(s)	171, 248, 257, 266, 344, 353, 458, 599
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	201, 253
NdeII	GATC	1 cut(s)	615
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	6 cut(s)	189, 270, 282, 283, 295, 598
NmuCI	GTSAC	1 cut(s)	175
PaqCI	CACCTGC	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PinAI	ACCGGT	1 cut(s)	274
PkrI	GCNGC	7 cut(s)	119, 164, 167, 206, 454, 522, 604
PleI	GAGTC	3 cut(s)	53, 415, 580
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	3 cut(s)	53, 415, 580
PpuMI	RGGWCCY	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	65, 338
PspEI	GGTNACC	1 cut(s)	505
PspGI	CCWGG	2 cut(s)	65, 338
PspN4I	GGNNCC	6 cut(s)	189, 270, 282, 283, 295, 598
PspPI	GGNCC	3 cut(s)	96, 187, 281
PspPPI	RGGWCCY	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	234, 447
SatI	GCNGC	7 cut(s)	118, 163, 166, 205, 453, 521, 603
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	3 cut(s)	96, 187, 281
SchI	GAGTC	3 cut(s)	53, 415, 581
ScrFI	CCNGG	4 cut(s)	67, 201, 253, 340
SexAI	ACCWGGT	1 cut(s)	65
SfaNI	GCATC	1 cut(s)	440
SfiI	GGCCNNNNNGGCC	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	245, 446
SmoI	CTYRAG	2 cut(s)	245, 446
Sse9I	AATT	3 cut(s)	528, 556, 585
SsiI	CCGC	9 cut(s)	160, 163, 166, 172, 180, 204, 285, 455, 600
SspDI	GGCGCC	1 cut(s)	268
StyD4I	CCNGG	4 cut(s)	65, 199, 251, 338
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	385, 486, 505
TaqI	TCGA	3 cut(s)	375, 618, 639
TasI	AATT	3 cut(s)	528, 556, 585
TauI	GCSGC	3 cut(s)	165, 168, 207
Tru1I	TTAA	2 cut(s)	234, 447
Tru9I	TTAA	2 cut(s)	234, 447
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	4 cut(s)	117, 452, 520, 602
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	400
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.