Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032029.1

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Forward (+)

2385 .. 3991

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032029.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggtgtcgtccatttccaccacccaacacctccttccatctttctcctcacccaacaccactaattacgactctaccaggtcgcagctgctctcctcttctctctggggctcacccatcagcataagcagcttctcttccacccccaaaatctctccccagttccaaacccggaggcggctcagcgtcaccgcaatggccccacccaaggccaaaccgggcggcaaagccaagaaagtggtcggaatgataaagctggcgcttgaggccgggaaggccactccggcgccgccggtgggtcccgcgctgggttctaaaggtgtgaatatcatggctttctgtaaggattacaatgccaggacggcggacaaggccggttacgtcattcccgtcgaaattaccgtctacgatgataagagttttactttcattttgaagactccacctgcttcgattttgcttcttaaggctgctggagctgagaaaggttcaaaagacccacaattggagaaagtagggactgtgaccattgaccagctgcgtacaattgcacaagagaagctaccagacttgaattgcacaactatagagtcggcaatgagaattatagctggcactgcagctaatatggggatcgatattgaccctcctgttctcgaaaagaaaaagaaggaagttcttctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

228

Amino Acids

24.24

Weight (kDa)

9.67

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	305
AciI	CCGC	6 cut(s)	178, 192, 222, 290, 303, 365
AclWI	GGATC	1 cut(s)	641
AcyI	GRCGYC	1 cut(s)	287
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	5 cut(s)	177, 208, 296, 308, 505
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	436, 492, 574
AjnI	CCWGG	2 cut(s)	77, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	8 cut(s)	88, 132, 256, 479, 538, 562, 611, 623
AluI	AGCT	8 cut(s)	88, 132, 256, 479, 538, 562, 611, 623
AlwI	GGATC	1 cut(s)	641
AoxI	GGCC	5 cut(s)	198, 210, 267, 276, 372
ApeKI	GCWGC	6 cut(s)	85, 88, 129, 470, 538, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	3 cut(s)	262, 289, 307
AspS9I	GGNCC	2 cut(s)	199, 299
AsuC2I	CCSGG	3 cut(s)	172, 219, 271
AsuHPI	GGTGA	3 cut(s)	42, 105, 181
AvaII	GGWCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	6 cut(s)	75, 97, 141, 457, 525, 632
BccI	CCATC	2 cut(s)	46, 125
BceAI	ACGGC	1 cut(s)	378
BciT130I	CCWGG	2 cut(s)	79, 358
BcnI	CCSGG	3 cut(s)	172, 219, 271
BfmI	CTRYAG	3 cut(s)	585, 618, 683
BfoI	RGCGCY	2 cut(s)	263, 290
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	454
BglI	GCCNNNNNGGC	3 cut(s)	275, 284, 362
BisI	GCNGC	9 cut(s)	86, 89, 130, 179, 223, 290, 471, 539, 621
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	9 cut(s)	87, 90, 131, 180, 224, 291, 472, 540, 622
Bme1390I	CCNGG	5 cut(s)	79, 172, 219, 271, 358
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	199, 299
BmiI	GGNNCC	4 cut(s)	201, 288, 300, 301
BmrFI	CCNGG	5 cut(s)	79, 172, 219, 271, 358
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	3 cut(s)	172, 219, 271
Bsa29I	ATCGAT	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 208, 296, 308, 505
Bse118I	RCCGGY	2 cut(s)	292, 374
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	201, 603
BseBI	CCWGG	2 cut(s)	79, 358
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	207
BseLI	CCNNNNNNNGG	5 cut(s)	177, 208, 296, 308, 505
BseMI	GCAATG	2 cut(s)	201, 603
BseMII	CTCAG	2 cut(s)	196, 471
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	2 cut(s)	37, 85
BseXI	GCAGC	6 cut(s)	75, 97, 141, 457, 525, 632
BseYI	CCCAGC	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	5 cut(s)	200, 212, 269, 278, 374
BshNI	GGYRCC	1 cut(s)	286
BshVI	ATCGAT	1 cut(s)	636
BsiSI	CCGG	6 cut(s)	172, 218, 270, 284, 293, 375
BslFI	GGGAC	2 cut(s)	285, 532
BslI	CCNNNNNNNGG	5 cut(s)	177, 208, 296, 308, 505
BsmFI	GGGAC	2 cut(s)	285, 532
BsnI	GGCC	5 cut(s)	200, 212, 269, 278, 374
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	633
Bsp1720I	GCTNAGC	1 cut(s)	182
BspACI	CCGC	6 cut(s)	178, 192, 222, 290, 303, 365
BspANI	GGCC	5 cut(s)	200, 212, 269, 278, 374
BspCNI	CTCAG	2 cut(s)	195, 472
BspDI	ATCGAT	1 cut(s)	636
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	4 cut(s)	201, 288, 300, 301
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	464
BsrDI	GCAATG	2 cut(s)	201, 603
BsrFI	RCCGGY	2 cut(s)	292, 374
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	2 cut(s)	292, 374
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	633
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	79, 358
Bst4CI	ACNGT	2 cut(s)	403, 523
Bst6I	CTCTTC	2 cut(s)	103, 142
BstACI	GRCGYC	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	258, 613
BstDEI	CTNAG	2 cut(s)	182, 480
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	2 cut(s)	263, 290
BstHHI	GCGC	3 cut(s)	262, 289, 307
BstKTI	GATC	1 cut(s)	636
BstMBI	GATC	1 cut(s)	633
BstMWI	GCNNNNNNNGC	8 cut(s)	129, 266, 275, 284, 362, 371, 476, 617
BstNI	CCWGG	2 cut(s)	79, 358
BstSCI	CCNGG	5 cut(s)	77, 170, 217, 269, 356
BstSFI	CTRYAG	3 cut(s)	585, 618, 683
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	6 cut(s)	75, 97, 141, 457, 525, 632
BstV2I	GAAGAC	1 cut(s)	443
BstXI	CCANNNNNNTGG	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	5 cut(s)	200, 212, 269, 278, 374
BsuTUI	ATCGAT	1 cut(s)	636
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	258, 613
CfoI	GCGC	3 cut(s)	262, 289, 307
Cfr10I	RCCGGY	2 cut(s)	292, 374
Cfr13I	GGNCC	2 cut(s)	199, 299
ClaI	ATCGAT	1 cut(s)	636
CseI	GACGC	1 cut(s)	175
CsiI	ACCWGGT	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	182, 480
DinI	GGCGCC	1 cut(s)	288
DpnI	GATC	1 cut(s)	635
DpnII	GATC	1 cut(s)	633
Eam1104I	CTCTTC	2 cut(s)	103, 142
EarI	CTCTTC	2 cut(s)	103, 142
EciI	GGCGGA	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	77, 356
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	288
EheI	GGCGCC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	334
FaiI	YATR	5 cut(s)	125, 332, 587, 608, 629
FaqI	GGGAC	2 cut(s)	285, 532
FatI	CATG	1 cut(s)	330
FauI	CCCGC	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	9 cut(s)	86, 89, 130, 179, 223, 290, 471, 539, 621
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	9 cut(s)	86, 89, 130, 179, 223, 290, 471, 539, 621
GlaI	GCGC	3 cut(s)	261, 288, 306
GluI	GCNGC	9 cut(s)	86, 89, 130, 179, 223, 290, 471, 539, 621
GsaI	CCCAGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	2 cut(s)	263, 290
HaeIII	GGCC	5 cut(s)	200, 212, 269, 278, 374
HapII	CCGG	6 cut(s)	172, 218, 270, 284, 293, 375
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	262, 289, 307
Hin1I	GRCGYC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	3 cut(s)	260, 287, 305
HinP1I	GCGC	3 cut(s)	260, 287, 305
HinfI	GANTC	3 cut(s)	71, 439, 590
HpaII	CCGG	6 cut(s)	172, 218, 270, 284, 293, 375
HphI	GGTGA	3 cut(s)	42, 105, 181
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	656
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	44, 268, 664
HpyCH4III	ACNGT	2 cut(s)	403, 523
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	3 cut(s)	551, 579, 620
HpyF10VI	GCNNNNNNNGC	8 cut(s)	129, 266, 275, 284, 362, 371, 476, 617
HpyF3I	CTNAG	2 cut(s)	182, 480
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	3 cut(s)	260, 287, 305
KasI	GGCGCC	1 cut(s)	286
KflI	GGGWCCC	1 cut(s)	299
Kzo9I	GATC	1 cut(s)	633
LmnI	GCTCC	1 cut(s)	476
Lsp1109I	GCAGC	6 cut(s)	75, 97, 141, 457, 525, 632
MabI	ACCWGGT	1 cut(s)	77
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	187, 377, 523
MalI	GATC	1 cut(s)	635
MboI	GATC	1 cut(s)	633
MboII	GAAGA	4 cut(s)	90, 129, 448, 671
MfeI	CAATTG	2 cut(s)	503, 546
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	6 cut(s)	64, 396, 503, 546, 574, 603
Mly113I	GGCGCC	1 cut(s)	287
MlyI	GAGTC	3 cut(s)	65, 433, 599
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	6 cut(s)	41, 58, 106, 168, 259, 657
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	88, 538
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	6 cut(s)	172, 218, 270, 284, 293, 375
MspR9I	CCNGG	5 cut(s)	79, 172, 219, 271, 358
MunI	CAATTG	2 cut(s)	503, 546
MvaI	CCWGG	2 cut(s)	79, 358
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	8 cut(s)	129, 266, 275, 284, 362, 371, 476, 617
NarI	GGCGCC	1 cut(s)	287
NciI	CCSGG	3 cut(s)	172, 219, 271
NdeII	GATC	1 cut(s)	633
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	4 cut(s)	201, 288, 300, 301
NmuCI	GTSAC	2 cut(s)	187, 523
PaqCI	CACCTGC	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	2 cut(s)	387, 399
PdmI	GAANNNNTTC	1 cut(s)	678
PkrI	GCNGC	9 cut(s)	87, 90, 131, 180, 224, 291, 472, 540, 622
PleI	GAGTC	3 cut(s)	65, 433, 598
PluTI	GGCGCC	1 cut(s)	290
PpsI	GAGTC	3 cut(s)	65, 433, 598
PpuMI	RGGWCCY	1 cut(s)	299
Psp5II	RGGWCCY	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	77, 356
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	2 cut(s)	77, 356
PspN4I	GGNNCC	4 cut(s)	201, 288, 300, 301
PspPI	GGNCC	2 cut(s)	199, 299
PspPPI	RGGWCCY	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	622
PvuII	CAGCTG	2 cut(s)	88, 538
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	9 cut(s)	86, 89, 130, 179, 223, 290, 471, 539, 621
Sau3AI	GATC	1 cut(s)	633
Sau96I	GGNCC	2 cut(s)	199, 299
SchI	GAGTC	3 cut(s)	65, 433, 599
ScrFI	CCNGG	5 cut(s)	79, 172, 219, 271, 358
SduI	GDGCHC	1 cut(s)	113
SexAI	ACCWGGT	1 cut(s)	77
SfcI	CTRYAG	3 cut(s)	585, 618, 683
SfiI	GGCCNNNNNGGCC	1 cut(s)	275
SfoI	GGCGCC	1 cut(s)	288
SgrAI	CRCCGGYG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	263, 464
SmoI	CTYRAG	2 cut(s)	263, 464
Sse9I	AATT	6 cut(s)	64, 396, 503, 546, 574, 603
SsiI	CCGC	6 cut(s)	178, 192, 222, 290, 303, 365
SspDI	GGCGCC	1 cut(s)	286
StyD4I	CCNGG	5 cut(s)	77, 170, 217, 269, 356
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	403, 523
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	393, 452, 636, 657
TasI	AATT	6 cut(s)	64, 396, 503, 546, 574, 603
TauI	GCSGC	3 cut(s)	181, 225, 292
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	2 cut(s)	187, 523
TseI	GCWGC	6 cut(s)	85, 88, 129, 470, 538, 620
Tsp45I	GTSAC	2 cut(s)	187, 523
TspDTI	ATGAA	1 cut(s)	418
TspRI	CASTG	1 cut(s)	622
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.