Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Forward (+)

12801805 .. 12803873

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G134200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGTCCTCCGTGTCTTCCTGTCACCATGTCCTTTCCTCTTTCTCTTCAAAGAAGAGCAGCAACCCAAACAATGTGAAAAGTCAGCTCTCTTCTTCGCTTTGGGGCTCTCCCATAAGCATAAGCAGCTTGTTCTCTTCAAACCTCAACACGTCCCTGCAATTCCAAACTCGGAGACGTCTCAGTGTCATCGCCATGGCTCCCCCAAAAGCCAAGCCCGGTGGAAAATCCAAGAAGGTGATTGGAATGATAAAGCTGGCATTGGAGGCCGGAAAGGCCACACCCGCTCCACCAGTTGGCCCTGCTCTGGGTTCTAAGGGTGTCAATATCATGGCTTTTTGTAAGGATTACAATGCCAGGACAGCGGACAAGGCTGGTTATGTCATTCCAGTTGAAATCACCGTCTATGATGATAAGAGTTTCACTTTCATATTGAAGACCCCACCTGCTTCGGTTTTGCTGCTTAAGGCCGCAGGAGTGGAGAAAGGTTCAAAAGACCCACAGCTGGAGAAGGTGGGAAAGGTCACCATTGATCAGTTGCGTACAATTGCACAAGAAAAGCTGCCAGACTTGAATTGCACAACTATAGAATCAGCAATGAGAATTATAGCAGGCACTGCAGCTAATATGGGGATCGACGTCGATCCTCCTGTTCTAGAACCGAAAAAGAAGGAAGTTCTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

229

Amino Acids

24.18

Weight (kDa)

9.73

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	454
AatII	GACGTC	2 cut(s)	181, 642
Acc36I	ACCTGC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccBSI	CCGCTC	1 cut(s)	287
AciI	CCGC	3 cut(s)	285, 365, 471
AclWI	GGATC	2 cut(s)	638, 641
AcyI	GRCGYC	3 cut(s)	5, 178, 639
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	4 cut(s)	296, 307, 308, 505
AflII	CTTAAG	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	6 cut(s)	51, 141, 395, 436, 492, 574
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	6 cut(s)	88, 129, 256, 505, 562, 623
AluI	AGCT	6 cut(s)	88, 129, 256, 505, 562, 623
Alw26I	GTCTC	2 cut(s)	169, 185
AlwI	GGATC	2 cut(s)	638, 641
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	4 cut(s)	267, 276, 298, 468
ApeKI	GCWGC	5 cut(s)	60, 126, 460, 562, 620
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	4 cut(s)	17, 250, 391, 517
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	2 cut(s)	9, 443
BbvI	GCAGC	5 cut(s)	72, 138, 447, 549, 632
BciT130I	CCWGG	1 cut(s)	358
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	169, 185
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	3 cut(s)	585, 618, 683
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	454
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	6 cut(s)	61, 127, 461, 471, 563, 621
BlsI	GCNGC	6 cut(s)	62, 128, 462, 472, 564, 622
Bme1390I	CCNGG	2 cut(s)	219, 358
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	219, 358
BpiI	GAAGAC	2 cut(s)	9, 443
BpmI	CTGGAG	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	3 cut(s)	5, 178, 639
BsaJI	CCNNGG	1 cut(s)	195
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 307, 308, 505
Bse1I	ACTGG	2 cut(s)	293, 389
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	4 cut(s)	296, 307, 308, 505
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	2 cut(s)	293, 389
BseXI	GCAGC	5 cut(s)	72, 138, 447, 549, 632
BshFI	GGCC	4 cut(s)	269, 278, 300, 470
BsiSI	CCGG	2 cut(s)	219, 270
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	4 cut(s)	296, 307, 308, 505
BsmAI	GTCTC	2 cut(s)	169, 185
BsmBI	CGTCTC	2 cut(s)	169, 185
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	4 cut(s)	269, 278, 300, 470
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	3 cut(s)	532, 633, 643
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	285, 365, 471
BspANI	GGCC	4 cut(s)	269, 278, 300, 470
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	201
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	638, 641
BspQI	GCTCTTC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	293, 389
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	532, 633, 643
BssNI	GRCGYC	3 cut(s)	5, 178, 639
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	4 cut(s)	50, 52, 97, 142
BstACI	GRCGYC	3 cut(s)	5, 178, 639
BstAFI	CTTAAG	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	258, 613
BstDEI	CTNAG	2 cut(s)	182, 315
BstDSI	CCRYGG	1 cut(s)	195
BstEII	GGTNACC	1 cut(s)	523
BstKTI	GATC	3 cut(s)	535, 636, 646
BstMAI	GTCTC	2 cut(s)	169, 185
BstMBI	GATC	3 cut(s)	532, 633, 643
BstMWI	GCNNNNNNNGC	7 cut(s)	126, 266, 275, 284, 362, 371, 617
BstNI	CCWGG	1 cut(s)	358
BstPI	GGTNACC	1 cut(s)	523
BstSCI	CCNGG	2 cut(s)	217, 356
BstSFI	CTRYAG	3 cut(s)	585, 618, 683
BstV1I	GCAGC	5 cut(s)	72, 138, 447, 549, 632
BstV2I	GAAGAC	2 cut(s)	9, 443
BsuRI	GGCC	4 cut(s)	269, 278, 300, 470
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	175
BtrI	CACGTC	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	190, 615
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	2 cut(s)	258, 613
CaiI	CAGNNNCTG	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	543
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	3 cut(s)	29, 196, 331
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	182, 315
DpnI	GATC	3 cut(s)	534, 635, 645
DpnII	GATC	3 cut(s)	532, 633, 643
Eam1104I	CTCTTC	4 cut(s)	50, 52, 97, 142
EarI	CTCTTC	4 cut(s)	50, 52, 97, 142
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	2 cut(s)	169, 185
FaeI	CATG	3 cut(s)	32, 199, 334
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	28, 195, 330
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	6 cut(s)	61, 127, 461, 471, 563, 621
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	6 cut(s)	61, 127, 461, 471, 563, 621
FspBI	CTAG	1 cut(s)	656
GluI	GCNGC	6 cut(s)	61, 127, 461, 471, 563, 621
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	4 cut(s)	269, 278, 300, 470
HapII	CCGG	2 cut(s)	219, 270
Hin1I	GRCGYC	3 cut(s)	5, 178, 639
Hin1II	CATG	3 cut(s)	32, 199, 334
HinfI	GANTC	1 cut(s)	590
HpaII	CCGG	2 cut(s)	219, 270
HphI	GGTGA	4 cut(s)	17, 250, 391, 517
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	656
Hpy99I	CGWCG	2 cut(s)	641, 644
HpyAV	CCTTC	3 cut(s)	229, 505, 664
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	3 cut(s)	152, 178, 639
HpyCH4V	TGCA	4 cut(s)	160, 551, 579, 620
HpyF10VI	GCNNNNNNNGC	7 cut(s)	126, 266, 275, 284, 362, 371, 617
HpyF3I	CTNAG	2 cut(s)	182, 315
HpySE526I	ACGT	3 cut(s)	152, 178, 639
Hsp92I	GRCGYC	3 cut(s)	5, 178, 639
Hsp92II	CATG	3 cut(s)	32, 199, 334
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	532, 633, 643
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	205, 292
Lsp1109I	GCAGC	5 cut(s)	72, 138, 447, 549, 632
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	3 cut(s)	152, 178, 639
MaeIII	GTNAC	2 cut(s)	23, 523
MalI	GATC	3 cut(s)	534, 635, 645
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	3 cut(s)	532, 633, 643
MboII	GAAGA	7 cut(s)	9, 39, 67, 84, 87, 129, 448
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	4 cut(s)	161, 546, 574, 603
MnlI	CCTC	5 cut(s)	19, 49, 155, 259, 657
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	365, 505
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	2 cut(s)	219, 270
MspR9I	CCNGG	2 cut(s)	219, 358
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	7 cut(s)	126, 266, 275, 284, 362, 371, 617
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	532, 633, 643
NlaIII	CATG	3 cut(s)	32, 199, 334
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	2 cut(s)	23, 523
PaqCI	CACCTGC	1 cut(s)	454
PciSI	GCTCTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	590
PflMI	CCANNNNNTGG	1 cut(s)	296
PkrI	GCNGC	6 cut(s)	62, 128, 462, 472, 564, 622
Psp6I	CCWGG	1 cut(s)	356
PspEI	GGTNACC	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	617
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	6 cut(s)	61, 127, 461, 471, 563, 621
Sau3AI	GATC	3 cut(s)	532, 633, 643
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	219, 358
SduI	GDGCHC	1 cut(s)	110
SfcI	CTRYAG	3 cut(s)	585, 618, 683
SfiI	GGCCNNNNNGGCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	4 cut(s)	161, 546, 574, 603
SsiI	CCGC	3 cut(s)	285, 365, 471
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	2 cut(s)	217, 356
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	3 cut(s)	155, 181, 642
TaqI	TCGA	2 cut(s)	636, 642
TasI	AATT	4 cut(s)	161, 546, 574, 603
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	1 cut(s)	590
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	190, 622
TseFI	GTSAC	2 cut(s)	23, 523
TseI	GCWGC	5 cut(s)	60, 126, 460, 562, 620
Tsp45I	GTSAC	2 cut(s)	23, 523
TspDTI	ATGAA	1 cut(s)	418
TspRI	CASTG	2 cut(s)	190, 622
Van91I	CCANNNNNTGG	1 cut(s)	296
Vha464I	CTTAAG	1 cut(s)	464
XbaI	TCTAGA	1 cut(s)	655
XspI	CTAG	1 cut(s)	656
ZraI	GACGTC	2 cut(s)	179, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.