Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015081

Physical Location & Seq

Genomic Coordinates Forward (+)

20965577 .. 20966805

Gene Structure 1229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCGTCTTCTTCTCTATCACACCTTTGCAGCTGCACCTCTTCTCTGCATCATCCTCTCTCACATTCTATTTCGGCTAACTTAACCTCCAAAACAAATCTTTCCTTTCAGTTTCTTGCAAACAGACAGTCCCCACTTCTCTCCTCAACCCCGAGATCTCTCACCGTTATCGCCGGCGCCACGGCTCCGTCGAAACTTAGAGGCAAAACCAAAAAAGTGGTTGGAATTGTAAAAATGAATGTATGGGCCGGAAAAGCAACTTTGGCGCCGCCGGACCAGAGCTTCACTTTTATCCTCAAGACCCCTCCTACTTCGTTTTTGTTGCTTAAGGCTGCAGGTGTTAAGAAGGGATCAAAAGATCCAAAGCAAATTAAAGTTGGGATGATAACAATAGACCAAGTGCGCAAAATTGCAGAAGTAAAGCTGCCTGAGCTGAATTGCACAACAATTGTATCCACTATGAGAACCATTGCAGGAACTGCGGGTAACATGGGGATAGACATTGACCCTCCTATTCTTGAACCTAAAAACAAAGTAGCTTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

182

Amino Acids

19.33

Weight (kDa)

10.21

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L11	PF00298	100 - 168	3.1e-25	Ribosomal protein L11, RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32990 AT5G51610
fragaria_vesca	FvH4_5g10460
malus_domestica	MD06G1123700.v1.1 MD14G1139900.v1.1
prunus_persica	Prupe.5G134200_v2.0.a1
pyrus_communis	pycom06g11430 pycom14g11560
rosa_chinensis	RchiOBHm_Chr7g0187751
rosa_laevigata	RLG00000004759
rosa_multiflora	Rmu_sc0004483.1_g000028 Rmu_sc0032029.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267110
rosa_rugosa	Rorug06G0483900
rosa_samantha	Rh7BG090800
rosa_wichuraiana	Rw7G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc16I	TGCGCA	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	176, 265
AciI	CCGC	2 cut(s)	269, 482
AclWI	GGATC	2 cut(s)	353, 358
AcyI	GRCGYC	3 cut(s)	5, 177, 266
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	521
AluBI	AGCT	5 cut(s)	33, 282, 424, 433, 539
AluI	AGCT	5 cut(s)	33, 282, 424, 433, 539
AlwI	GGATC	2 cut(s)	353, 358
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	4 cut(s)	30, 33, 332, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspLEI	GCGC	3 cut(s)	179, 268, 405
AspS9I	GGNCC	2 cut(s)	246, 274
AsuHPI	GGTGA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	274
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BanI	GGYRCC	2 cut(s)	176, 265
BbvI	GCAGC	4 cut(s)	20, 42, 319, 411
BceAI	ACGGC	1 cut(s)	198
BciVI	GTATCC	1 cut(s)	463
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	2 cut(s)	180, 269
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	326
BfuI	GTATCC	1 cut(s)	463
BglII	AGATCT	1 cut(s)	155
BisI	GCNGC	5 cut(s)	31, 34, 269, 333, 425
BlsI	GCNGC	5 cut(s)	32, 35, 270, 334, 426
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	2 cut(s)	246, 274
BmiI	GGNNCC	3 cut(s)	178, 186, 267
BmsI	GCATC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	281
BsaHI	GRCGYC	3 cut(s)	5, 177, 266
BsaJI	CCNNGG	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	2 cut(s)	52, 387
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	20, 42, 319, 411
BsgI	GTGCAG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	2 cut(s)	176, 265
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	174, 249, 272
BslFI	GGGAC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	155, 350, 358
BspACI	CCGC	2 cut(s)	269, 482
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	3 cut(s)	178, 186, 267
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	353, 358
BspT107I	GGYRCC	2 cut(s)	176, 265
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	155, 350, 358
BssNI	GRCGYC	3 cut(s)	5, 177, 266
Bst4CI	ACNGT	2 cut(s)	129, 166
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	3 cut(s)	5, 177, 266
BstAFI	CTTAAG	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	197, 429
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	52, 387
BstH2I	RGCGCY	2 cut(s)	180, 269
BstHHI	GCGC	3 cut(s)	179, 268, 405
BstKTI	GATC	3 cut(s)	158, 353, 361
BstMBI	GATC	3 cut(s)	155, 350, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 263, 430, 479
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	20, 42, 319, 411
BstX2I	RGATCY	2 cut(s)	155, 358
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	2 cut(s)	155, 358
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	52, 387
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	175
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	3 cut(s)	179, 268, 405
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	246, 274
CviAII	CATG	1 cut(s)	490
CviJI	RGCY	9 cut(s)	33, 77, 185, 248, 282, 332, 424, 433, 539
CviKI_1	RGCY	9 cut(s)	33, 77, 185, 248, 282, 332, 424, 433, 539
DdeI	CTNAG	2 cut(s)	197, 429
DinI	GGCGCC	2 cut(s)	178, 267
DpnI	GATC	3 cut(s)	157, 352, 360
DpnII	GATC	3 cut(s)	155, 350, 358
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	151
EgeI	GGCGCC	2 cut(s)	178, 267
EheI	GGCGCC	2 cut(s)	178, 267
FaeI	CATG	1 cut(s)	493
FaiI	YATR	3 cut(s)	244, 461, 491
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	489
FauI	CCCGC	1 cut(s)	475
Fnu4HI	GCNGC	5 cut(s)	31, 34, 269, 333, 425
FokI	GGATG	2 cut(s)	39, 394
Fsp4HI	GCNGC	5 cut(s)	31, 34, 269, 333, 425
FspI	TGCGCA	1 cut(s)	404
GlaI	GCGC	3 cut(s)	178, 267, 404
GluI	GCNGC	5 cut(s)	31, 34, 269, 333, 425
HaeII	RGCGCY	2 cut(s)	180, 269
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	3 cut(s)	174, 249, 272
HhaI	GCGC	3 cut(s)	179, 268, 405
Hin1I	GRCGYC	3 cut(s)	5, 177, 266
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	3 cut(s)	177, 266, 403
HinP1I	GCGC	3 cut(s)	177, 266, 403
HpaII	CCGG	3 cut(s)	174, 249, 272
HphI	GGTGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	298, 518
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	129, 166
HpyCH4V	TGCA	8 cut(s)	30, 36, 49, 119, 335, 413, 441, 473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 263, 430, 479
HpyF3I	CTNAG	2 cut(s)	197, 429
Hsp92I	GRCGYC	3 cut(s)	5, 177, 266
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	3 cut(s)	177, 266, 403
KasI	GGCGCC	2 cut(s)	176, 265
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	155, 350, 358
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	7 cut(s)	187, 262, 285, 290, 321, 441, 459
Lsp1109I	GCAGC	4 cut(s)	20, 42, 319, 411
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	3 cut(s)	157, 352, 360
MboI	GATC	3 cut(s)	155, 350, 358
MboII	GAAGA	2 cut(s)	3, 33
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	2 cut(s)	155, 358
MluCI	AATT	5 cut(s)	225, 369, 408, 436, 447
Mly113I	GGCGCC	2 cut(s)	177, 266
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	8 cut(s)	49, 66, 97, 154, 194, 305, 315, 519
MreI	CGCCGGCG	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	173
MseI	TTAA	4 cut(s)	83, 327, 342, 372
MspA1I	CMGCKG	1 cut(s)	33
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	3 cut(s)	174, 249, 272
MunI	CAATTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	4 cut(s)	254, 263, 430, 479
NaeI	GCCGGC	1 cut(s)	175
NarI	GGCGCC	2 cut(s)	177, 266
NdeII	GATC	3 cut(s)	155, 350, 358
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	3 cut(s)	178, 186, 267
NsbI	TGCGCA	1 cut(s)	404
PaqCI	CACCTGC	1 cut(s)	326
PcsI	WCGNNNNNNNCGW	1 cut(s)	188
PdiI	GCCGGC	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	32, 35, 270, 334, 426
PluTI	GGCGCC	2 cut(s)	180, 269
PspN4I	GGNNCC	3 cut(s)	178, 186, 267
PspPI	GGNCC	2 cut(s)	246, 274
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	155, 358
PvuII	CAGCTG	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	83, 327, 342, 372
SatI	GCNGC	5 cut(s)	31, 34, 269, 333, 425
Sau3AI	GATC	3 cut(s)	155, 350, 358
Sau96I	GGNCC	2 cut(s)	246, 274
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	333
SfoI	GGCGCC	2 cut(s)	178, 267
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	296, 326
SmoI	CTYRAG	2 cut(s)	296, 326
Sse9I	AATT	5 cut(s)	225, 369, 408, 436, 447
SsiI	CCGC	2 cut(s)	269, 482
SspDI	GGCGCC	2 cut(s)	176, 265
TaaI	ACNGT	2 cut(s)	129, 166
TaqI	TCGA	1 cut(s)	191
TasI	AATT	5 cut(s)	225, 369, 408, 436, 447
TauI	GCSGC	1 cut(s)	271
Tru1I	TTAA	4 cut(s)	83, 327, 342, 372
Tru9I	TTAA	4 cut(s)	83, 327, 342, 372
TseI	GCWGC	4 cut(s)	30, 33, 332, 424
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	177
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.